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Mechanism underlying the clustering-dispersion dynamics of the channel protein on the membrane

Research Project

Project/Area Number 26253014
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field General physiology
Research InstitutionUniversity of Fukui

Principal Investigator

Oiki Shigetoshi  福井大学, 学術研究院医学系部門, 教授 (10185176)

Co-Investigator(Kenkyū-buntansha) 炭竈 享司  福井大学, 医学部, 特命助教 (30579412)
岩本 真幸  福井大学, 医学部, 助教 (40452122)
角野 歩  福井大学, 医学部, 特別研究員 (80717140)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥41,470,000 (Direct Cost: ¥31,900,000、Indirect Cost: ¥9,570,000)
Fiscal Year 2016: ¥8,450,000 (Direct Cost: ¥6,500,000、Indirect Cost: ¥1,950,000)
Fiscal Year 2015: ¥8,320,000 (Direct Cost: ¥6,400,000、Indirect Cost: ¥1,920,000)
Fiscal Year 2014: ¥24,700,000 (Direct Cost: ¥19,000,000、Indirect Cost: ¥5,700,000)
Keywordslipid bilayer / single-channel current / membrane lipid / clustering / channel gating / チャネル / 細胞膜 / 集合・離散 / ゲーティング / 蛋白質 / 走査プローブ顕微鏡 / 生理学 / イオンチャネル / 膜蛋白質 / 原子間力顕微鏡
Outline of Final Research Achievements

We found that the KcsA potassium channel move randomly on the membrane surface, and undergo clustering and dispersion in relation to the activation gating using the atomic force microscopy. To elucidate the underlying mechanism, we developed the method such that the channel was reconstituted into the membrane with the same orientation. Nearly 100% of the channels were oriented with their extracellular side up in the membrane. This orientation was confirmed by a scorpion toxin, agitoxin 2, using AFM. The clustering-dispersion status on the membrane was examined using the AFM in different lipid compositions, and the distribution was highly related to the phase separation of the membrane. On the other hand, the channel activities were measured using a newly developed contact bubble bilayer method, which allows varying the lipid composition of the membrane in each leaflet. We have screened various types of hydrophobic substances via the positive effects to the KcsA channel.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (19 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (11 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 11 results,  Open Access: 8 results,  Acknowledgement Compliant: 5 results) Presentation (3 results) (of which Invited: 3 results) Book (2 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] Institute of Biomedical Sciences/Academia Sinica/Taipei(Taiwan)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Rectified Proton Grotthuss Conduction Across a Long Water-Wire in the Test Nanotube of the Polytheonamide B Channel.2016

    • Author(s)
      Matsuki, Y., Iwamoto, M. Mita, K., Shigemi, K., Matsunaga, S., and Oiki
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 138 Issue: 12 Pages: 4168-4177

    • DOI

      10.1021/jacs.5b13377

    • NAID

      120006226473

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Channel Function Reconstitution and Re-animation: A Single-channel Strategy in the Post-crystal Age.2015

    • Author(s)
      Oiki, S.
    • Journal Title

      J. Physiol.

      Volume: 593 Issue: 12 Pages: 2553-2573

    • DOI

      10.1113/jp270025

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] pH-dependent promotion of phospholipid flip-flop by the KcsA potassium channel2015

    • Author(s)
      H. Nakao, K. Ikeda, M. Iwamoto, H. Shimizu, S. Oiki, Y. Ishihama, M. Nakano
    • Journal Title

      Biochim. Biophys. Acta-Biomembr.

      Volume: 1848 Issue: 1 Pages: 145-150

    • DOI

      10.1016/j.bbamem.2014.10.001

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Contact bubble bilayers with flush drainage2015

    • Author(s)
      Iwamoto M., Oiki S.
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 9110-9110

    • DOI

      10.1038/srep09110

    • NAID

      120005572953

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Specific interactions between alkali metal cations and the KcsA channel studied using ATR-FTIR spectroscopy2015

    • Author(s)
      Y. Furutani, H. Shimizu, Y. Asai, S. Oiki, H. Kndori
    • Journal Title

      Biophysics and Physicobiology

      Volume: 12 Issue: 0 Pages: 37-45

    • DOI

      10.2142/biophysico.12.0_37

    • NAID

      130005098800

    • ISSN
      2189-4779
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mechanism for attenuated outward conductance induced by mutations in the cytoplasmic pore of Kir2.1 channels.2015

    • Author(s)
      Chang, H.-K., Iwamoto, M., Oiki, S. and Shieh, R.-C.
    • Journal Title

      Sci. Rep.

      Volume: 5 Issue: 1 Pages: 18404-18404

    • DOI

      10.1038/srep18404

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Surface-enhanced IR absorption spectroscopy of the KcsA potassium channel upon application of an2015

    • Author(s)
      A. Yamakata, H. Shimizu, S. Oiki
    • Journal Title

      Phys Chem Chem Phys.

      Volume: 17 Issue: 33 Pages: 21104-21111

    • DOI

      10.1039/c5cp02681d

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure and Dynamics of Membrane-embedded KcsA Potassium Channel Revealed by Atomic Force Microscopy2015

    • Author(s)
      角野歩、山本大輔、炭竃享司、岩本真幸、出羽毅久、老木成稔
    • Journal Title

      Seibutsu Butsuri

      Volume: 55 Issue: 1 Pages: 005-010

    • DOI

      10.2142/biophys.55.005

    • NAID

      130004794734

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Distinct Configurations of Cations and Water in the Selective Filter of the KcsA Potasium Channel Probed by the 3D-RISM Theory2014

    • Author(s)
      Saree Phongphanphanee, Norio Yoshida, Shigetoshi Oiki, and Fumio Hirata
    • Journal Title

      J.Mol. Liq.

      Volume: 167 Pages: 578-584

    • DOI

      10.1016/j.molliq.2014.03.050

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gating-associated clustering-dispersion dynamics of the KcsA potassium channel in a lipid membrane2014

    • Author(s)
      A. Sumino, D. Yamamoto, M. Iwamoto, T. Dewa, S. Oiki
    • Journal Title

      J. Phys. Chem. Lett.

      Volume: 5 Issue: 3 Pages: 578-584

    • DOI

      10.1021/jz402491t

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Paradoxical one-ion pore behavior of the long β-helical peptide of marine cytotoxic polytheonamide B2014

    • Author(s)
      M. Iwamoto, S. Matsunaga, S. Oiki
    • Journal Title

      Sci. Rep.

      Volume: 4 Issue: 1 Pages: 3636-3636

    • DOI

      10.1038/srep03636

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Channel Function Reconstitution and Reanimation2014

    • Author(s)
      Oiki, S.
    • Organizer
      The 45th NIPS International symposium, Co-sponsored by “The Journal of Physiology”
    • Place of Presentation
      岡崎コンファレンスセンター(愛知)
    • Year and Date
      2014-11-26 – 2014-11-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] チャネル膜蛋白質KcsAの一分子構造-機能ダイナミクスと膜2014

    • Author(s)
      老木成稔
    • Organizer
      膜学会
    • Place of Presentation
      早稲田大学(東京)
    • Year and Date
      2014-05-13 – 2014-05-14
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Spatio-Temporal Interplay of the Single KcsA Potassium Channel in the Membrane2014

    • Author(s)
      Oiki, S.
    • Organizer
      Single Protein Dynamics in Cellulo: Spatio-Temporal, Structural and Quantitative Analyses
    • Place of Presentation
      沖縄科学技術大学院大学(沖縄)
    • Year and Date
      2014-04-21 – 2014-04-25
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] Dynamics of the Potassium Channel Pore.2017

    • Author(s)
      Oiki,S.
    • Publisher
      Reference Module in Life Sciences.
    • Related Report
      2016 Annual Research Report
  • [Book] 1分子ナノバイオ計測〜分子から生命システムを探る革新的技術2014

    • Author(s)
      老木成稔
    • Total Pages
      222
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report
  • [Remarks] 分子生理学(生理学1)研究室

    • URL

      http://seiri1.med.lab.u-fukui.ac.jp/

    • Related Report
      2014 Annual Research Report
  • [Patent(Industrial Property Rights)] 脂質二重膜形成器2017

    • Inventor(s)
      老木成稔、岩本真幸
    • Industrial Property Rights Holder
      老木成稔、岩本真幸
    • Industrial Property Rights Type
      意匠
    • Filing Date
      2017-03-28
    • Related Report
      2016 Annual Research Report

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Published: 2014-04-04   Modified: 2022-03-01  

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