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Clarification of genes related to key traits in the early stage of rice domestication

Research Project

Project/Area Number 26292004
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Science in genetics and breeding
Research InstitutionKobe University

Principal Investigator

Ishii Takashige  神戸大学, 農学研究科, 教授 (20260648)

Co-Investigator(Renkei-kenkyūsha) ISHIKAWA Ryo  神戸大学, 農学研究科, 助教 (70467687)
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥15,470,000 (Direct Cost: ¥11,900,000、Indirect Cost: ¥3,570,000)
Fiscal Year 2017: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2016: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2015: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2014: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Keywordsイネ / 栽培化 / 野生イネ
Outline of Final Research Achievements

A closed panicle is one of the key traits in the early stage of rice domestication. This trait is considered to lead significant reduction in seed shedding and outcrossing rate. Here, we first fine-mapped chromosomal regions responsible for the panicle shape, i.e., OsLG1 regulatory region and minor locus on chromosome 5. Seed awning and floral morphology are co-related to the seed shedding and pollination behavior, respectively. Genetic controls of these traits were also investigated. The above results confirmed that many loci of these traits were involved in rice domestication.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (24 results)

All 2018 2017 2016 2015

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Acknowledgement Compliant: 2 results,  Open Access: 3 results) Presentation (17 results) (of which Int'l Joint Research: 4 results,  Invited: 1 results) Book (1 results)

  • [Journal Article] Estimation of loci involved in non-shattering of seeds in early rice domestication2017

    • Author(s)
      Ryo Ishikawa, Akinori Nishimura, Than Myint Htun, Ryo Nishioka, Yumi Oka, Yuki Tsujimura, Chizuru Inoue, Takashige Ishii
    • Journal Title

      Genetica

      Volume: 145 Issue: 2 Pages: 201-207

    • DOI

      10.1007/s10709-017-9958-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Identification of quantitative trait loci controlling floral morphology of rice using a backcross population between common cultivated rice, Oryza sativa and Asian wild rice, O. rufipogon2017

    • Author(s)
      Ishikawa R, Watabe T, Nishioka R, Thanh PT, Ishii T
    • Journal Title

      Am J Plant Sci

      Volume: 08 Issue: 04 Pages: 734-744

    • DOI

      10.4236/ajps.2017.84051

    • NAID

      120006365365

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene interaction at seed-awning loci in the genetic background of wild rice2017

    • Author(s)
      Ikemoto M, Otsuka M, Thanh PT, Phan PDT, Ishikawa R, Ishii T
    • Journal Title

      Genes & Genetic Systems

      Volume: 92 Issue: 1 Pages: 21-26

    • DOI

      10.1266/ggs.16-00058

    • NAID

      130006073270

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic survey of genomic regions responsible for panicle spreading in wild rice, <i>Oryza rufipogon</i>2016

    • Author(s)
      Nishioka R, Mikazuki H, Htun TM, Ishikawa R, Ishii T
    • Journal Title

      Journal of Crop Research

      Volume: 61 Issue: 0 Pages: 23-26

    • DOI

      10.18964/jcr.61.0_23

    • NAID

      130006900263

    • ISSN
      1882-885X, 2424-1318
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation of shooting and rooting ability from nodes and ratooning ability using backcross recombinant inbred lines between <i>Oryza rufipogon</i> and <i>O. sativa</i>2016

    • Author(s)
      Ikemoto M, Ohyagi T, Thanh PT, Ishikawa R, Ishii T
    • Journal Title

      Journal of Crop Research

      Volume: 61 Issue: 0 Pages: 13-17

    • DOI

      10.18964/jcr.61.0_13

    • NAID

      130006900267

    • ISSN
      1882-885X, 2424-1318
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Inhibition of abscission layer formation by an interaction of two seed-shattering loci, <i>sh4</i> and <i>qSH3</i>, in rice2015

    • Author(s)
      Chizuru Inoue, Than Myint Htun, Kanako Inoue, Ken-ichi Ikeda, Takashige Ishii, Ryo Ishikawa
    • Journal Title

      Genes & Genetic Systems

      Volume: 90 Issue: 1 Pages: 1-9

    • DOI

      10.1266/ggs.90.1

    • NAID

      130005083380

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 栽培イネと野生イネの戻し交雑系統群を用いたイネの花器官を支配する遺伝子座の同定2017

    • Author(s)
      石川 亮 ; 渡部 貴史 ; 西岡 諒 ; Pham Thien Thanh ; 石井 尊生
    • Organizer
      日本育種学会第131回講演会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2017-03-29
    • Related Report
      2016 Annual Research Report
  • [Presentation] 野生イネ(Oryza rufipogon)の遺伝的背景で芒を短くするためにはイネの栽培化における無芒性の検証にむけて2017

    • Author(s)
      池本 麻衣 ; 大塚 光晴 ; 石川 亮 ; 石井 尊生
    • Organizer
      日本育種学会第131回講演会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2017-03-29
    • Related Report
      2016 Annual Research Report
  • [Presentation] 野生イネOryza rufipogon由来の穂の開帳性に関する遺伝子座と関連遺伝子の発現について2016

    • Author(s)
      西岡 諒,三日月 裕美,田中 裕,沼口 孝司,石川 亮,石井 尊生
    • Organizer
      日本育種学会第130回講演会
    • Place of Presentation
      鳥取大学
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] A closed panicle played an important role in rice domestication2016

    • Author(s)
      Nishioka R, Numaguchi K, Thanh PT, Ishikawa R, Ishii T
    • Organizer
      8th World Archaeology Congress
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2016-09-01
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Evaluation of seed-shattering behaviour in early rice domestication2016

    • Author(s)
      Ishikawa R, Oka Y, Tsujimura Y, Takama N,Inoue C, Htun TM, Ishii T
    • Organizer
      8th World Archaeology Congress
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2016-09-01
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 熱帯アジアの野生イネOryza rufipogon2016

    • Author(s)
      石井 尊生
    • Organizer
      イネ属近縁野生種研究会
    • Place of Presentation
      遺伝学研究所
    • Year and Date
      2016-07-22
    • Related Report
      2016 Annual Research Report
  • [Presentation] 野生イネOryza rufipogon由来の穂の開帳性を支配する遺伝子座の推定と効果の検証2016

    • Author(s)
      西岡 諒,三日月 裕美,田中 裕,沼口 孝司,石川 亮,石井 尊生
    • Organizer
      イネ遺伝学・分子生物学ワークショップ
    • Place of Presentation
      名古屋大学
    • Year and Date
      2016-07-05
    • Related Report
      2016 Annual Research Report
  • [Presentation] 栽培イネの祖先となった野生イネとは?2016

    • Author(s)
      石井 尊生
    • Organizer
      第6回北海道イネ研究会
    • Place of Presentation
      北海道大学
    • Year and Date
      2016-06-24
    • Related Report
      2016 Annual Research Report
  • [Presentation] Allelic interaction at awing loci in the genetic backgrounds of wild and cultivated rice2016

    • Author(s)
      Ikemoto M, Otsuka M, Thanh PT, Ishikawa R, Ishii T
    • Organizer
      PAG Asia 2016
    • Place of Presentation
      Singapore
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Identification of quantitative trait loci controlling seed-shattering behaviour in rice2016

    • Author(s)
      Tsujimura Y, Htun TM, Inoue C, Ishii T, Ishikawa R
    • Organizer
      PAG Asia 2016
    • Place of Presentation
      Singapore
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 野生イネOryza rufipogonと栽培イネO. sativaの戻し交雑集団を用いた穂の開帳性に関するQTL解析2016

    • Author(s)
      西岡 諒、三日月 裕美、田中 裕、沼口 孝司、石川 亮、石井 尊生
    • Organizer
      日本育種学会 第129回講演会
    • Place of Presentation
      横浜市立大学(神奈川県・横浜市)
    • Year and Date
      2016-03-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] 野生イネおよび栽培イネの遺伝的背景における芒の長さを支配する遺伝子座の対立遺伝子間の相互作用2016

    • Author(s)
      池本 麻衣、大塚 光晴、石川 亮、石井 尊生
    • Organizer
      日本育種学会 第129回講演会
    • Place of Presentation
      横浜市立大学(神奈川県・横浜市)
    • Year and Date
      2016-03-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] インディカ型栽培イネKasalathの脱粒性喪失に関与した新規遺伝子座の探索2016

    • Author(s)
      岡 佑美、井上 千鶴、Than Myint Htun、竹中 祥尭、辻村 雄紀、石井 尊生、石川 亮
    • Organizer
      日本育種学会 第129回講演会
    • Place of Presentation
      横浜市立大学(神奈川県・横浜市)
    • Year and Date
      2016-03-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] 野生イネ(Oryza rufipogon) の遺伝的背景における種子脱粒性と穂の開帳性の関係2015

    • Author(s)
      井上 千鶴、Than Myint Htun、石井 尊生、石川 亮
    • Organizer
      日本育種学会 第128回講演会
    • Place of Presentation
      新潟大学(新潟県・新潟市)
    • Year and Date
      2015-09-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] 野生イネOryza rufipogon由来の穂の開帳性を支配する遺伝子座の推定2015

    • Author(s)
      西岡 諒、三日月 裕美、Than Myint Htun、石川 亮 、石井 尊生
    • Organizer
      近畿作物・育種研究会 第179回例会
    • Place of Presentation
      橿原考古学研究所(奈良県・橿原市)
    • Year and Date
      2015-05-30
    • Related Report
      2015 Annual Research Report
  • [Presentation] 野生イネOryza rufipogonと栽培イネO. sativaの戻し交雑自殖系統を用いた節からの出芽・出根能力およびひこばえの発生能力の評価2015

    • Author(s)
      池本麻衣、大八木徹弥、Pham Thien Thanh、石川 亮、石井尊生
    • Organizer
      近畿作物・育種研究会 第179回例会
    • Place of Presentation
      橿原考古学研究所(奈良県・橿原市)
    • Year and Date
      2015-05-30
    • Related Report
      2015 Annual Research Report
  • [Presentation] A closed panicle regulated by OsLG1 was a selected trait during rice domestication2015

    • Author(s)
      Takashige Ishii
    • Organizer
      Plant & Animal Genome XXIII
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2015-01-13
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] Rice Genomics, Genetics and Breeding (Domestication loci controlling panicle shape, seed shattering and seed awning)2018

    • Author(s)
      Ishii T, Ishikawa R
    • Total Pages
      558
    • Publisher
      Springer Nature
    • ISBN
      9789811074608
    • Related Report
      2017 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2019-03-29  

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