Understanding coral population structure using genomics analyses
| Project/Area Number |
26290065
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| Research Category |
Grant-in-Aid for Scientific Research (B)
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| Allocation Type | Partial Multi-year Fund |
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| Section | 一般 |
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| Research Field |
Genome biology
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| Research Institution | The University of Tokyo (2016-2017)
Okinawa Institute of Science and Technology Graduate University (2014-2015) |
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Principal Investigator |
Shinzato Chuya 東京大学, 大気海洋研究所, 准教授 (70524726)
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| Co-Investigator(Kenkyū-buntansha) |
酒井 一彦 琉球大学, 熱帯生物圏研究センター, 教授 (50153838)
中島 祐一 沖縄科学技術大学院大学, 海洋生態物理学ユニット, 研究員 (50581708)
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| Research Collaborator |
ZAYASU Yuna 沖縄科学技術大学院大学, マリンゲノミックスユニット, 研究員 (50746691)
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| Project Period (FY) |
2014-04-01 – 2018-03-31
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| Project Status |
Completed (Fiscal Year 2017)
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| Budget Amount *help |
¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
Fiscal Year 2016: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2015: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
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| Keywords | サンゴ / 集団遺伝 / SNP / ゲノム / 南西諸島 / 集団解析 |
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| Outline of Final Research Achievements |
In this project we performed population genomics analyses of corals in Nansei Islands, southern-western Japan, where coral reefs around the area are regarded as a marine biodiversity hotspot. Firstly we investigated population structure of a coral Acropora digitifera whose genome was decoded. Taking advantage of the decoded genome and using genome-wide SNP analyses, we clarified the detailed population structure around Okinawa. In addition, using the coral genome data and big DNA sequencing data produced by next-generation sequencing technology, we developed molecular markers that could be used for studying population genetics of wide range of Acropora coral species. We investigated population structure of natural coral reefs and genetic diversity of farmed corals using the markers. These methods were also applied for development of molecular markers and studying population genetics of other marine organisms.
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Report
(5 results)
Research Products
(16 results)
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[Journal Article] Development of novel, cross-species microsatellite markers for Acropora corals using next-generation sequencing technology.2014
Author(s)
Shinzato, C., Yasuoka, Y., Mungpakdee, D., Arakaki, N., Fujie, M., Nakajima, Y., Satoh, N.
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Journal Title
Front. Mar. Sci.,
Volume: 2014
Pages: 1-14
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
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