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Evolution of genomic structure and expression pattern of antimicrobial peptide genes in Drosophila species

Research Project

Project/Area Number 26291074
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Evolutionary biology
Research InstitutionTokyo Metropolitan University

Principal Investigator

Tamura Koichiro  首都大学東京, 理工学研究科, 教授 (00254144)

Co-Investigator(Kenkyū-buntansha) 高橋 文  首都大学東京, 理工学研究科, 准教授 (90370121)
Research Collaborator SETO Yosuke  首都大学東京, 理工学研究科, 特任研究員 (50738614)
MIYASHITA Takayuki  首都大学東京, 理工学研究科, 大学院生
ICHIKAWA Risa  首都大学東京, 理工学研究科, 大学院生
SEINO Kenji  首都大学東京, 理工学研究科, 大学院生
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥15,860,000 (Direct Cost: ¥12,200,000、Indirect Cost: ¥3,660,000)
Fiscal Year 2016: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2015: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Keywords抗菌ペプチド / 微生物耐性 / 比較トランスクリプトーム / RNA-seq / 遺伝子重複 / 環境適応 / ショウジョウバエ / トランスクリプトーム / 遺伝子発現 / 抗カビ耐性 / 腸内細菌叢 / 進化 / 食物選択 / 適応進化 / 遺伝子進化 / カビ耐性
Outline of Final Research Achievements

To clarify evolutionary mechanisms for the adaptation of Drosophila species to various microbial environments, inter- and intra-species variations of genomic structure and expression pattern of antimicrobial peptide genes were investigated. (1) Transcriptome analyses by RNA-seq for eight Drosophila species inhabiting various microbial environments revealed extensive inter-specific variations in the expression of antimicrobial peptide genes. (2) Investigation of genomic structure and expression pattern of drosomycin genes for the species belonging to the melanogaster species group revealed a substantial degree of inter- and intra-species variations in the genomic structure and expression pattern of drosomycin genes. These findings suggested that substantial evolutionary changes in the genomic structure and the expression pattern of antimicrobial peptide genes underlay the adaptive evolution of Drosophila species to various microbial environments.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (30 results)

All 2016 2015 2014

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (27 results) (of which Int'l Joint Research: 7 results,  Invited: 6 results)

  • [Journal Article] Ancient male recombination shaped genetic diversity of neo-Y chromosome in Drosophila albomicans2016

    • Author(s)
      Satomura K, Tamura K.
    • Journal Title

      Molecular Biology and Evolution

      Volume: 33 Issue: 2 Pages: 367-374

    • DOI

      10.1093/molbev/msv221

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A molecular evolutionary reference for the human variome2016

    • Author(s)
      Liu L, Tamura K, Sanderford M, Gray VE, Kumar S.
    • Journal Title

      Molecular Biology and Evolution

      Volume: 33 Issue: 1 Pages: 245-254

    • DOI

      10.1093/molbev/msv198

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive identification of odorant-binding protein genes in the seed fly, Delia platura (Diptera: Anthomyiidae)2015

    • Author(s)
      Ohta S, Seto Y, Tamura K, Ishikawa Y, Matsuo T.
    • Journal Title

      Applied Entomology and Zoology

      Volume: 50 Issue: 4 Pages: 457-463

    • DOI

      10.1007/s13355-015-0353-8

    • NAID

      40020659575

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Presentation] 食性の異なるショウジョウバエにおける抗カビ免疫システムの種間比較解析2016

    • Author(s)
      瀬戸陽介,田村浩一郎
    • Organizer
      日本遺伝学会 第88回大会
    • Place of Presentation
      日本大学国際関係学部 三島駅北口校舎
    • Year and Date
      2016-09-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] キイロショウジョウバエ種群におけるカビ感染時の腸内細菌叢の変動2016

    • Author(s)
      清野健司,瀬戸陽介,田村浩一郎
    • Organizer
      日本遺伝学会 第88回大会
    • Place of Presentation
      日本大学国際関係学部 三島駅北口校舎
    • Year and Date
      2016-09-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] 食性の異なるショウジョウバエにおける抗真菌免疫システムの分子進化2016

    • Author(s)
      瀬戸陽介,田村浩一郎
    • Organizer
      日本進化学会第18回大会
    • Place of Presentation
      東京工業大学 大岡山キャンパス
    • Year and Date
      2016-08-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] キイロショウジョウバエ種群におけるカビ感染時の腸内細菌叢の変動2016

    • Author(s)
      清野健司,瀬戸陽介,田村浩一郎
    • Organizer
      日本進化学会第18回大会
    • Place of Presentation
      東京工業大学 大岡山キャンパス
    • Year and Date
      2016-08-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Comparative RNA-seq analysis of antifungal immune responses among Drosophila species2016

    • Author(s)
      Yosuke Seto, Koichiro Tamura
    • Organizer
      Annual Meeting of the Society for Molecular Biology and Evolution 2016
    • Place of Presentation
      Gold Coast Convention & Exhibition Centre, Australia
    • Year and Date
      2016-07-03
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Transcriptomic response for cold adaptation in Drosophila2016

    • Author(s)
      Isobe K, Takahashi A, Tamura K
    • Organizer
      Germany & Japan Workshop on Evolutionary Genomics 2016
    • Place of Presentation
      国立遺伝学研究所(静岡県三島市)
    • Year and Date
      2016-03-22
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular phylogenetic analyses using MEGA software2015

    • Author(s)
      Tamura K
    • Organizer
      International Symposium on Evolutionary Genomics and Bioinformatics 2015
    • Place of Presentation
      Academia Sinica (Taiwan)
    • Year and Date
      2015-11-07
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ショウジョウバエ抗カビ免疫システムの種間比較解析2015

    • Author(s)
      瀬戸陽介,田村浩一郎
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2015-09-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] アカショウジョウバエのNeo-Y染色体の遺伝的多様性2015

    • Author(s)
      里村和浩,田村浩一郎
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2015-09-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] キハダショウジョウバエ種内における抗菌ペプチドDrosomycin遺伝子の多様性2015

    • Author(s)
      市川里紗,瀬戸陽介,田村浩一郎
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2015-09-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] Pooled RNA-Seqを用いたアカショウジョウバエ適応進化の検出2015

    • Author(s)
      中村遥,田村浩一郎
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2015-09-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] 進化パターンの変化による分子系統解析の歪みとデータフィルタリングによるその抑制(2)2015

    • Author(s)
      岩本栄介,田村浩一郎
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2015-09-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 次世代データの系統解析New Technology -プロローグ:次世代系統解析の問題と課題-2015

    • Author(s)
      田村浩一郎
    • Organizer
      日本進化学会第17回大会
    • Place of Presentation
      中央大学(東京都文京区)
    • Year and Date
      2015-08-23
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 抗真菌耐性の異なるショウジョウバエ種間における比較トランスクリプトーム解析2015

    • Author(s)
      瀬戸陽介,田村浩一郎
    • Organizer
      日本進化学会第17回大会
    • Place of Presentation
      中央大学(東京都文京区)
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] アカショウジョウバエの Neo-Y 染色体の進化における組換えの影響2015

    • Author(s)
      里村和浩,田村浩一郎
    • Organizer
      日本進化学会第17回大会
    • Place of Presentation
      中央大学(東京都文京区)
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] 進化パターンの変化による分子系統解析の歪みとデータフィルタリングによるその抑制(2)2015

    • Author(s)
      岩本栄介,田村浩一郎
    • Organizer
      日本進化学会第17回大会
    • Place of Presentation
      中央大学(東京都文京区)
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] キハダショウジョウバエ種内における抗菌ペプチドDrosomycin遺伝子の分子進化2015

    • Author(s)
      市川里紗,瀬戸陽介,田村浩一郎
    • Organizer
      日本進化学会第17回大会
    • Place of Presentation
      中央大学(東京都文京区)
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] Pooled RNA-Seqを用いたアカショウジョウバエ適応進化の検出2015

    • Author(s)
      中村遥,田村浩一郎
    • Organizer
      日本進化学会第17回大会
    • Place of Presentation
      中央大学(東京都文京区)
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] Evolution of the immigrans species group revealed by using big sequence data2015

    • Author(s)
      Seto Y and Tamura K
    • Organizer
      SMBE 2015
    • Place of Presentation
      Hofburg Palace (Austria)
    • Year and Date
      2015-07-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Failure of phylogenetic tree reconstruction by heterogeneous substitution pattern among lineages and the method for its recovery2015

    • Author(s)
      Iwamoto E, Tamura K
    • Organizer
      SMBE 2015
    • Place of Presentation
      Hofburg Palace (Austria)
    • Year and Date
      2015-07-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ancient male recombination shaped genetic diversity of neo-Y chromosome in Drosophila albomicans2015

    • Author(s)
      Satomura K, Tamura K
    • Organizer
      SMBE 2015
    • Place of Presentation
      Hofburg Palace (Austria)
    • Year and Date
      2015-07-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 集団・進化遺伝学から見た放射線の生物への影響2015

    • Author(s)
      田村浩一郎
    • Organizer
      日本保健物理学会第48回研究発表会
    • Place of Presentation
      首都大学東京荒川キャンパス(東京都荒川区)
    • Year and Date
      2015-07-02
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Ancient male recombination shaped genetic diversity of neo-Y chromosome in Drosophila albomicans2015

    • Author(s)
      Satomura K, Tamura K
    • Organizer
      Evolution 2015
    • Place of Presentation
      Casa Grande Resort (Brazil)
    • Year and Date
      2015-06-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 遺伝子発現調節の変化による環境適応形質の進化2014

    • Author(s)
      田村浩一郎
    • Organizer
      日本遺伝学会第86回大会
    • Place of Presentation
      長浜バイオ大学(滋賀県・長浜市)
    • Year and Date
      2014-09-19
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] キイロショウジョウバエ種群における抗菌ペプチド遺伝子Dro3の発現パターンの進化2014

    • Author(s)
      宮下孝幸
    • Organizer
      日本進化学会第16回大会
    • Place of Presentation
      高槻現代劇場(大阪府・高槻市)
    • Year and Date
      2014-08-21 – 2014-08-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] キハダショウジョウバエ種内における抗菌ペプチドDrosomycin遺伝子群の多様性2014

    • Author(s)
      市川里紗
    • Organizer
      日本進化学会第16回大会
    • Place of Presentation
      高槻現代劇場(大阪府・高槻市)
    • Year and Date
      2014-08-21 – 2014-08-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] カビ感染に対するショウジョウバエ免疫応答の比較発現解析2014

    • Author(s)
      瀬戸陽介
    • Organizer
      日本比較免疫学会第26回学術集会
    • Place of Presentation
      東北大学(宮城県・仙台市)
    • Year and Date
      2014-07-09
    • Related Report
      2014 Annual Research Report

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Published: 2014-04-04   Modified: 2018-03-22  

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