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Elucidation of molecular mechanism of macroevolution

Research Project

Project/Area Number 26291075
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Evolutionary biology
Research InstitutionFoundation for Advancement of International Science

Principal Investigator

Okada Norihiro  公益財団法人国際科学振興財団, その他部局等, 主席研究員 (60132982)

Co-Investigator(Kenkyū-buntansha) 西原 秀典  東京工業大学, 生命理工学研究科, 助教 (10450727)
二階堂 雅人  東京工業大学, 生命理工学研究科, 准教授 (70432010)
Co-Investigator(Renkei-kenkyūsha) NIKAIDO MASATO  東京工業大学, 生命理工学研究科, 准教授 (70432010)
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥15,730,000 (Direct Cost: ¥12,100,000、Indirect Cost: ¥3,630,000)
Fiscal Year 2016: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2015: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Keywords大進化 / 転移因子 / レトロポゾン / 闘魚 / 戦い / RNA-seq / シンクロナイズ / ベタ / SINE / Wint5a / 二次口蓋 / 同調 / エンハンサー / WGCNA / RNA発現 / マウス / 哺乳類 / 進化
Outline of Final Research Achievements

The project, named "Elucidation of molecular mechanism of macroevolution" can b e divided into two parts. One is about the contribution of transposable elements which were inserted into genomes on macroevolution. We elucidated the enhancer of Wint5a responsible for making the secondary palate can be divided into three parts, each of which was inserted into the genome at the different time of evolution and played a different role in its function.
The second is about what the fighting is. The fighting is the important and conserved behavior of animals because a population led by a strong boss can survive more easily. Using a fighting fish pair, we elucidated that the transcripts of two individuals of a fighting pair are synchronized. This is a very interesting and new discovery.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (14 results)

All 2017 2016 2015 2014

All Journal Article (13 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 13 results,  Open Access: 11 results,  Acknowledgement Compliant: 6 results) Book (1 results)

  • [Journal Article] Visual adaptation in Lake Victoria cichlid fishes: depth-related variation of color and scotopic opsins in species from sand/mud bottoms2017

    • Author(s)
      Y Terai, R Miyagi, M Aibara, S Mizoiri, H Imai, T Okitsu, A Wada, ...N. Okada
    • Journal Title

      BMC evolutionary biology

      Volume: 17 Issue: 1 Pages: 1-12

    • DOI

      10.1186/s12862-017-1040-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate.2016

    • Author(s)
      Nishihara H., Kobayashi N., Kimura-Yoshida C., Yan K., Bormuth O., Ding Q., Nakanishi A., Sasaki T., Hirakawa M., Sumiyama K., Furuta Y., Tarabykin V., Matsuo I., and Okada N.
    • Journal Title

      PLoS Genet.

      Volume: 12(10) Issue: 10 Pages: 1-17

    • DOI

      10.1371/journal.pgen.1006380

    • NAID

      120005997729

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular developmental mechanism in polypterid fish provides insight into the origin of vertebrate lungs.2016

    • Author(s)
      Norifumi Tatsumi, Ritsuko Kobayashi, Tohru Yano, Masatsugu Noda, Koji Fujimura, Norihiro Okada & Masataka Okabe
    • Journal Title

      Scientific Reports

      Volume: July Issue: 1 Pages: 1-10

    • DOI

      10.1038/srep30580

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals.2016

    • Author(s)
      Nishihara, H., Plazzi, F., Passamonti, M. and Okada, N.
    • Journal Title

      Genome Biology and Evolution

      Volume: 8 Issue: 3 Pages: 528-539

    • DOI

      10.1093/gbe/evw029

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A microsatellite-based genetic linkage map and putative sex-determining genomic regions in Lake Victoria cichlids.2015

    • Author(s)
      Kudo Y., Nikaido M., Kondo A., Suzuki H., Yoshida K., Kikuchi K., Okada N.
    • Journal Title

      Gene

      Volume: 560 Issue: 2 Pages: 156-164

    • DOI

      10.1016/j.gene.2015.01.057

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Determining the Position of Storks on the Phylogenetic Tree of Waterbirds by Retroposon Insertion Analysis.2015

    • Author(s)
      Kuramoto, T., Nishihara, H., Watanabe, M. and Okada, N.
    • Journal Title

      Genome Biology and Evolution

      Volume: 7 Issue: 12 Pages: 3180-3189

    • DOI

      10.1093/gbe/evv213

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] LINE retrotransposition and host DNA repair machinery.2015

    • Author(s)
      Yamaguchi K, Kajikawa M, Okada N.
    • Journal Title

      Mob Genet Elements.

      Volume: 5 Issue: 6 Pages: 92-97

    • DOI

      10.1080/2159256x.2015.1096998

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Integrated mechanism for the generation of the 5' junctions of LINE inserts.2014

    • Author(s)
      Yamaguchi K., Kajikawa M. and Okada N.
    • Journal Title

      Nucleic Acids Research

      Volume: 42 Issue: 21 Pages: 13269-13279

    • DOI

      10.1093/nar/gku1067

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] High prevalence of non-synonymous substitutions in mtDNA of cichlid fishes from Lake Victoria.2014

    • Author(s)
      Shirai K, Inomata N, Mizoiri S, Aibara M, Terai Y, Okada N, Tachida H.
    • Journal Title

      Gene

      Volume: 552 Issue: 2 Pages: 239-245

    • DOI

      10.1016/j.gene.2014.09.039

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The genomic substrate for adaptive radiation in African cichlid fish2014

    • Author(s)
      Brawand D et al. (Nikaido M 75人中45番目)
    • Journal Title

      Nature

      Volume: 513 Issue: 7518 Pages: 375-381

    • DOI

      10.1038/nature13726

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism by which a LINE protein recognizes its 3' tail RNA.2014

    • Author(s)
      Hayashi Y., Kajikawa M., Matsumoto T. and Okada N.
    • Journal Title

      Nucleic Acids Research

      Volume: 42 Issue: 16 Pages: 10605-10617

    • DOI

      10.1093/nar/gku753

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Multiple episodic evolution events in V1R receptor genes of East-African cichlids.2014

    • Author(s)
      Nikaido M, Ota T, Hirata T, Satta Y, Saito Y, Aibara M, Mzighani SI, Hagino-Yamagishi K, Sturmbauer C, Okada N.
    • Journal Title

      Genome Biology and Evolution

      Volume: 6 Issue: 5 Pages: 1135-1144

    • DOI

      10.1093/gbe/evu086

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Evolutionary changes in vertebrate genome signatures with special focus on coelacanth.2014

    • Author(s)
      Iwasaki Y, Abe T, Okada N, Wada K, Wada Y, Ikemura T.
    • Journal Title

      DNA Reseach

      Volume: 21 Issue: 5 Pages: 459-467

    • DOI

      10.1093/dnares/dsu012

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Book] 科学者の冒険2017

    • Author(s)
      岡田典弘
    • Total Pages
      283
    • Publisher
      クバプロ
    • Related Report
      2016 Annual Research Report

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Published: 2014-04-04   Modified: 2019-03-29  

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