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Gene regulatory network underlying plant organ growth

Research Project

Project/Area Number 26291064
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Plant molecular biology/Plant physiology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Sugimoto Keiko  国立研究開発法人理化学研究所, 環境資源科学研究センター, チームリーダー (30455349)

Co-Investigator(Renkei-kenkyūsha) Breuer Christian  国立研究開発法人理化学研究所, 環境資源科学研究センター, 研究員 (90525859)
HARASHIMA Hirofumi  国立研究開発法人理化学研究所, 環境資源科学研究センター, 研究員 (00700113)
Research Collaborator Rymen Bart  国立研究開発法人理化学研究所, 環境資源科学研究センター, 研究員 (80737255)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥15,860,000 (Direct Cost: ¥12,200,000、Indirect Cost: ¥3,660,000)
Fiscal Year 2016: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2015: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Keywords植物ホルモン・成長生理・全能性 / 細胞分化 / 細胞周期 / 遺伝子発現調節 / 発生遺伝
Outline of Final Research Achievements

Plant organ growth is mediated by a balanced progression of cell division and differentiation. Plant cells udergo massive transcriptional changes when they transit from proliferateive to differentiation phases but how these modifications in gene expression are regulated is not well understood. From a new genetic screen we have recently identified several putative transcriptional regulators that might mediate these transcriptional responses. In this study we investigated functional roles of these new regulators and we showed that a DOF transcriptional factor OBP4 negatively regulates root hair growth.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (30 results)

All 2017 2016 2015 2014 Other

All Journal Article (12 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 12 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (15 results) (of which Int'l Joint Research: 5 results,  Invited: 1 results) Remarks (3 results)

  • [Journal Article] ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.2017

    • Author(s)
      Rymen, B., Kawamura, A., Schafer, S., Breuer, C., Iwase, A., Shibata, M., Ikeda, M., Mitsuda, N., Koncz, C., Ohme-Takagi, M., Matsui, M., and Sugimoto, K.
    • Journal Title

      Plant physiology

      Volume: 173 Issue: 3 Pages: 1750-1762

    • DOI

      10.1104/pp.16.01945

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Shoot removal induces chloroplast development in roots via cytokinin signaling2017

    • Author(s)
      Koichi Kobayashi, Ai Ohnishi, Daichi Sasaki, Sho Fujii, Akira Iwase, Keiko Sugimoto, Tatsuru Masuda and Hajime Wada
    • Journal Title

      Plant Physiology

      Volume: 173 Issue: 4 Pages: 2340-2355

    • DOI

      10.1104/pp.16.01368

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular networks orchestrating plant cell growth.2017

    • Author(s)
      Franciosini, A., Rymen, B., Shibata, M., Favero, D.S., and Sugimoto, K.
    • Journal Title

      Current opinion in plant biology

      Volume: 35 Pages: 98-104

    • DOI

      10.1016/j.pbi.2016.11.010

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis.2016

    • Author(s)
      Weimer, A.K., Biedermann, S., Harashima, H., Roodbarkelari, F., Takahashi, N., Foreman, J., Guan, Y., Pochon, G., Heese, M., Van Damme, D., Sugimoto, K., Koncz, C., Doerner, P., Umeda, M., Schnittger, A.
    • Journal Title

      EMBO J

      Volume: 35 Issue: 19 Pages: 2068-2086

    • DOI

      10.15252/embj.201593083

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] SUPPRESSOR OF PHYTOCHROME B4-#3 represses genes associated with auxin signaling to modulate hypocotyl growth.2016

    • Author(s)
      Favero DS, Jacques CN, Iwase A, Le KN, Zhao J, Sugimoto K, Neff MM.
    • Journal Title

      Plant Physiol

      Volume: 171(4) Issue: 4 Pages: 2701-2716

    • DOI

      10.1104/pp.16.00405

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Integration of developmental and environmental signals into cell proliferation and differentiation through RETINOBLASTOMA-RELATED 12016

    • Author(s)
      Harashima H and Sugimoto K.
    • Journal Title

      Curr Opin in Plant Biol

      Volume: 15 Pages: 683-690

    • DOI

      10.1016/j.pbi.2015.12.003

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional conservation in the SIAMESE-RELATED family of Cyclin-dependent kinase inhibitors in land plants2015

    • Author(s)
      Kumar N, Harashima H, Kalve S, Bramsiepe J, Wang K, Sizani BL, Bertrand LL, Johnson MC, Faulk C, Dale R, Simmons LA, Churchman ML, Sugimoto K, Kato N, Dasanayake M, Beemster G, Schnittger A, Larkin JC
    • Journal Title

      Plant Cell

      Volume: 27 Issue: 11 Pages: 3065-3080

    • DOI

      10.1105/tpc.15.00489

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Transcriptional repression by MYB3R proteins regulates plant organ growth.2015

    • Author(s)
      Kobayashi K, Suzuki T, Iwata E, Nakamichi N, Suzuki T, Chen P, Ohtani M, Ishida T, Hosoya H, Müller S, Leviczky T, Pettkó-Szandtner A, Darula Z, Iwamoto A, Nomoto M, Tada Y, Higashiyama T, Demura T, Doonan JH, Hauser MT, Sugimoto K, Umeda M, Magyar Z, Bögre L, Ito M
    • Journal Title

      EMBO Journal

      Volume: 34 Issue: 15 Pages: 1992-2007

    • DOI

      10.15252/embj.201490899

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Stimulation of cell elongation by tetraploidy in hypocotyls of dark-grown Arabidopsis seedlings.2015

    • Author(s)
      Narukawa, H., Yokoyama, R., Komaki, S., Sugimoto, K., Nishitani, K.
    • Journal Title

      PLoS One

      Volume: 10 Issue: 8 Pages: e0134547-e0134547

    • DOI

      10.1371/journal.pone.0134547

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Differential regulation of B2-type CDK accumulation in Arabidopsis roots2014

    • Author(s)
      Okushima, Y., Shimizu, K., Ishida, T., Sugimoto, K. and Umeda, M.
    • Journal Title

      Plant Cell Rep.

      Volume: 33 Issue: 7 Pages: 1033-1040

    • DOI

      10.1007/s00299-014-1581-z

    • NAID

      120006537389

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Endocycling in the path of plant development.2014

    • Author(s)
      Breuer C, Braidwood L, Sugimoto K
    • Journal Title

      Current Opinion in Plant Biology

      Volume: 17 Pages: 78-85

    • DOI

      10.1016/j.pbi.2013.11.007

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] My body is a cage: Mechanisms and modulation of plant cell growth2014

    • Author(s)
      Braidwood L, Breuer C, Sugimoto K.
    • Journal Title

      New Phytologist,

      Volume: 201(2) Issue: 2 Pages: 388-402

    • DOI

      10.1111/nph.12473

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Presentation] Two transcription factors govern root hair growth in Arabidopsis2017

    • Author(s)
      Shibata M, Breuer C,Kawamura A, Rymen B, Watt L, Clark N, Braidwood L, Sozzani R, Benfey P, Sugimoto K
    • Organizer
      第58回日本植物生理学会年会
    • Place of Presentation
      鹿児島大学、鹿児島県
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] A trihelix transcription factor GTL1 regulates root hair development in Arabidopsis2016

    • Author(s)
      Shibata M, Breuer C,Kawamura A, Rymen B, Watt L, Clark N, Braidwood L, Sozzani R, Benfey P, Sugimoto K
    • Organizer
      Latest Advances in Plant Development & Environmental Response, CSH Conferences Asia
    • Place of Presentation
      淡路夢舞台、兵庫県淡路市
    • Year and Date
      2016-11-29
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] シロイヌナズナRETINOBLASTOMA-RELATED PROTEIN 1に着目したG1-S期制御機構の解析2016

    • Author(s)
      原島 洋文
    • Organizer
      第 57 回日本植物生理学会年会
    • Place of Presentation
      岩手大学、岩手
    • Year and Date
      2016-03-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] Transcriptional control of root hair growth under adverse conditions2015

    • Author(s)
      Bart Rymen
    • Organizer
      The 1st meeting of Young Scientists for Integrative system of autonomous environmental signal recognition and memorization for plant plasticity
    • Place of Presentation
      ホテルウェルシーズン浜名湖、静岡
    • Year and Date
      2015-11-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] Retinoblastoma resets the cell cycle after S phase through a system of interconnected feedback loops2015

    • Author(s)
      原島 洋文
    • Organizer
      The 1st meeting of Young Scientists for Integrative system of autonomous environmental signal recognition and memorization for plant plasticity
    • Place of Presentation
      ホテルウェルシーズン浜名湖、静岡
    • Year and Date
      2015-11-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] Cessation of root-hair elongation by phosphate signaling2015

    • Author(s)
      柴田 美智太郎
    • Organizer
      第1回 環境記憶若手の会
    • Place of Presentation
      ホテルウェルシーズン浜名湖、静岡
    • Year and Date
      2015-11-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] Transcriptional control of root hair growth under adverse conditions2015

    • Author(s)
      Bart Rymen
    • Organizer
      International ERATO Higashiyama Live-Holonics Symposium
    • Place of Presentation
      名古屋大学、愛知
    • Year and Date
      2015-08-27
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Transcriptional control of root hair length in Arabidopsis2015

    • Author(s)
      柴田 美智太郎
    • Organizer
      International ERATO Higashiyama Live-Holonics Symposium 2015
    • Place of Presentation
      名古屋大学、愛知
    • Year and Date
      2015-08-27
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Transcriptional control of root hair growth under adverse conditions2015

    • Author(s)
      Bart Rymen
    • Organizer
      International Conference of Arabidopsis Research 2015
    • Place of Presentation
      Palais des congres, France
    • Year and Date
      2015-07-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Retinoblastoma resets the cell cycle after S phase through a system of interconnected feedback loops2015

    • Author(s)
      原島 洋文
    • Organizer
      International Conference of Arabidopsis Research 2015
    • Place of Presentation
      Palais des congres, France
    • Year and Date
      2015-07-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] RBR1に着目したG1-S期制御機構の解明2015

    • Author(s)
      原島 洋文
    • Organizer
      2015年度細胞周期合同セミナー
    • Place of Presentation
      サンヒルズ三河湾
    • Year and Date
      2015-06-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] 根毛の伸長成長を抑制する転写因子GT-2ファミリーの機能2015

    • Author(s)
      柴田 美智太郎
    • Organizer
      2015年度細胞周期合同セミナー
    • Place of Presentation
      サンヒルズ三河湾、愛知
    • Year and Date
      2015-06-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] Chemical genetic approach to identify the substrates of plant cyclin-dependent kinases2014

    • Author(s)
      原島洋文、Philippe Hammann, 杉本慶子、Arp Schnittger
    • Organizer
      The 38th Naito Conference on Molecule-based biological systems
    • Place of Presentation
      シャトレーゼ ガトーキングダム サッポロ(札幌市)
    • Year and Date
      2014-10-07 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] To grow or not to grow: plant growth signaling under environmental limiting conditions2014

    • Author(s)
      Bart Rymen, 岩瀬哲、杉本慶子
    • Organizer
      The 38th Naito Conference on Molecule-based biological systems
    • Place of Presentation
      シャトレーゼ ガトーキングダム サッポロ(札幌市)
    • Year and Date
      2014-10-07 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Transcriptional regulation of organ growth under limiting conditions2014

    • Author(s)
      Bart Rymen, 池田美穂、光田展隆、高木優、松井南、杉本慶子
    • Organizer
      The 25th International Conference on Arabidopsis Research
    • Place of Presentation
      University of British Columbia, Canada
    • Year and Date
      2014-07-28 – 2014-08-01
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Remarks] Cell Function Research Team

    • URL

      http://cellfunction.riken.jp/

    • Related Report
      2016 Annual Research Report
  • [Remarks] Cell Function Research Team

    • URL

      http://cellfunction.riken.jp/TOP_E.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 研究室ホームページ

    • URL

      http://cellfunction.riken.jp/index.html

    • Related Report
      2014 Annual Research Report

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Published: 2014-04-04   Modified: 2018-03-22  

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