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Structural analysis and functional modification of unusual amino acid-forming enzyme, and the application to peptide engineering

Research Project

Project/Area Number 26292040
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Applied microbiology
Research InstitutionKyushu University

Principal Investigator

SONOMOTO Kenji  九州大学, 農学研究院, 教授 (10154717)

Co-Investigator(Kenkyū-buntansha) 神田 大輔  九州大学, 生体防御医学研究所, 教授 (80186618)
善藤 威史  九州大学, (連合)農学研究科(研究院), 助教 (50380556)
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2015: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2014: ¥9,750,000 (Direct Cost: ¥7,500,000、Indirect Cost: ¥2,250,000)
Keywordsランチビオティック / 異常アミノ酸 / Nukacin ISK-1 / 翻訳後修飾 / 標的分子 / 細胞壁前駆体lipid II / 核磁気共鳴(NMR)解析 / X線結晶構造解析 / nukacin ISK-1 / 修飾酵素の機能改変解析 / リーダーペプチド / プロタミン / アミノ酸の脱水・環化 / ペプチドデザイン / lipidⅡ / NMR解析 / 2成分制御システムLiaRS / 相互作用領域 / 抗菌ペプチド / 異常アミノ酸形成酵素NukM / ペプチドの機能改変 / 脱水・環化 / 作用機作 / 細胞壁前駆体リピドII / リピドII複合体 / 安定同位体標識
Outline of Final Research Achievements

The structure of nukacin ISK-1 was found to have two states chemically exchanged by solution NMR. The exchange rate kex was about 1.5 s-1. The high abundance ratio had high affinity to the cell wall peptidoglycan precursor lipid II. The NMR-based model of nukacine ISK-1 in a complex with lipid II indicated that the hydrophobic amino acid side chain in the Ring C region of nukacin ISK-1 participates in binding to the lipid II fat chain region, and the region near Ring A participates in binding with the phosphate group of lipid II. By attaching the leader peptide of the precursor peptide of nukacin ISK-1, the unusual amino acid-forming enzyme NukM also recognized other peptides as a substrate.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (21 results)

All 2018 2017 2016 2015 2014 Other

All Journal Article (6 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 6 results,  Acknowledgement Compliant: 3 results,  Open Access: 1 results) Presentation (13 results) (of which Int'l Joint Research: 5 results,  Invited: 8 results) Remarks (2 results)

  • [Journal Article] ATPase activity regulation by leader peptide processing of ABC transporter maturation and secretion protein, NukT, for lantibiotic nukacin ISK-12018

    • Author(s)
      Sen Zheng, Jun-ichi Nagao, Mami Nishie, Takeshi Zendo and Kenji Sonomoto
    • Journal Title

      Applied. Microbiology and Biotechnology

      Volume: 102 Issue: 2 Pages: 763-772

    • DOI

      10.1007/s00253-017-8645-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Diversified transporters and pathways for bacteriocin secretion in gram-positive bacteria2018

    • Author(s)
      Sen Zheng and Kenji Sonomoto
    • Journal Title

      Applied. Microbiology and Biotechnology

      Volume: - Issue: 10 Pages: 4243-4253

    • DOI

      10.1007/s00253-018-8917-5

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] LiaRS reporter assay: A simple tool to identify lipid II binding moieties in lantibiotic nukacin ISK-12017

    • Author(s)
      Khaled M. Elsayed, Mohammad R. Islam, Abdullah-Al-Mahin, Jun-ichi Nagao, Takeshi Zendo and Kenji Sonomoto
    • Journal Title

      Journal of. Bioscience and. Bioengineering

      Volume: 123 Issue: 3 Pages: 398-401

    • DOI

      10.1016/j.jbiosc.2016.10.002

    • NAID

      40021152950

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] In vitro catalytic activity of N-terminal and C-terminal domains in NukM, the post-translational modification enzyme of nukacin ISK-12015

    • Author(s)
      Chinatsu Shimafuji, Megumi Noguchi, Mami Nishie, Jun-ichi Nagao, Kouki Shioya, Takeshi Zendo, Jiro Nakayama and Kenji Sonomoto
    • Journal Title

      Journal of. Bioscience and. Bioengineering

      Volume: 120(6) Issue: 6 Pages: 624-629

    • DOI

      10.1016/j.jbiosc.2015.03.020

    • NAID

      110010022643

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Bactericidal activity of nukacin ISK-1 : an alternative mode of action2014

    • Author(s)
      Urmi Roy, Mohammad Riazul Islam, Jun-ichi Nagao, Hiroshi lida, Abdullah-Al-Mahin, Mengqi Li, Takeshi Zendo, Jiro Nakayama, and Kenji Sonomoto
    • Journal Title

      Bioscience Biotechnology and Biochemistry

      Volume: (印刷中) Issue: 7 Pages: 1270-1273

    • DOI

      10.1080/09168451.2014.918485

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel bacteriocins from lactic acid bacteria (LAB): various structures and applications2014

    • Author(s)
      Perez RH, Zendo T, Sonomoto K
    • Journal Title

      Microb Cell Fact

      Volume: 13 Issue: S1

    • DOI

      10.1186/1475-2859-13-s1-s3

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Interdomain cooperation of dual functional ABC transporter NukT for synthesis of lantibiotic, nukacin ISK-12017

    • Author(s)
      Kenji Sonomoto
    • Organizer
      ANTIMIC2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Interdomain cooperation of dual functional ABC transporter (ABC transporter maturation and secretion (AMS) protein) for lantibiotic production2017

    • Author(s)
      Kenji Sonomoto, Sen Zheng, Jun-ichi Nagao, Mami Nishie, Takeshi Zendo
    • Organizer
      The 19th Japanese-German Workshop on Enzyme Technology 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 異常アミノ酸導入酵素NukMを用いた新規ペプチドデザイン技術の構築2017

    • Author(s)
      長田弥生,野口萌、永尾潤一、善藤威史、園元謙二
    • Organizer
      第24回日本生物工学会九州支部大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ランチビオティックnukacin ISK-1の生合成に関与するトランスポーターの構造と機能解析2016

    • Author(s)
      松永愛美、鄭 森、高城博也、石橋直樹、永尾潤一、善藤威史、園元謙二
    • Organizer
      第23回日本生物工学会九州支部大会
    • Place of Presentation
      九州工業大学情報工学部(福岡県、飯塚市)
    • Year and Date
      2016-12-03
    • Related Report
      2016 Annual Research Report
  • [Presentation] Diversity and Application of Bacteriocins of Lactic Acid Bacteria2016

    • Author(s)
      Kenji Sonomoto
    • Organizer
      5th Asian Federation of Societies for Lactic Acid Bacteria International Symposium (AFSLAB Sym 2016)
    • Place of Presentation
      Taipei(台湾)
    • Year and Date
      2016-11-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mutual regulation between two distant regions of a bifunctional ABC transporter for lantibiotic nukacin ISK-1 exportation2015

    • Author(s)
      鄭 森, 永尾潤一, 西江麻美, 善藤威史, 園元謙二
    • Organizer
      第67回日本生物工学会大会(2015)
    • Place of Presentation
      城山観光ホテル(鹿児島市)
    • Year and Date
      2015-10-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] Novel bacteriocins from lactic acid bacteria: various structures and applications2015

    • Author(s)
      Kenji Sonomoto
    • Organizer
      56th international symposium of the Korean Society of Life Science
    • Place of Presentation
      Changwon(大韓民国)
    • Year and Date
      2015-08-28
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Bacteriocins from lactic acid bacteria: characterization and potential applications2015

    • Author(s)
      Takeshi Zendo and Kenji Sonomoto
    • Organizer
      The Food Microbiology Division Symposium of KoSFoST International symposium
    • Place of Presentation
      Busan(大韓民国)
    • Year and Date
      2015-06-04
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Novel bacteriocins from lactic acid bacteria: various structures and applications2015

    • Author(s)
      Kenji Sonomoto
    • Organizer
      Workshop on bacteriocins from lactic acid bacteria: exploring alternatives for food safety
    • Place of Presentation
      Bangkok(タイ王国)
    • Year and Date
      2015-03-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Insights into the molecular mode of action of nukacin ISK-12014

    • Author(s)
      Abdullah-Al-Mahin, Urmi Roy, Daisuke Fujinami, Mohammad Riazul Islam, Sabrina Momin, Jun-ichi Nagao, Hiroshi Iida, Takeshi Zendo, Jiro Nakayama, Daisuke Kohda and Kenji Sonomoto
    • Organizer
      第66回日本生物工学会大会(2014)
    • Place of Presentation
      札幌国際会議場(札幌)
    • Year and Date
      2014-09-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Novel bacteriocins from lactic acid bacteria: various structures and applications2014

    • Author(s)
      Kenji Sonomoto
    • Organizer
      11th International Symposium on Lactic Acid Bacteria
    • Place of Presentation
      Egmond aan Zee(オランダ)
    • Year and Date
      2014-09-03
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Characterization of biosynthetic enzymes and antibacterial action of lantibiotic nukacin ISK-12014

    • Author(s)
      Kenji Sonomoto, Mami Nishie, Sen Zheng, Jun-ichi Nagao and Takeshi Zendo
    • Organizer
      4th International Symposium on Antimicrobial Peptides
    • Place of Presentation
      Lorient(フランス共和国)
    • Year and Date
      2014-06-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Unraveling the blueprint of the molecular mode of action of nukacin ISK-1, a type-A(II) lantibiotic2014

    • Author(s)
      Abdullah-Al-Mahin, Urmi Roy, Daisuke Fujinami, Mohammad Riazul Islam, Sabrina Momin, Jun-ichi Nagao, Hiroshi Iida, Takeshi Zendo, Jiro Nakayama, Daisuke Kohda and Kenji Sonomoto
    • Organizer
      4th International Symposium on Antimicrobial Peptides
    • Place of Presentation
      Lorient(フランス共和国)
    • Year and Date
      2014-06-04 – 2014-06-06
    • Related Report
      2014 Annual Research Report
  • [Remarks] 九州大学大学院農学研究院生命機能科学部門システム生物工学講座微生物工学分野ホームページ

    • URL

      http://www.agr.kyushu-u.ac.jp/lab/microbt/

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
  • [Remarks] 九州大学大学院農学研究院生命機能科学部門システム生物工学講座微生物工学分野

    • URL

      http://www.agr.kyushu-u.ac.jp/lab/microbt/

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2019-03-29  

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