• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Molecular phylogenetic study on domestic process and global gene migration of chicken and pigs

Research Project

Project/Area Number 26292139
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Animal production science
Research InstitutionHiroshima University

Principal Investigator

NISHIBORI Masahide  広島大学, 生物圏科学研究科, 准教授 (80237718)

Co-Investigator(Kenkyū-buntansha) 山本 義雄  広島大学, 生物圏科学研究科, 名誉教授 (10032103)
万年 英之  神戸大学, (連合)農学研究科(研究院), 教授 (20263395)
下桐 猛  鹿児島大学, 農学部, 准教授 (40315403)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥16,250,000 (Direct Cost: ¥12,500,000、Indirect Cost: ¥3,750,000)
Fiscal Year 2016: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2014: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywordsゲノム / ニワトリ / ヤケイ / イノシシ / ブタ / ドメスティケーション / 分子系統 / 遺伝子流動 / ゲノム情報 / 遺伝的多様性 / ミトコンドリア / SNP / 畜産学 / 遺伝学 / 動物 / 進化 / 一塩基多型(SNP) / 分子系統樹 / 一塩基多型(SNP) / 家畜化・家禽化
Outline of Final Research Achievements

Molecular phylogenetic study on domestic process and global gene migration of chickens and pigs were carried out using mitochondrial DNA and single nucleotide polymorphisms as molecular markers. In phylogenetic tree of wild boars and pigs using SNPs, (1) separated clades were formed for each breed, subspecies or population, (2) Japanese wild boar (JWB) and Ryukyu one (RWB) separated into two clades obviously, and especially RWB had formed five clades in each island. In molecular analysis of chickens using mitochondrial DNA, it suggested the dual origins of African native chickens. The first group was probably originated from South Asia, and then migrated to West Asia, and finally arrived to Africa thorough Egypt. The second group migrated from Pacific to East Africa via Indian Ocean probably by Austronesian people.
Therefore, these obtained findings are important for the better understanding of the diversity and uniqueness of chickens (junglefowls) and pigs (wild boars).

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (44 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (4 results) Journal Article (5 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Acknowledgement Compliant: 3 results) Presentation (34 results) (of which Int'l Joint Research: 10 results) Remarks (1 results)

  • [Int'l Joint Research] Khon Kaen University(タイ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Visayas State University(Philippines)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] 復旦大学生命科学院(中国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Khon Kaen University/Burapha University(タイ)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Origin and genetic diversity of Egyptian native chickens based on complete sequence of mitochondrial DNA D-loop region2016

    • Author(s)
      Sayed AM. Osman, Takahiro Yonezawa, and Masahide Nishibori
    • Journal Title

      Poultry Science

      Volume: 95 Issue: 6 Pages: 1248-1256

    • DOI

      10.3382/ps/pew029

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] 生活圏に生息する動物種を対象とした分子種判別法の利活用に関する研究2016

    • Author(s)
      伊藤文香, 大西諒貴, 安江博, 西堀正英
    • Journal Title

      DNA多型

      Volume: 24 Pages: 87-89

    • Related Report
      2016 Annual Research Report
    • Acknowledgement Compliant
  • [Journal Article] Origin and genetic diversity of Egyptian native chickens based on complete sequence of mitochondrial DNA D-loop region2016

    • Author(s)
      Sayed Osman, Takahiro Yonezawa, and Masahide Nishibori
    • Journal Title

      Poultry Science

      Volume: 95

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] SNPs情報によるイノシシ・ブタの分子系統解析2014

    • Author(s)
      濵田秀一・黒澤弥悦・高田勝・庭田悟・下桐猛・大西諒貴・安江博・ 西堀正英
    • Journal Title

      DNA多型

      Volume: 22 Pages: 31-34

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] グローバル化に対応するための人工授精技術の活用2014

    • Author(s)
      島田昌之・西堀正英・岡崎哲司.
    • Journal Title

      月刊養豚情報

      Volume: 42 Pages: 12-14

    • Related Report
      2014 Annual Research Report
  • [Presentation] Factors Influence Avian Sex Determination and Differentiation2017

    • Author(s)
      Mahiru Haneda, Kanna Fukuda, Sorana KobayashiI, Shinta Tsuboi, Maho Ito, Hirotaka Nakano, Hiroyuki Horiuchi, and Masahide Nishibori
    • Organizer
      PAG in Asia 2017
    • Place of Presentation
      Seoul, KOREA
    • Year and Date
      2017-05-29
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular Phylogenetic Analysis and Morphological Features of Ryukyu Wild Boar in Japan2017

    • Author(s)
      Maho Ito, Keiko Takeuchi, Syuichi Hamada, Tomomi Aratani, Masaru Takada, Satoru Niwata, Takeshi Shimogiri, Hiroshi Yasue, Kirei Yasuda, Yaetsu Kurosawa, Masahide Nishibori
    • Organizer
      PAG in Asia 2017
    • Place of Presentation
      Seoul, KOREA
    • Year and Date
      2017-05-29
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] カザフスタン在来家畜とその近縁野生種の遺伝資源学的国際協同調査研究2017

    • Author(s)
      西堀 正英・伊藤 文香・竹内 佳子・大西 諒貴・山本 義雄・黒澤 弥悦・木村 李花 子・高橋 幸水・野村 こう・角田 健司・山縣 高宏・国枝 哲夫・万年 英之・M.Zh. Suleimenov・A. Meldelokov・A. Kazhmrat・S.B. Bibigul・M. Bakhtin・P. Kazymbet
    • Organizer
      第122回日本畜産学会大会
    • Place of Presentation
      神戸大学,神戸市
    • Year and Date
      2017-03-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] Detection and screening of the APAF1 gene mutation in aborted and mummified fetuses in Japanese dairy herds2017

    • Author(s)
      Ghanem Mohamed Elshabrawy and Nishibori Masahide
    • Organizer
      第122回日本畜産学会大会
    • Place of Presentation
      神戸大学,神戸市
    • Year and Date
      2017-03-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] 日本におけるイノシシ(Sus scrofa)の遺伝的集団構造および分子系統解析2017

    • Author(s)
      伊藤 真穂・竹内 佳子・濱田 秀一・荒谷 友美・安田 喜禮・庭田 悟・下桐 猛・安江 博・黒澤 弥悦・西堀 正英
    • Organizer
      第122回日本畜産学会大会
    • Place of Presentation
      神戸大学,神戸市
    • Year and Date
      2017-03-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] イノシシにおける RYR1 遺伝子変異 SNP と麻酔感受性について2017

    • Author(s)
      荒谷 友美・竹内 佳子・伊藤 真穂・黒澤 弥悦・庭田 悟・安江 博・奥田 ゆう・国枝 哲夫・西堀 正英
    • Organizer
      第122回日本畜産学会大会
    • Place of Presentation
      神戸大学,神戸市
    • Year and Date
      2017-03-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] PAS による、より簡便な分子種判別技術2017

    • Author(s)
      伊藤 文香・大西 諒貴・山下 裕樹・安江 博・西堀 正英
    • Organizer
      第122回日本畜産学会大会
    • Place of Presentation
      神戸大学,神戸市
    • Year and Date
      2017-03-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] アフリカ大陸の在来鶏におけるミトコンドリア DNA を用いた遺伝子流動の推定2017

    • Author(s)
      本間 香帆・黒澤 祐・Sayed Osman・山本 義雄・米澤 隆弘・西堀 正英
    • Organizer
      第122回日本畜産学会大会
    • Place of Presentation
      神戸大学,神戸市
    • Year and Date
      2017-03-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] イノシシにおけるRYR1遺伝子変異SNPと麻酔感受性について2017

    • Author(s)
      荒谷友美, 竹内佳子, 伊藤真穂, 黒澤弥悦, 庭田悟, 安江博, 奥田ゆう, 国枝哲夫, 西堀正英
    • Organizer
      第122回日本畜産学会大会
    • Place of Presentation
      神戸大学,神戸市
    • Year and Date
      2017-03-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] DNA polymorphism on a tool for molecular discrimination in animal species. International2017

    • Author(s)
      Fumika Ito, Ryoki Onishi, Hiroki Yamashita, Hiroshi Yasue, Masahide Nishibori
    • Organizer
      Plant & Animal Genome XXV
    • Place of Presentation
      San Diego, CA, USA
    • Year and Date
      2017-01-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] セキショクヤケイにおける家禽化の行動観察および分子遺伝学的解析2017

    • Author(s)
      黒澤祐人, 山本義雄, Sayed A.-M. Osman, Khwanruan Srinui, Monchai Duangjinda, 西堀正英
    • Organizer
      日本家禽学会2017年度春季大会
    • Place of Presentation
      神戸大学,神戸市
    • Related Report
      2016 Annual Research Report
  • [Presentation] DNA簡易検出法(改良PAS法)を用いた分子種判別方法の効率的な利活用2016

    • Author(s)
      伊藤文香, 大西諒貴, 山下裕樹, 安江博, 西堀正英
    • Organizer
      日本DNA多型学会第25回学術集会
    • Place of Presentation
      東京大学大気海洋研究所,柏市,千葉県
    • Year and Date
      2016-12-01
    • Related Report
      2016 Annual Research Report
  • [Presentation] 陳旧試料に対する簡易検出PAS法を用いた分子種判別法の構築2016

    • Author(s)
      伊藤文香, 大西諒貴, 山下裕樹, 安江博, 西堀正英
    • Organizer
      日本動物遺伝育種学会第17回年次大会
    • Place of Presentation
      名古屋大学,名古屋市,愛知
    • Year and Date
      2016-11-05
    • Related Report
      2016 Annual Research Report
  • [Presentation] リュウキュウイノシシにおける上顎骨の形態にみとめられる地理的差異および分子系統解析2016

    • Author(s)
      竹内佳子, 濱田秀一, 荒谷友美, 伊藤真穂, 安田喜禮, 庭田悟, 下桐猛, 安江博, 西堀正英, 黒澤弥悦
    • Organizer
      日本哺乳類学会2016年度大会
    • Place of Presentation
      筑波大学,つくば市,茨城
    • Year and Date
      2016-09-23
    • Related Report
      2016 Annual Research Report
  • [Presentation] Morphological and molecular phylogenetics analysis of Ryukyu wild boar2016

    • Author(s)
      Keiko Takeuchi, Shuichi Hamada, Tomomi Aratani, Maho Ito, Yaetsu Kurosawa, Masaru Takada, Satoru Niwata, Takeshi Shimogiri, Shin Watanabe, Hiroshi Yasue, Masahide Nishibori
    • Organizer
      The 17th Asian-Australasian Association of Animal Production Society Animal Science Congress
    • Place of Presentation
      Hakata, Fukuoka, Japan
    • Year and Date
      2016-08-22
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Origin of a porcine SNP of prolactin receptor gene2016

    • Author(s)
      Tomomi Aratani, Keiko Takeuchi, Shuichi Hamada, Yaetsu Kurosawa, Satoru Niwata, Takeshi Shimogiri, Hiroshi Yasue, Masahide Nishibori
    • Organizer
      The 17th Asian-Australasian Association of Animal Production Society Animal Science Congress
    • Place of Presentation
      Hakata, Fukuoka, Japan
    • Year and Date
      2016-08-22
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] tudy on domestication process of Asian Junglefowls2016

    • Author(s)
      Yuto Kurosawa, Sayed A.-M. Osman, Yoshio Yamamoto and Masahide Nishibori
    • Organizer
      The 17th Asian-Australasian Association of Animal Production Society Animal Science Congress
    • Place of Presentation
      Hakata, Fukuoka, Japan
    • Year and Date
      2016-08-22
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] tudy on molecular discrimination for animal species using DNA polymorphism2016

    • Author(s)
      Fumika Ito, Ryoki Onishi, Hiroki Yamashita, Hiroshi Yasue, Masahide Nishibori
    • Organizer
      The 17th Asian-Australasian Association of Animal Production Society Animal Science Congress
    • Place of Presentation
      Hakata, Fukuoka, Japan
    • Year and Date
      2016-08-22
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular phylogenetic analysis of Sus scrofa and the origin of SNP for Quantitative trait2016

    • Author(s)
      Tomomi Aratani, Keiko Takeuchi, Shuichi Hamada, Yaetsu Kurosawa, Satoru Niwata, Takeshi Shimogiri, Hiroshi Yasue, Masahide Nishibori
    • Organizer
      PAG in Asia 2016
    • Place of Presentation
      Singapore
    • Year and Date
      2016-06-06
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] アジアにおけるヤケイの家禽化プロセス解析2016

    • Author(s)
      黒澤祐人・Sayed A.-M. Osman・山本義雄・西堀正英
    • Organizer
      日本家禽学会平成28年春季大会
    • Place of Presentation
      日本獣医生命科学大学,武蔵野市
    • Year and Date
      2016-03-30
    • Related Report
      2015 Annual Research Report
  • [Presentation] Complete mitochondrial genome of Japanese native chicken breed Tosa-jidori Gallus gallus shed light on the origin and evolution of Japanese native chickens.2016

    • Author(s)
      Sayed A.-M. Osman, Masahide Nishibori and Takahiro Yonezawa
    • Organizer
      日本家禽学会平成28年春季大会
    • Place of Presentation
      日本獣医生命科学大学,武蔵野市
    • Year and Date
      2016-03-30
    • Related Report
      2015 Annual Research Report
  • [Presentation] リュウキュウイノシシにおける上顎骨の形態にみとめられる地理的変異および分子系統解析2016

    • Author(s)
      竹内佳子, 濵田秀一, 荒谷友美, 黒澤弥悦, 庭田悟, 下桐猛, 安江博, 西堀正英
    • Organizer
      日本畜産学会第121回大会
    • Place of Presentation
      日本獣医生命科学大学,武蔵野市
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] ブタPSE肉関連SNPにおける分子系統学的考察2016

    • Author(s)
      荒谷友美, 竹内 佳子, 濱田 秀一, 黒澤 弥悦, 庭田 悟, 下桐 猛, 安江 博, 西堀 正英
    • Organizer
      日本畜産学会第121回大会
    • Place of Presentation
      日本獣医生命科学大学,武蔵野市
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] Genetic structure and diversity of Egyptian native chicken as inferred from the complete mitochondrial DNA D-loop sequence and its played role on the origin and evolution of African native chickens2016

    • Author(s)
      Sayed A.-M. Osman, Takahiro Yonezawa and Masahide Nishibori
    • Organizer
      PAG(Plant and Animal Genome XXIV Conference)
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2016-01-10
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ミトゲノムと核ゲノムを用いたアジアのイノシシとブタとの遺伝的類縁関係2015

    • Author(s)
      竹内佳子、濵田秀一、黒澤弥悦、庭田悟、下桐猛、安江博、西堀正英
    • Organizer
      日本動物遺伝育種学会第16回年次大会
    • Place of Presentation
      神戸大学大学院農学研究科,神戸市
    • Year and Date
      2015-11-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] イノシシおよびブタにおいて経済形質と関連が報告されているSNPの分子系統学的考察2015

    • Author(s)
      荒谷友美, 竹内 佳子, 濱田 秀一, 黒澤 弥悦, 庭田 悟, 下桐 猛, 安江 博, 西堀 正英
    • Organizer
      日本動物遺伝育種学会第16回年次大会
    • Place of Presentation
      神戸大学大学院農学研究科,神戸市
    • Year and Date
      2015-11-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] Genetic Structure and Diversity of Southeast Asian Native Pig Populations Analyzed Using SNPs2015

    • Author(s)
      Keiko TAKEUCHI, Syuichi HAMADA, Yaetsu KUROSAWA, Masaru TAKADA, Satoru NIWATA, Takeshi Shimogiri, Hiroshi YASUE, and Masahide NISHIBORI.
    • Organizer
      PAG in ASIA 2015
    • Place of Presentation
      Singapore
    • Year and Date
      2015-07-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] リュウキュウイノシシを含むアジアのイノシシ・ブタと欧米商用豚の SNP 解析とその分子系統解析2015

    • Author(s)
      濱田 秀一・黒澤 弥悦・高田 勝・庭田 悟・下桐 猛・竹内 佳子・安江 博・西堀 正英
    • Organizer
      日本畜産学会第119回大会
    • Place of Presentation
      宇都宮大学
    • Year and Date
      2015-03-28 – 2015-03-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] リュウキュウイノシシの遺伝的多様性およびニホンイノシシとの比較ゲノム解析2015

    • Author(s)
      西堀 正英1 ・浜田 秀一・竹内 佳子 ・米澤 隆弘・安江 博・川原 玲香 ・河野 友宏・ 黒澤 弥悦
    • Organizer
      日本畜産学会第119回大会
    • Place of Presentation
      宇都宮大学
    • Year and Date
      2015-03-28 – 2015-03-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] SNPs によるアジアのイノシシとブタとの遺伝的類縁関係2015

    • Author(s)
      竹内佳子 ・濵田秀一 ・黒澤弥悦・庭田 悟・下桐 猛・ 小林栄治・安江 博・西堀正英
    • Organizer
      第 102 回日本養豚学会大会
    • Place of Presentation
      日本大学湘南キャンパス
    • Year and Date
      2015-03-13 – 2015-03-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] Origin and Genetic Diversity of Egyptian Native Chickens Based on Complete Sequence of Mitochondrial DNA D-loop Region2015

    • Author(s)
      Sayed Abdel-Maksoud Osman, Takahiro Yonezawa and Masahide Nishibori
    • Organizer
      The 1st International Conference on Native Chicken (ICONC2015)
    • Place of Presentation
      Kon Kaen University, Thailand
    • Year and Date
      2015-02-23 – 2015-02-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Genetic structure and diversity of the Ryukyu wild boar population analyzed using SNPs2014

    • Author(s)
      Syuichi Hamada, Yaetsu Kurosawa, Masaru Takada, Satoru Niwata, Takeshi Shimogiri, Keiko Takeuchi, Ryoki Onishi, Hiroshi Yasue, Masahide Nishibori
    • Organizer
      The 16th AAAP 2014
    • Place of Presentation
      Gadjah Mada University
    • Year and Date
      2014-11-08 – 2014-11-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] SNPs解析によって明らかとなった 東南アジア在来豚集団への 欧米商用豚遺伝子の移入2014

    • Author(s)
      濵田 秀一, 黒澤 弥悦, 高田 勝, 下桐 猛, 竹内佳子, 大西 諒貴, 安江 博, 西堀正英
    • Organizer
      日本動物遺伝育種学会2014
    • Place of Presentation
      独立行政法人理化学研究所(埼玉県和光市広沢2-1)
    • Year and Date
      2014-10-30 – 2014-11-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] 琉球諸島と奄美群島に生息するリュウキュウイノシシの遺伝的集団構造2014

    • Author(s)
      濵田秀一,黒澤弥悦,高田勝,庭田悟,下桐猛,竹内佳子,大西諒貴, 安江博,西堀正英
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      京都大学
    • Year and Date
      2014-09-05 – 2014-09-06
    • Related Report
      2014 Annual Research Report
  • [Remarks] 日本型(発)畜産・酪農技術開発センター

    • URL

      http://www.rcas.hiroshima-u.ac.jp/index.html

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2022-02-16  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi