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Elucidation of functional connectivity between neurons and astrocytes that generate self-excited synchronization phenomenon in the respiratory center

Research Project

Project/Area Number 26280109
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Life / Health / Medical informatics
Research InstitutionThe Institute of Statistical Mathematics

Principal Investigator

Fumikazu Miwakeichi  統計数理研究所, モデリング研究系, 准教授 (30360647)

Co-Investigator(Kenkyū-buntansha) 尾家 慶彦  兵庫医科大学, 医学部, 助教 (50396470)
Co-Investigator(Renkei-kenkyūsha) OKU Yoshitaka  兵庫医科大学, 医学部, 教授 (20252512)
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥14,560,000 (Direct Cost: ¥11,200,000、Indirect Cost: ¥3,360,000)
Fiscal Year 2016: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2015: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Keywords生体イメージングデータ時空間解析 / 神経情報学 / ニューロインフォマティクス / 自励的同期活動 / 呼吸中枢 / 抑制性ニューロン / カルシウムイメージング / 時空間解析
Outline of Final Research Achievements

In this study, we have developed a preprocessing system for semiautomatic detection of active neurons and astrocytes position and automatic identification method of neural types based on a motion artifact correction technique of calcium imaging data that recorded the activity of neurons and astrocytes, a spatiotemporal smoothing method and an image binarization method. Then, we detected inspiratory cells among the active neurons and astrocytes using time-delayed cross correlation analysis and estimated the causality between cells using autoregressive model with exogenous input and a multivariate autoregressive model based approaches. Though it is necessary to evaluated the goodness of fit when applying these models, the estimated causality was found to be valid when comparing it with the data before and after artificially modifying the network structure among cells,.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (32 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (3 results) Journal Article (8 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 7 results,  Open Access: 5 results,  Acknowledgement Compliant: 3 results) Presentation (21 results) (of which Int'l Joint Research: 11 results,  Invited: 2 results)

  • [Int'l Joint Research] University of Gottingen/Carl-Ludwig-Institute for Physiology(Germany)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] University Medical Center Gottingen(ドイツ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University of Gottingen(Germany)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Night duty and decreased brain activity of medical residents: a wearable optical topography study2017

    • Author(s)
      Nishida M, Kikuchi S, Miwakeichi F, Suda S
    • Journal Title

      Med Educ Online

      Volume: 22 Issue: 1 Pages: 1379345-1379345

    • DOI

      10.1080/10872981.2017.1379345

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 2-3-10. Development of cerebral activity examination that is simple and robust against repetition by using wearable NIRS2017

    • Author(s)
      Kikuchi Senichiro、Kurosawa Yukie、Murooka Nami、Shimoda Kaori、Nishida Masaki、Miwakeichi Fumikazu、Tozato Fusae
    • Journal Title

      Clinical Neurophysiology

      Volume: 128 Issue: 6 Pages: e166-e167

    • DOI

      10.1016/j.clinph.2017.03.018

    • Related Report
      2017 Annual Research Report
    • Open Access
  • [Journal Article] Emergent Network Topology within the Respiratory Rhythm-Generating Kernel Evolved In Silico2016

    • Author(s)
      Amit Lal, Yoshitaka Oku, Hiroshi Someya, Fumikazu Miwakeichi, Yoshiyasu Tamura
    • Journal Title

      PLoS One

      Volume: 6;11(5) Issue: 5 Pages: e0154049-e0154049

    • DOI

      10.1371/journal.pone.0154049

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Respiratory calcium fluctuations in low-frequency oscillating astrocytes in the pre-Botzinger2015

    • Author(s)
      Y. Oku, J. Fresemann, F. Miwakeichi, S. Holsmann
    • Journal Title

      Respiratory Physiology & Neurobiology

      Volume: 00 Pages: 00-00

    • DOI

      10.1016/j.resp.2015.02.002

    • Related Report
      2016 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Stochastic activation among inspiratory cells in the pre-Botzinger complex of the rat medulla revealed by Ca2+ imaging2015

    • Author(s)
      Oke, Yoshihiko、Boiroux, Dimitri、Miwakeichi, Fumikazu、Oku, Yoshitaka
    • Journal Title

      Neuroscinece Letters

      Volume: 595 Pages: 12-17

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A statistical strategy of optical imaging data analysis to differentiate neurons and astrocytes in the brain stem2015

    • Author(s)
      2.Miwakeichi, Fumikazu、Oke, Yoshihiko、Oku, Yoshitaka、Galka, Andreas、Hülsman, Swen
    • Journal Title

      the IEEE Engineering in Medicine and Biology Society

      Volume: 該当なし

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Pixel timing correction in time-lapsed calcium imaging using point scanning microscopy2014

    • Author(s)
      Boiroux D, Oke Y, Miwakeichi F, Oku Y
    • Journal Title

      Journal Neuroscience Methods

      Volume: 30, 237 Pages: 60-68

    • DOI

      10.1016/j.jneumeth.2014.08.008

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Network Connectivity of the Respiratory Rhythm-generating Kernel2014

    • Author(s)
      A Lal, Y. Oke, D. Boiroux and Y. Oku
    • Journal Title

      24th Annual Conference of Japanese Neural Network Society

      Volume: 00 Pages: 34-35

    • DOI

      10.1109/smc.2014.6974505

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Detection of irregularly firing inspiratory neurons in the pre-Botzinger complex based on spatiotemporal optical imaging data analysis2017

    • Author(s)
      F. Miwakeich, Y. Oke, Y. Oku, S. Besser, J. Hirrlinger, S. Hulsmann
    • Organizer
      The 47th Annual Meeting of Society for Neuroscience
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of cerebral activity examination that is simple and robust against repetition by using wearable NIRS2017

    • Author(s)
      S. Kikuchi, N. Tsutui, Y. Kurosawa, N. Murooka, K. Shimoda, M. Nishida, F. Miwakeichi, F. T ozato
    • Organizer
      WPA XVII World Congress of Psychiatry
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] General pattern of activation sequence among excitatory/inhibitory inspiratory neurons during rhythmic burst in the pre-Botzinger complex of the mice medulla slice2017

    • Author(s)
      Y. Oke, F. Miwakeich, Y. Oku, S. Besser, J. Hirrlinger, S. Hulsmann
    • Organizer
      Oxford Conference 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Estimation of spontaneous synchronous neuronal network based on spatio-temporal optical imaging data analysis2017

    • Author(s)
      F. Miwakeichi, Y.Oke, S. Hulsman
    • Organizer
      ISI-ISM-ISSAS Joint Conference TOKYO 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Neuronal type-dependent stochastic activation sequence among inspiratory neurons during rhythmic burst in the pre-Botzinger complex of the mice medulla slice2017

    • Author(s)
      Y. Oke, F. Miwakeichi, Y. Oku, S. Besser, J. Hirrlinger and S. Huelsmann
    • Organizer
      The 47th Annual Meeting of Society for Neuroscience
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] マウス延髄スライスの吸息性中枢内で吸息性細胞が自励的同期活動を行う際の細胞種依存的な活性化順序パターン2017

    • Author(s)
      尾家慶彦, 三分一史和, 越久仁敬, S. Besser, J. Hirrlinger, S. Huelsmann
    • Organizer
      第110回近畿生理学談話会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Detection of irregularly firing inspiratory neurons in the pre-Botzinger complex based on spatio-temporal optical imaging data analysis2017

    • Author(s)
      三分一史和, 尾家慶彦, 越久仁敬, S. Besser, J. Hirrlinger, S. Huelsmann
    • Organizer
      平成29年度統計数理研究所共同研究集会 生体信号・イメージングデータ解析に基づくダイナミカルバイオインフォマティクスの展開
    • Related Report
      2017 Annual Research Report
  • [Presentation] Rhythmic activation patterns of excitatory/inhibitory inspiratory neurons in the pre-Botzinger complex of the mice medulla slice2017

    • Author(s)
      Yoshihiko Oke, Fumikazu Miwakeich, Yoshitaka Oku, Stefanie Besser, Johannes Hirrlinger, Swen Huelsmann
    • Organizer
      第94回日本生理学会大会
    • Place of Presentation
      静岡県浜松市アクトシティ浜松
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of inhibitory inspiratory neurons in the pre-Botzinger complex of neonatal mice2016

    • Author(s)
      Oke, Yoshihiko、Miwakeichi, Fumikazu、Oku, Yoshitaka、Besser, Stefanie、Hirrlinger, Johannes、 Hülsmann, Swen
    • Organizer
      The 93rd Annual Meeting of The Physiological Society of Japan
    • Place of Presentation
      Sapporo、Japan
    • Year and Date
      2016-03-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A statisticalmapping strategy to identify inspiratory neurons among active cells in the pre-Botzinger Complex2016

    • Author(s)
      三分一史和
    • Organizer
      データ科学シンポジウム 欠測データ解析とモデル選択: 生体情報データの統計モデル
    • Place of Presentation
      大阪、日本
    • Year and Date
      2016-01-22
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 生体イメージングデータの事前処理とイベント関連活動の検出2016

    • Author(s)
      三分一史和, 尾家慶彦
    • Organizer
      統計数理研究所共同研究集会「動的生体情報論の現状と展望2」
    • Place of Presentation
      東京都立川市統計数理研究所
    • Related Report
      2016 Annual Research Report
  • [Presentation] 脳幹におけるニューロン,アストロサイトの識別のための統計的画像解析2015

    • Author(s)
      三分一 史和
    • Organizer
      統計数理研究所共同研究集会 動的生体情報論の現状と展望
    • Place of Presentation
      東京、日本
    • Year and Date
      2015-09-10
    • Related Report
      2015 Annual Research Report
  • [Presentation] A Statistical Mapping Strategy to Identify Inspiratory Neurons among Active Cells in the Pre-Bozinger Complex2015

    • Author(s)
      Miwakeichi, Fumikazu、Oke, Yoshihiko、Oku, Yoshitaka、Galka, Andreas、Hülsmann, Swen
    • Organizer
      37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society
    • Place of Presentation
      Milan、Italy
    • Year and Date
      2015-08-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Differentiation of neurons and astrocytes in brain stem by statistical image processing methods2015

    • Author(s)
      Miwakeichi, Fumikazu、Oke, Yoshihiko、Oku, Yoshitaka、Galka, Andreas、Hülsmann, Swen
    • Organizer
      The 38th Annual Meeting of the Japan Neuroscience Society
    • Place of Presentation
      Kobe、Japan
    • Year and Date
      2015-07-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Stochastic activation of inspiratory cells in the pre-Bötzinger complex with loose regularity during spontaneous inspiratory rhythmic bursts2015

    • Author(s)
      Oke, Yoshihiko、Boiroux, Dimitri、Miwakeichi, Fumikazu、Oku, Yoshitaka、Stochastic activation of inspiratory cells in the pre-Bötzinger complex
    • Organizer
      The 38th Annual Meeting of the Japan Neuroscience Society
    • Place of Presentation
      Kobe、Japan
    • Year and Date
      2015-07-28
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A statistical strategy of optical imaging data analysis to differentiate neurons and astrocytes in the brain stem2015

    • Author(s)
      Miwakeichi, Fumikazu、Oke, Yoshihiko、Oku, Yoshitaka、Galka, Andreas、Hülsmann, Swen
    • Organizer
      Statistical Computing Asia
    • Place of Presentation
      Taipei、Taiwan
    • Year and Date
      2015-07-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Loose regulation of calcium bursting sequence among inspiratory cells in the pre-Botzinger complex during rhythmic burst2015

    • Author(s)
      Y. Oke, D. Boiroux, F. Miwakeichi and Y. Oku
    • Organizer
      第92回日本生理学会大会・第120回日本解剖学会総会・全国学術集会合同大会
    • Place of Presentation
      兵庫
    • Year and Date
      2015-03-21 – 2015-03-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] Flexible bursting sequence among inspiratory cells in the pre-Botzinger complex revealed by wide-field Ca2+ imaging2014

    • Author(s)
      Y. Oke, D. Bouiroux, F. Miwakeichi and Y. Oku
    • Organizer
      The 13th Oxford Breathing Meeting Respiratory and Cardiovascular 2014
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2014-10-26 – 2014-10-31
    • Related Report
      2014 Annual Research Report
  • [Presentation] Connectivity of the respiratory network by using Granger causality2014

    • Author(s)
      D. Bouiroux, Y. Oke, F. Miwakeichi and Y. Oku
    • Organizer
      The 13th Oxford Breathing Meeting Respiratory and Cardiovascular 2014
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2014-10-26 – 2014-10-31
    • Related Report
      2014 Annual Research Report
  • [Presentation] 統計値マップによるニューロン、アストロサイトの識別2014

    • Author(s)
      三分一 史和, 尾家 慶彦
    • Organizer
      統計数理研究所 共同研究集会「ダイナミカルバイオインフォマテイックスの展開III」
    • Place of Presentation
      東京
    • Year and Date
      2014-09-18 – 2014-09-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] 光学的イメージング法とニューロン、アストロサイトの識別2014

    • Author(s)
      三分一 史和, 尾家 慶彦
    • Organizer
      電子情報通信学会医用画像研究会”医用画像解析における統計数理的手法”
    • Place of Presentation
      東京
    • Year and Date
      2014-09-02
    • Related Report
      2014 Annual Research Report
    • Invited

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Published: 2014-04-04   Modified: 2024-01-24  

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