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Studies on sex-chromosome turnover and evolution of secondary sexual characteristics in the family Adrianichthyidae

Research Project

Project/Area Number 26291093
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Ecology/Environment
Research InstitutionUniversity of the Ryukyus

Principal Investigator

YAMAHIRA Kazunori  琉球大学, 熱帯生物圏研究センター, 教授 (20322589)

Co-Investigator(Kenkyū-buntansha) 北野 潤  国立遺伝学研究所, 集団遺伝研究系, 教授 (80346105)
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥15,990,000 (Direct Cost: ¥12,300,000、Indirect Cost: ¥3,690,000)
Fiscal Year 2016: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2015: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2014: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Keywords進化 / 生態 / 性淘汰 / スラウェシ / 生態学 / 種分化 / メダカ
Outline of Final Research Achievements

In this study, we tested the possibility that sex-chromosome turnover led to rapid evolution of secondary sexual characteristics in medaka fishes in Sulawesi Island. Analyses of population structures and sex-determination systems using sex-linked markers revealed that the Malili medaka species complex diverged into six populations while being mixed with each other by a certain degree of gene flows, and that sex-determination systems are polytypic with sex-chromosome turnovers among the species/populations. QTL mapping using an inter-specific cross line revealed that male-specific fin reddishness of the Muna medaka species complex is regulated by an autosomal gene, but that multiple loci may be involved in male-specific body blueness.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (41 results)

All 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (4 results) Journal Article (16 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 16 results,  Open Access: 4 results,  Acknowledgement Compliant: 7 results) Presentation (16 results) (of which Int'l Joint Research: 6 results,  Invited: 4 results) Book (3 results) Remarks (2 results)

  • [Int'l Joint Research] Sam Ratulangi University/Haluoleo University/LIPI(インドネシア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Sam Ratulangi University/Haluoleo University/LIPI(インドネシア)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Sam Ratulangi University/LIPI(インドネシア)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Phylogenomics reveals habitat-associated body shape divergence in Oryzias woworae species group (Teleostei: Adrianichthyidae)2018

    • Author(s)
      Mokodongan DF, Montenegro J, Mochida K, Fujimoto S, Ishikawa A, Kakioka R, Yong L, Mulis, Hadiaty RK, Mandagi IF, Masengi WA, Wachi N, Hashiguchi Y, Kitano J, Yamahira K
    • Journal Title

      Molecular Phylogenetics and Evolution

      Volume: 118 Pages: 194-203

    • DOI

      10.1016/j.ympev.2017.10.005

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Phylogeography of the eight-barbel loach Lefua nikkonis (Cypriniformes: Nemacheilidae): how important were straits in northern Japan as biogeographical barriers?2018

    • Author(s)
      Ooyagi A, Mokodongan DF, Montenegro J, Mandagi IF, Koizumi N, Machida Y, Inomata N, Shdedko SV, Hutama AA, Hadiaty RK, Yamahira K
    • Journal Title

      Ichthyological Research

      Volume: 65 Issue: 1 Pages: 115-126

    • DOI

      10.1007/s10228-017-0597-0

    • NAID

      40021440782

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Male courtship activeness of Oryzias latipes in Okinawa Island2017

    • Author(s)
      Fujimoto S, Yamahira K
    • Journal Title

      The Biological Magazine Okinawa

      Volume: 55 Pages: 11-17

    • NAID

      40021212840

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] New localities of the Oryzias woworae species group (Adrianichthyidae) in Sulawesi Tenggara2016

    • Author(s)
      Yamahira K, Mochida K, Fujimoto S, Mokodongan DF, Montenegro J, Kaito T, Ishikawa A, Kitano J, Sue T, Mulis, Hadiaty RK, Mandagi IF, Masengi AKW
    • Journal Title

      Indonesian Journal of Ichthyology

      Volume: 16 Pages: 125-131

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Variation in male courtship activeness between latitudinal populations of Northern medaka2016

    • Author(s)
      Sasaki T, Yamahira K
    • Journal Title

      Ichthyological Research

      Volume: 63 Issue: 2 Pages: 302-306

    • DOI

      10.1007/s10228-015-0484-5

    • NAID

      40020816041

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Variation in the ontogeny of sex steroid levels between latitudinal populations of the medaka.2015

    • Author(s)
      Kawajiri M., Uchida K., Chiba H., Moriyama S., Yamahira K.
    • Journal Title

      Zoological Letters

      Volume: 1 Issue: 1 Pages: 31-31

    • DOI

      10.1186/s40851-015-0032-1

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Origin and intra-island diversification of Sulawesi endemic Adrianichthyidae2015

    • Author(s)
      Mokodongan DF, Yamahira K
    • Journal Title

      Molecular Phylogenetics and Evolution

      Volume: 93 Pages: 150-160

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Genetic architecture of the variation in male-specific ossified processes on the anal fins of Japanese medaka2015

    • Author(s)
      Kawajiri M, Fujimoto S, Yoshida K, Yamahira K, Kitano J
    • Journal Title

      G3-Genes Genomes Genetics

      Volume: 5 Issue: 12 Pages: 2875-2884

    • DOI

      10.1534/g3.115.021956

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Mitochondrialandnuclearphylogenetictrees and divergencetimeestimationsofSulawesi endemic Adrianichthyidae2015

    • Author(s)
      Mokodongan DF, Yamahira K
    • Journal Title

      Data in Brief

      Volume: 5 Pages: 281-284

    • DOI

      10.1016/j.ympev.2015.07.024

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Latitudinal Variation in Male Competitiveness and Female Choosiness in a Fish: Are Sexual Selection Pressures Stronger at Lower Latitudes?2015

    • Author(s)
      Shingo Fujimoto, Takashi Miyake and Kazunori Yamahira
    • Journal Title

      Evolutionary biology

      Volume: 42 Issue: 1 Pages: 75-87

    • DOI

      10.1007/s11692-014-9300-9

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Female Mate Preference for Longer Fins in Medaka2014

    • Author(s)
      Shingo Fujimoto, Maiko Kawajiri, Jun Kitano and Kazunori Yamahira
    • Journal Title

      Zoological Science

      Volume: 31 Issue: 11 Pages: 703-708

    • DOI

      10.2108/zs140102

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Ontogenetic stage-specific quantitative trait loci contribute to divergence in developmental trajectories of sexually dimorphic fins between medaka populations2014

    • Author(s)
      Maiko Kawajiri, Kohta Yoshida, Shingo Fujimoto, Daniel Frikli Mokodongan, Mark Ravinet, Mark Kirkpatrick, Kazunori Yamahira, Jun Kitano
    • Journal Title

      Molecular Ecology

      Volume: 23 Issue: 21 Pages: 5129-5391

    • DOI

      10.1111/mec.12933

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interpopulation variation in female color-type frequency of Ischnura senegalensis in Okinawa Island, Japan (Odonata: Coenagrionidae)2014

    • Author(s)
      Sawada K, Yamahira K, Kuriwada T
    • Journal Title

      Odonatologica

      Volume: 43 Pages: 227-235

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A new ricefish of the genus Oryzias (Beloniformes, Adrianichthyidae) from Lake Tiu, Central Sulawesi, Indonesia2014

    • Author(s)
      Mokodongan, DF, Tanaka R, Yamahira K
    • Journal Title

      Copeia

      Volume: 2014 Issue: 3 Pages: 561-567

    • DOI

      10.1643/ci-13-081

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The loaches of the genus Nemacheilus (Teleostei: Nemacheilidae) in Sunda Islands, with an identification key2014

    • Author(s)
      Hadiaty RK, Yamahira K
    • Journal Title

      Indonesian Journal of Ichthyology

      Volume: 14 Pages: 83-100

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and validation of eight microsatellite loci in a damselfly Ischnura senegalensis (Odonata: Coenagrionidae) by pyrosequencing a bead-enriched library2014

    • Author(s)
      Kurita T, Aoyama H, Saitoh S, Shinzato N, Sawada K, Kuriwada T, Hironaka K, Inomata N, Yamahira K, Toda M
    • Journal Title

      Applied Entomology and Zoology

      Volume: 49 Issue: 4 Pages: 623-626

    • DOI

      10.1007/s13355-014-0292-9

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Presentation] メダカの緯度クラインの研究:生活史から種分化へ2018

    • Author(s)
      山平寿智
    • Organizer
      第65回日本生態学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Highly-structured freshwater fish populations within a single river system2018

    • Author(s)
      Mandagi IF, Lawelle SA, Masengi KWA, Mokodongan DF, Nagano AJ, Matsunami M, Kimura R, Yamahira K
    • Organizer
      第65回日本生態学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Just-completed sympatric speciation in an ancient lake2018

    • Author(s)
      Nobu S, Mokodongan DF, Nagano AJ, Matsunami M, Kimura R, Yamahira K
    • Organizer
      第65回日本生態学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] メダカ科魚類における性的二型の多様化をもたらす遺伝基盤2017

    • Author(s)
      安齋賢,持田浩治,藤本真悟,Mokodongan DF,永野惇,山平寿智,北野潤
    • Organizer
      第64回日本生態学会大会
    • Place of Presentation
      早稲田大学,東京新宿区
    • Year and Date
      2017-03-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] エゾホトケLefua nikkonisの集団遺伝学的解析:特に黒松内低地帯の集団の系統的特異性に着目して2017

    • Author(s)
      山平寿智
    • Organizer
      平成28年度黒松内生物多様性保全奨励事業成果発表会
    • Place of Presentation
      黒松内町コミュニティ防災センター,北海道黒松内町
    • Year and Date
      2017-03-04
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Convergent evolution of body coloration in genus Oryzias and Nomorhamphus in Sulawesi-tenggara2017

    • Author(s)
      Montenegro J, Mochida K, Sugiuchi S, Matsui K, Fujimoto S, Mokodongan DF, Ishikawa A, Kitano J, Yong L, Mandagi IF, Masengi KWA, Hadiaty RK, Yamahira K
    • Organizer
      Congress of the European Society for Evolutionary Biology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Population structures of adrianichthyids in the Malili Lakes System2017

    • Author(s)
      Yamahira K
    • Organizer
      3rd Southeast Asian Gateway Evolution Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Species and genetic diversity of medaka fishes (the family Adrianichthyidae) in Southeast Sulawesi2017

    • Author(s)
      Yamahira K, Mokodongan DF, Lawelle SA, Masengi AKW
    • Organizer
      The 1st International Seminar on Sustainability in the Marine Fisheries Sector 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] メダカの湧き出る魔法の島スラウェシ2016

    • Author(s)
      山平寿智
    • Organizer
      シーラカンスワークショップ一般講演
    • Place of Presentation
      アクアマリンふくしま,茨城県いわき市
    • Year and Date
      2016-11-03
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Evolution of body coloration in two sympatric freshwater fishes: a test of the sensory-driven hypothesis2016

    • Author(s)
      Montenegro J, Mochida K, Sugiuchi S, Matsui K, Fujimoto S, Mokodongan DF, Ishikawa A, Kitano J, Mandagi IF, Masengi AKW, Hadiaty RK, Yamahira K
    • Organizer
      21st Evolutionary Biology Meeting
    • Place of Presentation
      Marseilles, France
    • Year and Date
      2016-09-23
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Life-history adaptations and the latitudinal diversity gradient in medaka fishes2016

    • Author(s)
      Yamahira K
    • Organizer
      The 2016 (26th) Annual Meeting of the Japanese Society for Mathematical Biology
    • Place of Presentation
      Kyushu University, Fukuoka City, Fukuoka
    • Year and Date
      2016-09-08
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Diversity and evolution of Sulawesi endemic Adrianichthyidae2016

    • Author(s)
      Yamahira K
    • Organizer
      IKAN-9 (9th Meeting of Indonesian Society of Ichthyology)
    • Place of Presentation
      Jakarta, Indonesia
    • Year and Date
      2016-05-24
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] メダカ属魚類における体色の多様化をもたらす生理生態メカニズム(I)2016

    • Author(s)
      藤本真悟,持田浩治,杉内信哉,松井久実,北野潤,Mokodongan,石川麻乃,Hadiaty RK,Masengi AKW,山平寿智
    • Organizer
      第63回日本生態学会大会
    • Place of Presentation
      仙台市国際センター
    • Year and Date
      2016-03-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] メダカ属魚類における体色の多様化をもたらす生理生態メカニズム(II)2016

    • Author(s)
      持田浩治,杉内信哉,松井久実,北野潤,藤本真悟,Mokodongan DF,石川麻乃,Mandagi IF,Masengi AKW,Hadiaty RK,山平寿智
    • Organizer
      第63回日本生態学会大会
    • Place of Presentation
      仙台市国際センター
    • Year and Date
      2016-03-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] Origin and intra-island diversification of Sulawesi endemic Adrianichthyidae2015

    • Author(s)
      Mokodongan DF, Yamahira K
    • Organizer
      第48回日本魚類学会年会
    • Place of Presentation
      近畿大学奈良キャンパス
    • Year and Date
      2015-09-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] 高緯度における繁殖の季節的集中がもたらす実効性比の偏りの消失2014

    • Author(s)
      藤本真悟,山平寿智
    • Organizer
      第59回日本生態学会九州地区会
    • Place of Presentation
      琉球大学
    • Year and Date
      2014-05-24
    • Related Report
      2014 Annual Research Report
  • [Book] メダカ科魚類の鰭の形態と機能の多様性について(月刊アクアライフ2017-11)2017

    • Author(s)
      山平寿智
    • Total Pages
      2
    • Publisher
      エムピージェー
    • Related Report
      2017 Annual Research Report
  • [Book] メダカ科魚類の系統進化と地理的分布について(月刊アクアライフ編‘メダカ飼いたい新書’)2016

    • Author(s)
      山平寿智
    • Total Pages
      2
    • Publisher
      エムピージェー
    • Related Report
      2016 Annual Research Report
  • [Book] なぜ熱帯のメダカは派手で多様なのか?(月刊アクアライフ編‘メダカ飼いたい新書’)2016

    • Author(s)
      山平寿智
    • Total Pages
      12
    • Publisher
      エムピージェー
    • Related Report
      2016 Annual Research Report
  • [Remarks] 世界のメダカ研究室

    • URL

      http://ny-tbrc.jimdo.com/

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
  • [Remarks] http://ny-tbrc.jimdo.com/

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2019-03-29  

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