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Development of drug discovery chemistry centered on cyclodepsipeptide natural products

Research Project

Project/Area Number 26282208
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Biomolecular chemistry
Research InstitutionTohoku University

Principal Investigator

Doi Takayuki  東北大学, 薬学研究科, 教授 (90212076)

Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,900,000 (Direct Cost: ¥13,000,000、Indirect Cost: ¥3,900,000)
Fiscal Year 2016: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2015: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥8,060,000 (Direct Cost: ¥6,200,000、Indirect Cost: ¥1,860,000)
Keywords環状デプシペプチド / 天然物 / 全合成 / コンビナトリアル合成 / 三次元構造解析 / 構造活性相関 / ミメティクス / 創薬 / 有機合成 / 三次元構造 / 立体配座解析 / 細胞毒性
Outline of Final Research Achievements

We have achieved efficient synthetic methods for the synthesis of various analogues of naturally occurring cyclodepsipeptides, apratoxin A and destruxin E, through a solid-phase peptide synthesis and macrocyclization in solution. Based on the three-dimensional analysis of apratoxin A using a distance geometry method, we designed sixteen mimetics without having a modified thiazoline moiety that would cause non-specific interaction. We discovered apratoxin M16 that exhibited similarly high level of growth inhibitory activity against 8 of 10 cancer cell lines as apratoxin A. We also achieved the combinatorial synthesis of 18 and 64 analogues of destruxin E and destruxin B. It was revealed that two intramolecular hydrogen bondings in destruxin regulate the three-dimensional conformation that is crucial to the induction of morphological changes in osteoclast-like multinuclear cells. In addition, we prepared an azido-containing molecular probe to identify a target molecule of destruxins.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (24 results)

All 2017 2016 2015 2014 Other

All Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 7 results,  Open Access: 5 results,  Acknowledgement Compliant: 4 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results) Remarks (7 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Conformation-Based Design and Synthesis of Apratoxin A Mimetics Modified at the α,β-Unsaturated Thiazoline Moiety2017

    • Author(s)
      Onda Yuichi、Masuda Yuichi、Yoshida Masahito、Doi Takayuki
    • Journal Title

      J. Med. Chem.

      Volume: 60 Issue: 15 Pages: 6751-6765

    • DOI

      10.1021/acs.jmedchem.7b00833

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Combinatorial Solid-Phase Synthesis and Biological Evaluation of Cyclodepsipeptide Destruxin B as a Negative Regulator for Osteoclast Morphology2016

    • Author(s)
      H. Sato, M. Yoshida, H. Murase, H. Nakagawa, T. Doi
    • Journal Title

      ACS Combinatorial Science

      Volume: 18 Issue: 9 Pages: 590-595

    • DOI

      10.1021/acscombsci.6b00076

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Design, Synthesis, and Biological Evaluation of Beauveriolide Analogues Bearing Photoreactive Amino Acids2016

    • Author(s)
      Masuda Y, Aoyama K, Yoshida M, Kobayashi K, Ohshiro T, Tomoda H, Doi T.
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 64 Issue: 7 Pages: 754-765

    • DOI

      10.1248/cpb.c16-00095

    • NAID

      130005160040

    • ISSN
      0009-2363, 1347-5223
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Potent oxazoline analogue of apratoxin C: synthesis, biological evaluation, and conformational analysis.2016

    • Author(s)
      Yoshida, M., Onda, Y., Masuda, Y., Doi, T.
    • Journal Title

      Biopolymers (Peptide Science)

      Volume: 未定 Issue: 4 Pages: 404-414

    • DOI

      10.1002/bip.22781

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Solid-Phase Combinatorial Synthesis and Biological Evaluation of Destruxin E Analogues2015

    • Author(s)
      M. Yoshida, Y. Ishida, K. Adachi, H. Murase, H. Nakagawa. T. Doi
    • Journal Title

      Chemistry A European Journal

      Volume: 21 Issue: 50 Pages: 18417-18430

    • DOI

      10.1002/chem.201502970

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structure revision of similanamide to PF1171C by total synthesis.2015

    • Author(s)
      Masuda, Y., Tanaka, R., Ganesan, A., Doi, T.
    • Journal Title

      J. Nat. Prod.

      Volume: 78 Issue: 9 Pages: 2286-2291

    • DOI

      10.1021/acs.jnatprod.5b00643

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Total Synthesis and Conformational Analysis of Apratoxin C2014

    • Author(s)
      Y. Masuda, J. Suzuki, Y. Onda, Y. Fujino, M. Yoshida, T. Doi
    • Journal Title

      The Journal of Organic Chemistry

      Volume: 79 Issue: 17 Pages: 8000-8009

    • DOI

      10.1021/jo501130b

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 三次元構造に基づいたApratoxin A ミメティクスの創製2016

    • Author(s)
      恩田勇一,増田裕一,吉田将人,土井隆行
    • Organizer
      第34回メディシナルケミストリーシンポジウム
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] Synthesis and Biological Evaluation of Cyclodepsipeptide Natural Products2016

    • Author(s)
      T. Doi
    • Organizer
      The 10th International Symposium on Integrated Synthesis (ISONIS-10)
    • Place of Presentation
      Awaji Yumebutai International Conference
    • Year and Date
      2016-11-17
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 海洋シアノバクテリア由来の心筋分化誘導活性物質2016

    • Author(s)
      福島弘之,前島寛,魚崎英毅,松尾武彦,吉田将人,恩田勇一,鈴木淳,藤野雄太,増田裕一,八田知久,夏目徹,神平梨絵,坂本匠,新井大祐,堀越直樹,鯨井智也,胡桃坂仁志,伏谷伸宏,土井隆行,山下潤,中尾洋一
    • Organizer
      第58回天然有機化合物討論会
    • Place of Presentation
      東北大学川内萩ホール
    • Year and Date
      2016-09-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] Total synthesis of cyclodepsipeptide natural products and their biological evaluation2015

    • Author(s)
      T. Doi
    • Organizer
      PACIFICHEM2015
    • Place of Presentation
      Honolulu, Hawai, U.S.A.
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Combinatorial synthesis and biological evaluation of cyclodepsipeptide destruxin E analogues2015

    • Author(s)
      M. Yoshida, Y. Ishida, H. Sato, K. Adachi, H. Murase, H. Nakagawa, T. Doi
    • Organizer
      第52回ペプチド討論会
    • Place of Presentation
      平塚市中央公民館
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 骨吸収抑制作用を示すdestruxin E 類縁体の合成と生物活性評価2015

    • Author(s)
      佐藤寛,安達謙太,石田恵崇,村瀬隼人,中川大,吉田将人,土井隆行
    • Organizer
      第107回有機合成シンポジウム
    • Place of Presentation
      慶應義塾大学薬学部,東京
    • Year and Date
      2015-06-09
    • Related Report
      2015 Annual Research Report
  • [Presentation] 環状構造改変型デストラキシンE誘導体の合成と生物活性評価2015

    • Author(s)
      吉田将人,安達謙太,佐藤寛,村瀬隼人,中川大,土井隆行
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸学院大学、神戸
    • Year and Date
      2015-03-25 – 2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] Apratoxin C オキサゾリン誘導体の全合成2014

    • Author(s)
      恩田勇一,鈴木淳,吉田将人,増田裕一,土井隆行
    • Organizer
      第53回日本薬学会東北支部大会
    • Place of Presentation
      いわき明星大学、福島
    • Year and Date
      2014-10-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] 生物活性環状デプシペプチド天然物の全合成,誘導体合成,活性評価,機能構造解析2014

    • Author(s)
      土井隆行
    • Organizer
      平成26年度化学系学協会東北大会
    • Place of Presentation
      山形大学米沢キャンパス、米沢
    • Year and Date
      2014-09-20 – 2014-09-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Remarks] 東北大学薬学部、大学院薬学研究科反応制御化学分野Doi Laboratory論文発表

    • URL

      http://www.pharm.tohoku.ac.jp/~hannou/publication.html

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
  • [Remarks] 東北大学薬学部、大学院薬学研究科反応制御化学分野Doi Laboratory学会発表

    • URL

      http://www.pharm.tohoku.ac.jp/~hannou/presentation.html

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
  • [Remarks] Doi Laboratory, Publication List

    • URL

      http://www.pharm.tohoku.ac.jp/~hannou/publication-e.html

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report 2015 Annual Research Report
  • [Remarks] Doi Laboratory, Presentation in Symposium

    • URL

      http://www.pharm.tohoku.ac.jp/~hannou/presentation-e.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] Doi Laboratory, Presentations in Symposium

    • URL

      http://www.pharm.tohoku.ac.jp/~hannou/presentation-e.html

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
  • [Remarks] 東北大学薬学部,大学院薬学研究科反応制御化学分野Doi Laboratory論文発表

    • URL

      http://www.pharm.tohoku.ac.jp/~hannou/publication.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 東北大学薬学部,大学院薬学研究科反応制御化学分野Doi Laboratory学会発表

    • URL

      http://www.pharm.tohoku.ac.jp/~hannou/presentation.html

    • Related Report
      2015 Annual Research Report
  • [Patent(Industrial Property Rights)] 環状デプシペプチド化合物2016

    • Inventor(s)
      土井隆行,吉田将人,増田裕一,恩田勇一
    • Industrial Property Rights Holder
      土井隆行,吉田将人,増田裕一,恩田勇一
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2016-027262
    • Filing Date
      2016-02-16
    • Related Report
      2015 Annual Research Report

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Published: 2014-04-04   Modified: 2019-03-29  

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