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Molecular mechanism underlying synchronization of circadian clock in higher plants to external environmental stimuli

Research Project

Project/Area Number 26292051
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Applied biochemistry
Research InstitutionNagoya University

Principal Investigator

Yamashino Takafumi  名古屋大学, 生命農学研究科, 准教授 (00314005)

Research Collaborator AOKI Setsuyuki  
MITSUDA Nobutaka  
TAKAGI Masaru  
MIZUNO Takeshi  
NOMOTO Yuji  
OKA Haruka  
KITAYAMA Miki  
TAKATA Yusuke  
KATO Shoko  
IMAMURA Miyu  
FURUKAWA Yoshiki  
KOBAYASHI Masahide  
Project Period (FY) 2014-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2017: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2014: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Keywords概日時計 / 光情報伝達 / 温度入力 / 転写制御 / 温度 / 概日リズム / 同調性 / 光周性 / 温度応答 / 植物時計 / 生物時計 / 遺伝子発現 / シロイヌナズナ / 光入力 / 遺伝子発現制御 / 環境応答 / 光
Outline of Final Research Achievements

Circadian clocks are intrinsic and entrainable mechanisms that generate biological rhythms with approximately 24-hours period. Resetting of circadian clocks play an essential role in order to synchronize phases of the biological rhythm with changes in diurnal day and night cycles. Light and changes in ambient temperature are two fundamental resetting cues. Focused on time-of-day-specific temperature effect on clock gene responses, it was found that PRR9, PRR7 & LNK1 are up-regulated in response to changes in temperatures specifically at late night phase. On the contrary, TOC1 is up-regulated response to changes in temperatures specifically at early night phase. These results suggest that the temperature-response is gated by circadian clock. Chromatin immunoprecipitation assays showed that PRR9, PRR7, LNK1 and LUX are direct targets of the nighttime repressor, suggesting that temperature signals feed into the clock transcriptional circuitry through the EC nighttime repressor.

Academic Significance and Societal Importance of the Research Achievements

概日リズムの位相制御は一日周期で規則的に変動する外部環境を予測し、種々の生理機能について一日における特定の時間に最高のパフォーマンスを発揮できるよう生体の内生リズムを調節する上で非常に重要であると考えられる。本研究では暗期の入力信号に感受性を示す植物時計の性質を分子レベルで解析し、暗期の入力信号に感受性を示す転写抑制因子の機能を明らかにすることができた。この知見は概日時計が深く関与している植物の光周性花成や形態形成を含む成長様式全般を人工制御するための知識基盤となりうるだろう。

Report

(6 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (41 results)

All 2019 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (6 results) Journal Article (9 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 9 results,  Open Access: 1 results,  Acknowledgement Compliant: 4 results) Presentation (24 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] CSIRO(オーストラリア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Queensland Bioscience Precinct, CSIRO(Australia)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Aalborg University/Technical University of Denmark(Denmark)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] University of Perugia(Italy)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Karlsruhe Institute of Technology(Germany)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] オーストラリア連邦科学産業研究機構(CSIRO)(オーストラリア)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] The cereal pathogen Fusarium pseudograminearum produces a new class of active cytokinins during infection.2018

    • Author(s)
      Sorensen JL, Benfield AH, Wollenberg RD, Westphal K, Wimmer R, Nielsen MR, Nielsen KF, Carere J, Covarelli L, Beccari G, Powell J, Yamashino T, Kogler H, Sondergaard TE, Gardiner DM.
    • Journal Title

      Mol Plant Pathol.

      Volume: 19 Issue: 5 Pages: 1140-1154

    • DOI

      10.1111/mpp.12593

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Light-regulated PAS-containing histidine kinases delay gametophore formation in the moss Physcomitrella patens2018

    • Author(s)
      Ryo, M., Yamashino, T., Nomoto, Y., Goto, Y., Ichinose, M., Sato, K., Sugita, M. and Aoki, S.
    • Journal Title

      J. Exp. Bot.

      Volume: 69 Issue: 20 Pages: 4839-4851

    • DOI

      10.1093/jxb/ery257

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] PAS-histidine kinases PHK1 and PHK2 exert oxygen-dependent dual and opposite effects on gametophore formation in the moss Physcomitrella patens.2018

    • Author(s)
      Masashi Ryo, Takafumi Yamashino,Hisanori Yamakawa, Yuichi Fujita and Setsuyuki Aoki.
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 503 Issue: 4 Pages: 2861-2865

    • DOI

      10.1016/j.bbrc.2018.08.056

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Diversity of plant circadian clocks: insights from studies of Chlamydomonas reinhardtii and Physcomitrella patens.2016

    • Author(s)
      2.Ryo, T., Matsuo, T., Yamashino, T., Ichinose, M., Sugita, M. and Aoki, S.
    • Journal Title

      Plant Signaling & Behavior

      Volume: 11 Issue: 1 Pages: e1116661-e1116661

    • DOI

      10.1080/15592324.2015.1116661

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Insight into a Physiological Role for the EC Night-Time Repressor in the Arabidopsis Circadian Clock.2015

    • Author(s)
      Mizuno T, Kitayama M, Takayama C, Yamashino T
    • Journal Title

      Plant Cell Physiol.

      Volume: 56 Issue: 9 Pages: 1738-1747

    • DOI

      10.1093/pcp/pcv094

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Insight into the mechanism of end-of-day far-red light (EODFR)-induced shade avoidance responses in Arabidopsis thaliana.2015

    • Author(s)
      Mizuno T, Oka H, Yoshimura F, Ishida K, Yamashino T
    • Journal Title

      Biosci Biotechnol Biochem.

      Volume: 79 Issue: 12 Pages: 1987-1994

    • DOI

      10.1080/09168451.2015.1065171

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The plant circadian clock looks like a traditional Japanese clock rather than a modern Western clock.2015

    • Author(s)
      Mizuno T, Yamashino T
    • Journal Title

      Plant Signal Behav.

      Volume: 10 Issue: 12 Pages: e1087630-e1087630

    • DOI

      10.1080/15592324.2015.1087630

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Ambient Temperature Signal Feeds into the Circadian Clock Transcriptional Circuitry Through the EC Night-Time Repressor in Arabidopsis thaliana.2014

    • Author(s)
      Mizuno T, Nomoto Y, Oka H, Kitayama M, Takeuchi A, Tsubouchi M, Yamashino T
    • Journal Title

      Plant Cell Physiol

      Volume: 55 Issue: 5 Pages: 958-976

    • DOI

      10.1093/pcp/pcu030

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The EC night-time repressor plays a crucial role in modulating circadian clock transcriptional circuitry by conservatively double-checking both warm-night and night-time-light signals in a synergistic manner in Arabidopsis thaliana.2014

    • Author(s)
      Mizuno T, Kitayama M, Oka H, Tsubouchi M, Takayama C, Nomoto Y, Yamashino T.
    • Journal Title

      Plant Cell Physiol.

      Volume: 55 Issue: 12 Pages: 2139-2151

    • DOI

      10.1093/pcp/pcu144

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 植物時計を構成する中心 振動体 PRR family のレシー バー様ドメインの機能解明2019

    • Author(s)
      高田祐輔,小林将英,古川 博規,山篠貴史
    • Organizer
      第60回日本植物生理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] サイトカイニン情報伝達によ る肥厚成長に関与する LBD/ ASL ファミリー転写因子の機 能解析2019

    • Author(s)
      今村美友, 島田由里菜, 伊藤正樹, 光田展隆, 近藤侑貴, 高木優, 山篠貴史
    • Organizer
      第60回日本植物生理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ヒメツリガネゴケにおける PAS ヒスチジンキナーゼを含む二成分制御系の同定2019

    • Author(s)
      中井皐太, 佐藤健介, 龍昌志, 山篠貴史, 野本友司, 後藤雄規, 一瀬瑞穂, 杉田護, 青木摂之
    • Organizer
      第60回日本植物生理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 高等植物シロイヌナズナの二次肥厚を活性化するサイト カイニン情報伝達経路の解明2019

    • Author(s)
      島田由里菜, 今村美友, 權部晃一, 山篠貴史
    • Organizer
      2019年度日本農芸化学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] シロイヌナズナ軸性器官でのサイトカイニンによる細胞分裂活性の制御に関与する転写因子の分子機能2018

    • Author(s)
      今村 美友、島田 由里菜、古川 博規、馬場 真里、山篠 貴史
    • Organizer
      日本農芸化学会中部支部第183回例会
    • Related Report
      2018 Annual Research Report
  • [Presentation] コケ植物のPASヒスチジンキナーゼの機能解析2018

    • Author(s)
      佐藤健介, 山篠貴史, 龍昌志, 山川壽伯, 藤田祐一, 青木摂之
    • Organizer
      日本農芸化学会中部支部第183回例会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 植物時計の中心振動体 PRR に保存されたレシーバー様ドメインの機能解析2018

    • Author(s)
      高田祐輔,古川博規,今村美友, 嶺野雄登, 野本友司, 山篠貴史
    • Organizer
      日本農芸化学会中部支部第183回例会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 植物時計の中心振動体機能を支えるPRR familyのレシーバー様ドメインの機能解明2018

    • Author(s)
      高田祐輔,古川博規,今村美友,野本友司,山篠貴史
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Regulatory Mechanism of Radial Growth at Root Axis via Cytokinin Signaling in Arabidopsis thaliana2018

    • Author(s)
      Miyu Imamura, Yurina Shimada, Masaki Ito, Nobutaka Mitsuda, Yuki Kondo, Masaru Ohme-Takagi, Takafumi Yamashino
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 植物時計の振動特性を支えるエピジェネティック制御機構の解析2018

    • Author(s)
      高田祐輔,古川博規,嶺野雄登,今村美友,山篠貴史
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 高等植物の二次成長を支える側方分裂組織の活性維持機構の解明2018

    • Author(s)
      島田由里菜、今村美友、古川博規、山篠貴史
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] シロイヌナズナにおけるサイトカイニンシグナリングによる二次成長制御機構の解析2017

    • Author(s)
      今村美友、島田由里菜、光田展隆、高木優、山篠貴史
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2017-03-17
    • Related Report
      2016 Annual Research Report
  • [Presentation] The Important Role of The Expression Period of PRR7 in The Phase Setting of Circadian Rhythms of Arabidopsis thaliana2017

    • Author(s)
      Yusuke Takata, Yuto Mineno, Yuji Nomoto, Shiori Sasada, Takafumi Yamashino
    • Organizer
      第58回日本植物生理学会
    • Place of Presentation
      鹿児島大学
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] PAS-containing Histidine Kinases and the Circadian Clock in the Moss Physcomitrella patens2017

    • Author(s)
      Masashi Ryo, Yuji Nomoto, Takafumi Yamashino, Takuya Matsuo, Yuki Goto, Kensuke Sato, Mizuho Ichinose, Mamoru Sugita, Setsuyuki Aoki
    • Organizer
      第58回日本植物生理学会
    • Place of Presentation
      鹿児島大学
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] シロイヌナズナにおける概日時計中心振動体を構成する疑似レスポンスレギュレーターPRR7のレシーバー様ドメインの機能解析2017

    • Author(s)
      高田祐輔,嶺野雄登,今村美友,山篠貴史
    • Organizer
      第81回日本生化学会中部支部例会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 高等植物シロイヌナズナにおける概日時計因子PRR7のレシーバー様ドメインの機能解析2017

    • Author(s)
      高田祐輔,嶺野雄登,加藤翔子, 今村美友,野本友司, 山篠貴史
    • Organizer
      日本農芸化学会中部支部第180回例会
    • Related Report
      2017 Annual Research Report
  • [Presentation] サイトカイニン情報伝達によるシロイヌナズナ軸性器官における細胞分裂活性の制御機構2017

    • Author(s)
      今村 美友、島田 由里菜、古川 博規、山篠 貴史
    • Organizer
      日本農芸化学会中部支部第180回例会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Role of cytokinin signaling in proliferation of vascular cambium in A. thaliana2016

    • Author(s)
      今村美友, 島田由里菜, 光田展隆,高木優 ,竹林裕美子 ,榊原均, 山篠貴史
    • Organizer
      第57回日本植物生理学会年会
    • Place of Presentation
      岩手大学
    • Year and Date
      2016-03-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] Involvement of circadian clock in the control of growth and development in A. thaliana2015

    • Author(s)
      Takafumi Yamashino
    • Organizer
      2015 International symposium on Agricultural Biotechnology
    • Place of Presentation
      Dong-A University
    • Year and Date
      2015-11-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Role of cytokinin signaling in proliferation of vascular cambium in A. thaliana2015

    • Author(s)
      Miyu Imamura, Nobutaka Mitsuda, Masaru Ohme-Takagi and Takafumi Yamashino
    • Organizer
      International ERATO Higashiyama Live-Holonics Symposium 2015
    • Place of Presentation
      名古屋大学
    • Year and Date
      2015-08-28
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The EC nighttime repressor plays a crucial role in modulating circadian clock transcriptional circuitry by conservatively double-checking both warm-night and nighttime-light cues in Arabidopsis thaliana2015

    • Author(s)
      北山 美樹,高山 知恵子,坪内 真由佳,岡 晴香,野本 友司,山篠 貴史,水野 猛
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京
    • Year and Date
      2015-03-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] Identification and characterization of a set of novel circadian clock-associated genes through a new approach in Arabidopsis thaliana2015

    • Author(s)
      坪内 真由佳,北山 美樹,岡 晴香,野本 友司,山篠 貴史,水野 猛
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京
    • Year and Date
      2015-03-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] Molecular mechanisms underlying the clock-controlled and PIF4-mediated diurnal and photoperiodic seedling growth including the elongation of hypocotyls in Arabidopsis thaliana2015

    • Author(s)
      岡 晴香,吉村 芙美,坪内 真由佳,北山 美樹,野本 友司,山篠 貴史,水野 猛
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京
    • Year and Date
      2015-03-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] Molecular basis on resetting of circadian clock system in higher plants2014

    • Author(s)
      山篠貴史
    • Organizer
      第38回内藤コンファレンス「生物システムの物質的基盤」
    • Place of Presentation
      札幌
    • Year and Date
      2014-10-07
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Book] 植物の概日時計と和時計「植物に内在する時計のしくみ」2017

    • Author(s)
      水野猛、山篠貴史
    • Total Pages
      8
    • Publisher
      化学と生物
    • Related Report
      2016 Annual Research Report
  • [Remarks] 名古屋大学大学院生命農学研究科ゲノム情報機能学

    • URL

      https://www.agr.nagoya-u.ac.jp/~microbio/

    • Related Report
      2016 Annual Research Report

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Published: 2014-04-04   Modified: 2020-03-30  

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