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Peptide mimics to control protein functions on the surface of proteins

Research Project

Project/Area Number 26293002
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Chemical pharmacy
Research InstitutionThe University of Tokyo

Principal Investigator

OHWADA Tomohiko  東京大学, 薬学研究科(研究院), 教授 (20177025)

Research Collaborator FIRMAN  
INOMATA Satoru  
ZHAI Luhan  
OCAMPO Diego  
OTANI Yuko  
IKEDA Hirotaka  
KAWAHATA Masatoshi  
YAMAGUCHI Kentaro  
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Fiscal Year 2016: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2015: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2014: ¥8,450,000 (Direct Cost: ¥6,500,000、Indirect Cost: ¥1,950,000)
Keywordsペプチド / 水素結合 / ヘリックス / S-NO化 / S-ニトロソ化 / プロリン / ヘリックス分子 / タンパク質の表面認識 / 薬学 / 有機化学 / アミド / トランスニトロソ化 / ニトロソアミン / 非平面化 / TRPチャネル / N-ニトロソアミン / 可視光照射 / アミド結合 / シス-トランス動的平衡 / トランス-アミド
Outline of Final Research Achievements

The amide bond is a key linkage in proteins, peptides and peptide mimics, serving to connect two neighbouring amino acids or analogues. Most amide bonds are planar, but nonplanar amide structures have been suggested to occur even in proteins and peptides. Although the magnitude of nonplanarity found in proteins and peptides is not large, some nonplanar amides with distinct ground states have been reported. In such non-planar amides, the nitrogen atom gains a partial sp3-character (i.e., nitrogen-pyramidalization), and at the same time bond-twisting occurs. While hydrogen-bonding to the pyramidalized electron-rich nitrogen atom has been experimentally and computationally investigated, there has been little study on the possibility of hydrogen bonding to the electron-deficient carbonyl oxygen atom of non-planar amides. We studied hydrogen bonding of 7-azabicyclo[2.2.1]heptane amides, which are chemically stable and intrinsically nonplanar.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (32 results)

All 2017 2016 2015 2014 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Acknowledgement Compliant: 4 results,  Open Access: 1 results) Presentation (22 results) (of which Int'l Joint Research: 2 results) Remarks (5 results)

  • [Journal Article] Molecular Dynamics Study of Nitrogen-Pyramidalized Bicyclic β-Proline Oligomers: Length-Dependent Convergence to Organized Structure2017

    • Author(s)
      Yuko Otani, Satoshi Watanabe, Tomohiko Ohwada, Akio Kitao
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 121 Issue: 1 Pages: 100-109

    • DOI

      10.1021/acs.jpcb.6b10668

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Hydrogen Bonding to Carbonyl Oxygen of Nitrogen-Pyramidalized Amide – Detection of Pyramidalization Direction Preference by Vibrational Circular Dichroism Spectroscopy.2016

    • Author(s)
      Wang S., Taniguchi T. , Monde K. ,Kawahata M., Yamaguchi K., Otani Y.,Ohwada T.
    • Journal Title

      Chem. Commun.

      Volume: 52 Issue: 21 Pages: 4018-4021

    • DOI

      10.1039/c6cc00284f

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Trans-nitrosylation directs TRPA1 selectivity in N-nitrosamine activators2014

    • Author(s)
      Daisuke Kozai, Yoji Kabasawa, Maximilian Ebert, Shigeki Kiyonaka, Firman, Yuko Otani, Tomohiro Numata, Nobuaki Takahashi, Yasuo Mori, Tomohiko Ohwada
    • Journal Title

      Molecular Pharmacology

      Volume: 85 Pages: 175-185

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Robust Trans-Amide Helical Structure of Oligomers of Bicyclic Mimics of β-Proline: Impact of Positional Switching of Bridgehead Substituent on Amide Cis-Trans Equilibrium.2014

    • Author(s)
      Siyuan Wang; Yuko Otani; Xin Liu; Masatoshi Kawahata; Kentaro Yamaguchi; Tomohiko Ohwada
    • Journal Title

      Journal of Organic Chemistry

      Volume: 79 Issue: 11 Pages: 5287-5300

    • DOI

      10.1021/jo500916j

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Deciphering Subtype-Selective Modulations in TRPA1 Biosensor Channels2014

    • Author(s)
      Daisuke Kozai, Reiko Sakaguchi, Tomohiko Ohwada and Yasuo Mori
    • Journal Title

      Curr. neuropharmacol

      Volume: 14 Issue: 999 Pages: 1-1

    • DOI

      10.2174/1570159x12666141009212356

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Presentation] Development of Bicyclic N-Nitrosamines as Photo-triggered Small-Molecule NOS Mimics: Controllable Concentration of Released NO and High Cellular Retention Ability2017

    • Author(s)
      Tomohiko Ohwada
    • Organizer
      The 9th International Conference on the Biology, Chemistry , and Therapeutic Applications of Nitric Oxide
    • Place of Presentation
      仙台国際センター (宮城県、仙台市)
    • Year and Date
      2017-05-22
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Chemical characterization of Transnitrosylation. Study of model system.2017

    • Author(s)
      Satoru Inomata
    • Organizer
      The 9th International Conference on the Biology, Chemistry , and Therapeutic Applications of Nitric Oxide
    • Place of Presentation
      仙台国際センター (宮城県、仙台市)
    • Year and Date
      2017-05-22
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] プロリン型人工アミノ酸を含むペプチドの分子動力学計算2016

    • Author(s)
      Yuko Otani1, Satoshi Watanabe1, Akio Kitao2, Tomohiko Ohwada1
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] S-トランスニトロソ化反応の特異性と生体内モデル反応の解析2016

    • Author(s)
      猪股 悟, フィルマン, 尾谷 優子, 大和田 智彦
    • Organizer
      第60回日本薬学会 関東支部大会
    • Place of Presentation
      東京大学大学院薬学系研究科 (東京都文京区)
    • Year and Date
      2016-09-17
    • Related Report
      2016 Annual Research Report
  • [Presentation] Development of Bicyclic N-Nitrosamines as Photo-triggered Small-Molecule NOS Mimics: Controllable Cellular Retention and Release of NO in Cells2016

    • Author(s)
      大和田 智彦
    • Organizer
      生理学研究所研究会 TRP研究会2016「TRPs and SOCs ~脂質シグナルのアクセプター~」
    • Place of Presentation
      岡崎カンファレンスセンター(愛知県岡崎市)
    • Year and Date
      2016-06-02
    • Related Report
      2016 Annual Research Report
  • [Presentation] 可視光感受性二環性ニトロソアミンを用いるCaged NO化合物の生細胞応用のための構造最適化2015

    • Author(s)
      フィルマン・中嶋隆浩・猪股悟・尾谷優子・浦野泰照・佐藤守俊・大和田智彦
    • Organizer
      第45回複素環化学討論会
    • Place of Presentation
      早稲田大学(東京・東京都)
    • Year and Date
      2015-11-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] 二環性β-プロリンオリゴマーの規則構造化の鎖長依存性2015

    • Author(s)
      尾谷優子・王思遠・北尾彰朗・渡辺恵・大和田智彦
    • Organizer
      第45回複素環化学討論会
    • Place of Presentation
      早稲田大学(東京・東京都)
    • Year and Date
      2015-11-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] New helical foldamer with 1:1 alpha/beta amino acid residue patterns2015

    • Author(s)
      Siyuan Wang, Yuko Otani, Masatoshi Kawahata, Kentaro Yamaguchi, Tomohiko Ohwada
    • Organizer
      第52回ペプチド討論会
    • Place of Presentation
      平塚中央公民館(平塚・神奈川県)
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] Alkaline hydrolysis of nonplanar bicyclic β-proline amides2015

    • Author(s)
      Diego Antonio Ocmapo Gutierrez de Velasco, Zhai Liuhan, Siyuan Wang, Yuko Otani, Tomohiko Ohwada
    • Organizer
      第52回ペプチド討論会
    • Place of Presentation
      平塚中央公民館(平塚・神奈川県)
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] Synthesis and conformational study of hetero-dimers of bicyclic proline derivatives2015

    • Author(s)
      Luhan Zhai, Diego Ocampo, Siyuan Wang, Yuko Otani, Tomohiko Ohwada
    • Organizer
      第52回ペプチド討論会
    • Place of Presentation
      平塚中央公民館(平塚・神奈川県)
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] タンパク質S-トランスニトロソ化反応のモデル系構築2015

    • Author(s)
      猪股 悟・フィルマン フィルマン・尾谷優子・大和田智彦
    • Organizer
      第26回基礎有機化学討論会
    • Place of Presentation
      愛媛大学(松山・愛媛県)
    • Year and Date
      2015-09-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] アルカリ加水分解に対する二環性β-プロリンアミドの安定性2015

    • Author(s)
      ディエゴアントニオオカンポグティエレスデベラスコ、ザイルーハン、 劉シン、王思遠、尾谷優子、大和田智彦
    • Organizer
      第59回日本薬学会関東支部大会
    • Place of Presentation
      日本大学(船橋・千葉県)
    • Year and Date
      2015-09-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] 二環性プロリン誘導体のヘテロジペプチドのコンホメーション解析2015

    • Author(s)
      ザイ ルーハン、ディエゴ オカンポ、劉 シン、王 思遠、尾谷 優子、 大和田 智彦
    • Organizer
      第59回日本薬学会関東支部大会
    • Place of Presentation
      日本大学(船橋・千葉県)
    • Year and Date
      2015-09-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] 二環性ニトロソアミンを用いた生細胞内に保持能を 持つ可視光応答型ケージドNO 化合物の最適化2015

    • Author(s)
      Firman, 中島 隆浩, 猪股 悟, 尾谷 優子, 浦野 泰照, 佐藤 守俊, 大和田 智彦
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 架橋した二環性β-アミノ酸二量体のアミド結合の回 転速度の鎖長効果2015

    • Author(s)
      劉 シン, 岩間 道政, 尾谷 優子, 川幡 正俊, 山口 健太郎, 大和田 智彦
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] α-アミノ酸を連結させた二環性β-プロリンミミッ クのコンホメーション解析2015

    • Author(s)
      ザイ ルーハン, 劉 シン, 王 思遠, ディエゴ オカ ンポ, 尾谷 優子, 大和田 智彦
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 二環性β-プロリンオリゴマーによる剛直なトランスアミドヘリックスの創製と規則構造化の評価2014

    • Author(s)
      尾谷優子,王思遠,劉シン,Diego A. Ocampo G. de V. ,ザイルーハン,北尾彰朗,川幡正俊,山口健太郎,大和田智彦
    • Organizer
      第40回反応と合成の進歩シンポジウム
    • Place of Presentation
      仙台
    • Year and Date
      2014-11-10 – 2014-11-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] 可視光照射により一酸化窒素を放出するニトロソアミンの生細胞への応用2014

    • Author(s)
      フィルマン,中島隆浩,猪股悟,尾谷優子,浦野泰照, 佐藤守俊,大和田智彦
    • Organizer
      第58回日本薬学会関東支部大会
    • Place of Presentation
      昭和薬科大学
    • Year and Date
      2014-10-04
    • Related Report
      2014 Annual Research Report
  • [Presentation] 水中におけるS-トランスニトロソ化反応モデルの構築2014

    • Author(s)
      猪股悟,フィルマン,尾谷優子,大和田智彦
    • Organizer
      第58回日本薬学会関東支部大会
    • Place of Presentation
      昭和薬科大学
    • Year and Date
      2014-10-04
    • Related Report
      2014 Annual Research Report
  • [Presentation] 橋頭位置換二環性β-アミノ酸ミミックのアミド構造の一般性2014

    • Author(s)
      ザイルーハン,ディエゴオカンポ,劉シン,王思遠,尾谷優子,大和田智彦
    • Organizer
      第58回日本薬学会関東支部大会
    • Place of Presentation
      昭和薬科大学
    • Year and Date
      2014-10-04
    • Related Report
      2014 Annual Research Report
  • [Presentation] 二環性β-アミノ酸ミミックのアミド結合の反応性2014

    • Author(s)
      ディエゴオカンポ,ザイルーハン,劉シン,王思遠,尾谷優子,大和田智彦
    • Organizer
      第58回日本薬学会関東支部大会
    • Place of Presentation
      昭和薬科大学
    • Year and Date
      2014-10-04
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of Nitric Oxide Releasing Nitrosamines upon Visible-Light Irradiation, Highly Retainable in Cells2014

    • Author(s)
      Firman, Takahiro Nakajima, Satoru Inomata, Yuko Otani, Yasuteru Urano, Moritoshi Sato, Tomohiko Ohwada
    • Organizer
      Nitric Oxide - Nitrite/Nitrate Conference
    • Place of Presentation
      Cleveland. U.S.A.
    • Year and Date
      2014-06-16 – 2014-06-20
    • Related Report
      2014 Annual Research Report
  • [Remarks] 研究活動(研究室のHP)

    • URL

      http://www.f.u-tokyo.ac.jp/~yakka/activity.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 論文紹介(研究室のHP)

    • URL

      http://www.f.u-tokyo.ac.jp/~yakka/article.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 東京大学大学院薬学系研究科 薬化学教室 研究活動

    • URL

      http://www.f.u-tokyo.ac.jp/~yakka/activity.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 東京大学大学院薬学系研究科 薬化学教室 論文紹介

    • URL

      http://www.f.u-tokyo.ac.jp/~yakka/article.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] Publications

    • URL

      http://www.f.u-tokyo.ac.jp/~yakka/english/publications.html

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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