• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Study of population dynamics of host population during viral infection

Research Project

Project/Area Number 26291092
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Ecology/Environment
Research InstitutionOkayama University

Principal Investigator

Ueki Shoko  岡山大学, その他部局等, 助教 (50622023)

Co-Investigator(Kenkyū-buntansha) 佐藤 昌直  慶應義塾大学, その他の研究科, 助教 (20517693)
中山 奈津子  国立研究開発法人水産研究・教育機構, その他部局等, 研究員 (20612675)
Research Collaborator Higashi Aiko  岡山大学, 資源植物科学研究所, 非常勤研究員
Kobashi Rieko  岡山大学, 資源植物科学研究所, 非常勤職員
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥15,990,000 (Direct Cost: ¥12,300,000、Indirect Cost: ¥3,690,000)
Fiscal Year 2016: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2015: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2014: ¥8,970,000 (Direct Cost: ¥6,900,000、Indirect Cost: ¥2,070,000)
Keywords宿主 / ウイルス / 個体群 / 感染 / 遺伝子型 / 大型DNAウイルス / 赤潮原因藻 / 生態学 / 生理生態 / 混合個体群 / ヘテロシグマ
Outline of Final Research Achievements

The initial goal of the project was to analyze the infection process of Heterosigma akashiwo virus (HaV) to its host population, bloom-forming algae, Heterosigma akashiwo, that consisted from strains showing the different reactions to HaV infection. During the project, we completed the whole genome sequencing and gene predictions of HaV, and obtained the insights into the evolutionary and phylogenetical position to other giant double-stranded DNA viruses. In addition, contradicting to the initial understanding, we found out that the host reactions to HaV infection were not only determined by the host genotypes, but also by the presence/absence or the species of the accomplice bacteria associating to the host. The project developed into direction unpredicted when it was initially planed: however, the insights obtained by the project will provide infrastructure for future studies about H. akashiwo and its virus from cellular and molecular biology view points.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (15 results)

All 2017 2016 2015 2014 Other

All Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 5 results,  Acknowledgement Compliant: 6 results) Presentation (6 results) (of which Int'l Joint Research: 2 results) Remarks (3 results)

  • [Journal Article] A unique, highly variable mitochondrial gene with coding capacity of Heterosigma akashiwo, class Raphidophyceae2017

    • Author(s)
      Higashi A, Nagai S, Salomon P. S. and Ueki S*
    • Journal Title

      Journal of Applied Phycology

      Volume: -

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A hypervariable mitochondrial protein coding sequence associated with geographical origin in a cosmopolitan bloom-forming alga, Heterosigma akashiwo2017

    • Author(s)
      Higashi A, Nagai, S, Seone S. and Ueki S*
    • Journal Title

      Biology Letters

      Volume: -

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Evolution and Phylogeny of large DNA viruses, Mimiviridae and Phycodnaviridae including newly characterized Heterosigma akashiwo virus2016

    • Author(s)
      Maruyama F. and Ueki S*.
    • Journal Title

      Frontiers in Microbiology

      Volume: 2016

    • NAID

      120005980911

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The complete genome sequence of Phycodnavirus, Heterosigma akashiwo virus strain 532016

    • Author(s)
      Ogura Y, Hayashi T, and Ueki S*
    • Journal Title

      Genome Annoucements

      Volume: 4

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Mitochondrial genome sequences of four strains of bloom-forming raphidophyceae, Heterosigma akashiwo2016

    • Author(s)
      Ogura Y, Nakayama N, Hayashi T, and Ueki S*
    • Journal Title

      Genome Annoucements

      Volume: 4

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Growth promotion of Heterosigma akashiwo by marine microorganisms; implication of marine bacterium in bloom formation2015

    • Author(s)
      Shoko Ueki
    • Journal Title

      Proceeding of the 16th International Conference of Harmful Algae

      Volume: 1

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Heterosigma akashiwo virus遺伝子;その構造と大型dsDNAウイルスにおける進化的・分類学的位置付け2016

    • Author(s)
      丸山 史人、植木 尚子
    • Organizer
      ファージ・環境ウイルス合同シンポジウム
    • Place of Presentation
      横須賀
    • Year and Date
      2016-10-21
    • Related Report
      2016 Annual Research Report
  • [Presentation] Characterization of genome organization of a phycodnavirus, Heterosigma akashiwo virus2016

    • Author(s)
      Ueki S
    • Organizer
      The 8th Aquatic Virus Workshop
    • Place of Presentation
      Plymouth, UK
    • Year and Date
      2016-07-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Characterization of genome organization of a phycodnavirus, Heterosigma akashiwo virus2016

    • Author(s)
      Shoko Ueki
    • Organizer
      Aquatic Virus Workshop
    • Place of Presentation
      Plymouth, United Kingdom
    • Year and Date
      2016-07-10
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 大型二本鎖 DNA ウイルスの感染過程の解析2016

    • Author(s)
      植木 尚子
    • Organizer
      ゲノム微生物学会
    • Place of Presentation
      東京工業大学70周年記念館
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] 赤潮原因藻ヘテロシグマに感染する大型dsDNAウイルスHeterosigma akashiwo virusの感染過程について2015

    • Author(s)
      植木 尚子
    • Organizer
      微生物生態学会
    • Place of Presentation
      茨城県 土浦市市民会館
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Growth promotion of Heterosigma akashiwo by marine microorganisms; implication of marine bacterium in bloom formation2014

    • Author(s)
      Shoko Ueki
    • Organizer
      The 16th International Conference of Harmful Algae 2014
    • Place of Presentation
      Wellington, New Zealand
    • Year and Date
      2014-10-26 – 2014-11-01
    • Related Report
      2014 Annual Research Report
  • [Remarks] 赤潮原因藻ヘテロシグマに感染する大型DNA ウイルスの進化と分類に関する研究

    • URL

      http://www.rib.okayama-u.ac.jp/researchactivity/20161220-1.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 赤潮原因藻ヘテロシグマのミトコンドリア・ゲノム上に存在する水域特異的な超可変領域配列についての研究

    • URL

      http://www.rib.okayama-u.ac.jp/researchactivity/170414-2.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 赤潮原因藻ヘテロシグマのミトコンドリア・ゲノム上に存在する超可変タンパク質コード領域についての研究

    • URL

      http://www.rib.okayama-u.ac.jp/researchactivity/170414-3.html

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi