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Analysis of molecular mechanism for initial left-right axis formation in the node of mouse embryos

Research Project

Project/Area Number 26291051
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Developmental biology
Research InstitutionKyushu University

Principal Investigator

Chikara Meno  九州大学, 医学研究院, 教授 (20311764)

Co-Investigator(Renkei-kenkyūsha) OKI Shinya  九州大学, 医学研究院, 助教 (90452713)
KITAJIMA Keiko  九州大学, 医学研究院, 助教 (00332784)
OHKAWA Yasuyuki  九州大学, 生体防御医学研究所, 教授 (80448430)
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,640,000 (Direct Cost: ¥12,800,000、Indirect Cost: ¥3,840,000)
Fiscal Year 2016: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2014: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Keywords左右軸 / データベース / ChIP-seq / 遺伝子発現 / データーベース / 胚発生 / 左右軸形成 / 発生・分化 / ChIPシークエンス / 次世代シークエンス / ソフトウェア
Outline of Final Research Achievements

The node appears in early mouse embryo and functions as a generator of left-right axis. Since this function depends on spatiotemporal information and interaction with adjacent tissues, associating the node with embryonic system is an important view to understand left-right axis formation. In this project, we analyzed the gene regulation by Nodal signal which is required for node and left-right axis formation, and also examined the expression mechanism for Wnt3a which is required for the expression on left-right axis related genes around the node. Additionally, we developed SraTailor and ChIP-Atlas which were utilized in above project. ChIP-Atlas is an integrated database by which proteins-DNA interactions based on all ChIP-seq data are displayed on IGV genome browser.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (22 results)

All 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 5 results,  Acknowledgement Compliant: 3 results) Presentation (13 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results) Remarks (2 results)

  • [Int'l Joint Research] Newcastle University(英国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells2017

    • Author(s)
      Semba Yuichiro、Harada Akihito、Maehara Kazumitsu、Oki Shinya、Meno Chikara、Ueda Jun、Yamagata Kazuo、Suzuki Atsushi、Onimaru Mitsuho、Nogami Jumpei、Okada Seiji、Akashi Koichi、Ohkawa Yasuyuki
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Issue: 15 Pages: 8758-8772

    • DOI

      10.1093/nar/gkx475

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Leukotriene B4 receptor type 2 (BLT2) enhances skin barrier function by regulating tight junction proteins.2016

    • Author(s)
      Ishii Y, Saeki K, Liu M, Sasaki F, Koga T, Kitajima K, Meno C, Okuno T, Yokomizo T
    • Journal Title

      FASEB J

      Volume: 30 Issue: 2 Pages: 933-947

    • DOI

      10.1096/fj.15-279653

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Hyperglycemia impairs left-right axis formation and thereby disturbs heart morphogenesis in mouse embryos.2015

    • Author(s)
      Hachisuga M, Oki S, Kitajima K, Ikuta S, Sumi T, Kato K, Wake N, Meno C.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 112 Issue: 38 Pages: 5300-5307

    • DOI

      10.1073/pnas.1504529112

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Chd5 Regulates MuERV-L/MERVL Expression in Mouse Embryonic Stem Cells Via H3K27me3 Modification and Histone H3.1/H3.2.2015

    • Author(s)
      Hayashi M, Maehara K, Harada A, Semba Y, Kudo K, Takahashi H, Oki S, Meno C, Ichiyanagi K, Akashi K, Ohkawa Y.
    • Journal Title

      J Cell Biochem

      Volume: 117 Issue: 3 Pages: 780-792

    • DOI

      10.1002/jcb.25368

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The importance of being isomeric.2015

    • Author(s)
      Anderson RH, Brown NA, Meno C, Spicer DE
    • Journal Title

      Clinical Anatomy

      Volume: 28 Issue: 4 Pages: 477-486

    • DOI

      10.1002/ca.22517

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SraTailor: graphical user interface software for processing and visualizing ChIP-seq data.2014

    • Author(s)
      Oki S, Maehara K, Ohkawa Y, Meno C
    • Journal Title

      Genes to Cells

      Volume: 19 Issue: 12 Pages: 919-926

    • DOI

      10.1111/gtc.12190

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Integrative analysis of transcription factor occupancy at enhancers and disease risk loci in noncoding genomic regions2018

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda, Hideya Kawaji, Ryo Nakaki, Jun Sese, Chikara Meno
    • Organizer
      Keystone Symposium; Gene Control in Development and Disease
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Integrative analysis of transcription factor occupancy at enhancers and disease risk loci in noncoding genomic regions2017

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda, Hideya Kawaji, Ryo Nakaki, Jun Sese, Chikara Meno
    • Organizer
      50th Annual Meeting of the Japanese Society of Developmental Biologists
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 既報の ChIP-seq データの利活用術2017

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 畠中 秀樹, 小笠原 理, 奥田 喜広, 川路 英哉, 仲木 竜, 瀬々 潤, 目野 主税
    • Organizer
      第4回 発生における代謝を考える会
    • Place of Presentation
      京都大学
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] The transcription factor landscape decodes the enhancers and risk variants in non-coding regions2017

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda, Hideya Kawaji, Ryo Nakaki, Jun Sese, Chikara Meno
    • Organizer
      Keystone Symposium; Epigenetics and Human Disease: Progress from Mechanisms to Therapeutics
    • Place of Presentation
      Seattle
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ChIP-Atlas: Comprehensive and integrative database for visualizing and mining all published ChIP-seq data.2016

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Ryo Nakaki, Osamu Ogasawara, Yoshihiro Okuda, Hideki Hatanaka, Chikara Meno
    • Organizer
      SYSTEMS BIOLOGY: GLOBAL REGULATION OF GENE EXPRESSION
    • Place of Presentation
      Cold spring harbor laboratory, USA
    • Year and Date
      2016-03-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 妊娠前糖尿病における左右軸形成異常2016

    • Author(s)
      蜂須賀 正紘、北島 桂子 、沖 真弥、生田 智美、目野 主税
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 網羅的かつ統合的な ChIP-seq データの解析2016

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 畠中 秀樹, 小笠原 理, 奥田 喜広, 川路 英哉, 仲木 竜, 瀬々 潤, 目野 主税
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2016 Annual Research Report
  • [Presentation] 既報のChIP-seqデータをフル活用するための統合データベース2015

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 仲木 竜, 目野 主税
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      横浜市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ChIP-seq SRA を利活用するための統合データベース2015

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 目野 主税
    • Organizer
      NGS現場の会第四回研究会
    • Place of Presentation
      つくば市
    • Year and Date
      2015-07-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ChIP-Atlas: Comprehensive database for visualizing all published ChIP-seq data2015

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Chikara Meno
    • Organizer
      48th Annual Meeting of JSDB
    • Place of Presentation
      つくば市
    • Year and Date
      2015-06-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] SraTailor: 誰でも使えるChIP-seqデータの可視化ツール2014

    • Author(s)
      沖 真弥, 前原 一満, 大川 恭行, 目野 主税
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      横浜市
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 高血糖症はマウス胚の左右軸形成を阻害することで心臓形態形成を撹乱する2014

    • Author(s)
      蜂須賀 正紘、沖 真弥、北島 桂子、角 智行、目野 主税
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      横浜市
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] SraTailor: GUI software for visualizing high-throughput sequence read archives2014

    • Author(s)
      Shinya Oki, Kazumitsu Maehara, Yasuyuki Ohkawa, Chikara Meno
    • Organizer
      47th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      名古屋市
    • Year and Date
      2014-05-28
    • Related Report
      2014 Annual Research Report
  • [Remarks] ChIP-Atlas

    • URL

      http://chip-atlas.org

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report 2015 Annual Research Report
  • [Remarks]

    • URL

      http://www.devbio.med.kyushu-u.ac.jp/sra_tailor/

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2022-01-31  

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