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Elucidation of energy dissipation mechanism utilizing characteristic three-dimensional structures of proteins

Research Project

Project/Area Number 26288008
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Physical chemistry
Research InstitutionOsaka University

Principal Investigator

Mizutani Yasuhisa  大阪大学, 理学(系)研究科(研究院), 教授 (60270469)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥17,160,000 (Direct Cost: ¥13,200,000、Indirect Cost: ¥3,960,000)
Fiscal Year 2016: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2015: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2014: ¥7,670,000 (Direct Cost: ¥5,900,000、Indirect Cost: ¥1,770,000)
Keywordsラマン分光法 / 時間分解分光法 / 振動エネルギー緩和 / ラマン分光学 / 生物物理 / 時間分解分光学
Outline of Final Research Achievements

Vibrational energy flow in proteins was studied by monitoring the time-resolved anti-Stokes ultraviolet resonance Raman scattering of three myoglobin mutants in which a Trp residue substitutes a different residue near heme. The anti-Stokes Raman intensities of the Trp residue in the three mutants increased with similar rates after depositing excess energy at heme, despite the difference in distance between heme and each Trp residue along the main chain of the protein. This indicates that vibrational energy is transferred through atomic contacts between heme and the Trp residue. Distinct differences were observed in the amplitude of the band intensity change between the Trp residues at different positions, and the amplitude of the band intensity change exhibits a correlation with the extent of exposure of the Trp residue to solvent water. This correlation indicates that atomic contacts between a residue and solvent water play an important role in vibrational energy flow in a protein.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (20 results)

All 2017 2016 2015 2014 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (15 results) (of which Int'l Joint Research: 9 results,  Invited: 12 results) Remarks (3 results)

  • [Journal Article] Importance of Atomic Contacts in Vibrational Energy Flow in Proteins2016

    • Author(s)
      Masato Kondoh, Misao Mizuno, and Yasuhisa Mizutani
    • Journal Title

      J. Phys. Chem. Lett.

      Volume: 7 Issue: 11 Pages: 1950-1954

    • DOI

      10.1021/acs.jpclett.6b00785

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Observing Vibrational Energy Flow in a Protein with the Spatial Resolution of a Single Amino Acid Residue2014

    • Author(s)
      Naoki Fujii, Misao Mizuno, Haruto Ishikawa, and Yasuhisa Mizutani
    • Journal Title

      J. Phys. Chem. Lett.

      Volume: 5 Pages: 3269-3273

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Presentation] タンパク質内エネルギー移動の定量化に向けたアンチストークスラマンスペクトルの温度依存性の観測2017

    • Author(s)
      山下聡、水野操、水谷泰久
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      横浜
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] Direct Observation of Vibrational Energy Flow in Proteins by Time-resolved Resonance Raman Spectroscopy2017

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      Present and Future of Ultrafast Spectroscopy
    • Place of Presentation
      和光
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Importance of atomic contacts in vibrational energy flow in proteins2016

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      6th International Conference on Perspectives in Vibrational Spectroscopy
    • Place of Presentation
      Golden Blossom Imperial Resorts, Lucknow, India.
    • Year and Date
      2016-11-05
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 時間分解共鳴ラマン分光法の開拓とタンパク質ダイナミクス研究2016

    • Author(s)
      水谷泰久
    • Organizer
      九重分子科学セミナー2016
    • Place of Presentation
      大分
    • Year and Date
      2016-09-02
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Vibrational Energy Flow in Hemeproteins2016

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      The XXV International Conference on Raman Spectroscopy
    • Place of Presentation
      Fortaleza, Brazil
    • Year and Date
      2016-08-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Watching vibrational energy flow in proteins2016

    • Author(s)
      Yasuhisa Mizutani,
    • Organizer
      International Symposium: "Recent Progress in Molecular Spectroscopy and Dynamics"
    • Place of Presentation
      福岡
    • Year and Date
      2016-07-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] "Temporal Raman mapping of vibrational energy flow in hemeprotein2015

    • Author(s)
      Yasuhia Mizutani
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Watching energy flow in proteins2015

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      The Fifth Asian Spectroscopy Conference
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2015-09-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural Changes of Microbial Rhodopsins in Their Photocycles as Revealed by Time-resolved Visible and Ultraviolet Resonance Raman Spectroscopy2015

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      Telluride Science Research Center Workshop on Protein Dynamics
    • Place of Presentation
      Telluride, Colorado, USA
    • Year and Date
      2015-08-03
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Time-resolved Raman Mapping of Vibrational Energy Flow in Hemeproteins2015

    • Author(s)
      Yasuhisa Mizutani, Naoki Fujii, Masato Kondoh, Mitsuhiro Miyamoto, Misao Mizuno, and Haruto Ishikawa
    • Organizer
      Seventeenth International Conference on Time-resolved Vibrational Spectroscopy
    • Place of Presentation
      Madison, Wisconsin, USA
    • Year and Date
      2015-06-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Anisotropy of intraprotein vibrational energy transfer monitored by time-resolved anti-Stokes ultraviolet resonance Raman spectroscopy2015

    • Author(s)
      Masato Kondoh, Misao Mizuno and Yasuhisa Mizutani
    • Organizer
      Seventeenth International Conference on Time-resolved Vibrational Spectroscopy
    • Place of Presentation
      Madison, Wisconsin, USA
    • Year and Date
      2015-06-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structure changes of microbial rhodopsins in their photocycles as revealed by time-resolved visible and ultraviolet resonance Raman spectroscopy2014

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-06 – 2014-10-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Time-resolved Observation of Functionally-important Molecular Flexibility of Proteins2014

    • Author(s)
      水谷泰久
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌コンベンションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] タンパク質内エネルギー散逸のラマン時空間マッピング2014

    • Author(s)
      水谷泰久
    • Organizer
      第8回分子科学討論会
    • Place of Presentation
      広島大学東広島キャンパス(広島県東広島市)
    • Year and Date
      2014-09-21 – 2014-09-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Time-resolved resonance Raman spectroscopy on retinal proteins2014

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      16th International Congress on Photobiology
    • Place of Presentation
      Cordoba (Argentina)
    • Year and Date
      2014-09-07 – 2014-09-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Remarks] 大阪大学 大学院理学研究科 化学専攻 生物物理化学研究室 ホームページ

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/mizutani/index-jp.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 大阪大学 大学院理学研究科 化学専攻 生物物理化学研究室

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/mizutani/index-jp.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 大阪大学大学院理学研究科 水谷研究室

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/mizutani/index-jp.html

    • Related Report
      2014 Annual Research Report

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Published: 2014-04-04   Modified: 2018-03-22  

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