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Development of a novel genome editing-mediated gene knock-in system

Research Project

Project/Area Number 26290070
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field System genome science
Research InstitutionHiroshima University

Principal Investigator

Yamamoto Takashi  広島大学, 理学(系)研究科(研究院), 教授 (90244102)

Co-Investigator(Kenkyū-buntansha) 谷口 俊介  筑波大学, 生命環境科学研究科(系), 准教授 (00505331)
Co-Investigator(Renkei-kenkyūsha) AIDA TOMOMI  東京医科歯科大学, 難治疾患研究所, 准教授 (50540481)
SAKAMOTO NAOAKI  広島大学, 大学院理学研究科, 准教授 (00332338)
SUZUKI KENICHI  広島大学, 大学院理学研究科, 特任准教授 (90363043)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥17,680,000 (Direct Cost: ¥13,600,000、Indirect Cost: ¥4,080,000)
Fiscal Year 2016: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2015: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2014: ¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
Keywordsバイオテクノロジー / ゲノム編集
Outline of Final Research Achievements

In this study, I established microhomology-mediated end-joining (MMEJ) dependent gene knock-in system that I termed precise integration into target chromosome (PITCh). I performed reporter gene knock-in experiments using PITCh system in cultured cells and animals such as frog and mice. As results, I observed efficient and precise gene knock-in by PITCh method compared with those achieved by HR-mediated gene knock-in. Additionally, I performed genetic screening of MMEJ enhancers and identified that PITCh efficiency upon Exonuclease I (ExoI) overexpression was increased to 2.5 fold compared with that upon mock overexpression. I also confirmed the effect of ExoI overexpression in endogenous gene locus in cultured cells and mouse zygote.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (20 results)

All 2017 2016 2015 2014 Other

All Journal Article (7 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 7 results,  Open Access: 6 results,  Acknowledgement Compliant: 4 results) Presentation (8 results) (of which Invited: 7 results) Book (1 results) Remarks (4 results)

  • [Journal Article] Gene cassette knock-in in mammalian cells and zygotes by enhanced MMEJ.2016

    • Author(s)
      Aida T, Nakade S, Sakuma T, Izu Y, Oishi A, Mochida K, Ishikubo H, Usami T, Aizawa H, Yamamoto T, Tanaka K.
    • Journal Title

      BMC Genomics

      Volume: 17 Issue: 1 Pages: 979-979

    • DOI

      10.1186/s12864-016-3331-9

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ultra-superovulation for the CRISPR-Cas9-mediated production of gene-knockout, single- amino-acid-substituted, and floxed mice2016

    • Author(s)
      Yoshiko Nakagawa, Tetsushi Sakuma, Norihisa Nishimichi, Yasuyuki Yokosaki, Noriyuki Yanaka, Toru Takeo, Naomi Nakagata and Takashi Yamamoto
    • Journal Title

      Biology Open

      Volume: 5 Issue: 8 Pages: 1142-1148

    • DOI

      10.1242/bio.019349

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Rapid and efficient analysis of gene function using CRISPR-Cas9 in Xenopus tropicalis founders2016

    • Author(s)
      Shigeta, Mitsuki; Sakane, Yuto; Iida, Midori; Suzuki, Miyuki; Kashiwagi, Keiko; Kashiwagi, Akihiko; Fujii, Satoshi; Yamamoto, Takashi; Suzuki, Ken-ichi
    • Journal Title

      Genes to Cells

      Volume: in press Issue: 7 Pages: 755-771

    • DOI

      10.1111/gtc.12379

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] MMEJ-assisted gene knock-in using TALENs and CRISPR-Cas9 with the PITCH systems.2016

    • Author(s)
      Sakuma T, Nakade S, Sakane Y, Suzuki K, Yamamoto T.
    • Journal Title

      Nature Protocols

      Volume: 11 Issue: 1 Pages: 118-113

    • DOI

      10.1038/nprot.2015.140

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The Expression of TALEN before Fertilization Provides a Rapid Knock-Out Phenotype in Xenopus laevis Founder Embryos.2015

    • Author(s)
      Miyamoto K, Suzuki K, Suzuki M, Sakane Y, Sakuma T, Herberg S, Simeone A, Simpson D, Jullien J, Yamamoto T, Gurdon JB.
    • Journal Title

      PLOS ONE

      Volume: 10(11) Issue: 11 Pages: e0142946-e0142946

    • DOI

      10.1371/journal.pone.0142946

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Homologous recombination-independent large gene cassette knock-in in CHO cells using TALEN and MMEJ-directed donor plasmids.2015

    • Author(s)
      Sakuma, T., Takenaga, M., Kawabe, Y., Nakamura, T., Kamihira, M. & Yamamoto, T.
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 16 Issue: 10 Pages: 23849-23866

    • DOI

      10.3390/ijms161023849

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microhomology-mediated end-joining-dependent integration of donor DNA in cells and animals using TALENs and CRISPR/Cas92014

    • Author(s)
      S. Nakade, T. Tsubota, Y. Sakane, S. Kume, N. Sakamoto, M. Obara, T. Daimon, H. Sezutsu, T. Yamamoto, T. Sakuma and K. T. Suzuki
    • Journal Title

      Nat Commun

      Volume: 5 Issue: 1 Pages: 5560-5560

    • DOI

      10.1038/ncomms6560

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] ゲノム編集技術の基本原理 と医学研究での利用2017

    • Author(s)
      山本 卓
    • Organizer
      第16回日本再生医療学会総会
    • Place of Presentation
      仙台
    • Year and Date
      2017-03-07
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] ゲノム編集の基本原理と医学分野での利用2016

    • Author(s)
      山本 卓
    • Organizer
      第31回 日本整形外科学会基礎学術集会
    • Place of Presentation
      福岡
    • Year and Date
      2016-10-10
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] ゲノム編集の基本原理と最近の研究動向2016

    • Author(s)
      山本 卓
    • Organizer
      日本学術会議公開学術講演会「ゲノム編集技術の技術と将来展望」
    • Place of Presentation
      東京
    • Year and Date
      2016-08-19
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] ゲノム編集の基本原理と研究動向2016

    • Author(s)
      山本 卓
    • Organizer
      JBAセミナー「ゲノム編集技術の最近の動向と規制・特許について」
    • Place of Presentation
      東京
    • Year and Date
      2016-03-17
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ゲノム編集の基本原理と医学分野での可能性2015

    • Author(s)
      山本 卓
    • Organizer
      日本人類遺伝学会第60回大会
    • Place of Presentation
      東京
    • Year and Date
      2015-10-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ゲノム編集が生命科学に革命を起こす2015

    • Author(s)
      山本 卓
    • Organizer
      読売テクノフォーラム
    • Place of Presentation
      東京
    • Year and Date
      2015-06-22
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] MMEJ-mediated integration of donor DNA in cells and animals using TALENs and CRISPR/Cas92015

    • Author(s)
      Nakade S, Tsubota T, Sakane Y, Kume S, Sakamoto N, Obara M, Daimon T, Sezutsu H, Yamamoto T, Sakuma T and Suzuki KI
    • Organizer
      Keystone Sympsia
    • Place of Presentation
      Big Sky, MT, USA
    • Year and Date
      2015-01-11 – 2015-01-16
    • Related Report
      2014 Annual Research Report
  • [Presentation] Genome editing in cultured cells and animals using TALENs and CRISPR/Cas2014

    • Author(s)
      Yamamoto T
    • Organizer
      The 3rd “International Institute for Advanced Studies” Conference of Novel Developments on the Study of Life and Biological Systems Based on Genome Engineering and Imaging Science
    • Place of Presentation
      木津川市
    • Year and Date
      2014-10-28 – 2014-10-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] ゲノム編集入門2016

    • Author(s)
      山本 卓
    • Total Pages
      20
    • Publisher
      裳華房
    • Related Report
      2016 Annual Research Report
  • [Remarks] 広島大学大学院理学研究科分子遺伝学研究室

    • URL

      http://www.mls.sci.hiroshima-u.ac.jp/smg/index.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 広島大学分子遺伝学研究室

    • URL

      http://www.mls.sci.hiroshima-u.ac.jp/smg/index.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 分子遺伝学研究室

    • URL

      http://www.mls.sci.hiroshima-u.ac.jp/smg/index.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] ゲノム編集コンソーシアム

    • URL

      http://www.mls.sci.hiroshima-u.ac.jp/smg/genome_editing/index.html

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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