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Regulation of helper/cytotoxic lineage choice by chromatin structures

Research Project

Project/Area Number 26293109
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Immunology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Taniuchi Ichiro  国立研究開発法人理化学研究所, 統合生命医科学研究センター, グループディレクター (20284573)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2016: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2015: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2014: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
KeywordsT細胞分化 / 転写因子 / クロマチン / クロマチン構造 / 細胞分化 / 系列決定 / 免疫学 / 遺伝子発現制御 / CD4/CD8系列決定
Outline of Final Research Achievements

Helper versus cytotoxic lineage choice by T lymphocyte precursors serves as a good model to investigate how external environmental cue, TCR signals in this case, is integrated into genetic programming that govern cell fates. Since regulation of Thpok gene is a key to segregate these two fates, we examined how Thpok is regulated.
By using insertion ChIP, we found that cis-regulatory regions in the Thpok gene is assembled into the close proximity specifically in cytotoxic lineage. We also revealed that priming of Thpok gene by Bcl11b transcription factor, more specifically its C-terminal end Zinc-finger motif, during early thymocyte differentiation is essential for later coupling of TCR signals with appropriate Thpok expression. Lastly, our data unraveled that a genome organizer SATB1 plays essential roles in regulating expression of lineage specifying genes such as Thpok, Runx3 and Foxp3, to specify effect tor T cell subset.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (46 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (24 results) (of which Int'l Joint Research: 11 results,  Peer Reviewed: 23 results,  Open Access: 13 results,  Acknowledgement Compliant: 7 results) Presentation (21 results) (of which Int'l Joint Research: 8 results,  Invited: 16 results)

  • [Int'l Joint Research] UCSF(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Distinct requirement of Runx complexes for TCRβ enhancer activation at distinct developmental stages.2017

    • Author(s)
      Seo W, Muroi S, Akiyama K and Taniuchi I.
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 41351-41351

    • DOI

      10.1038/srep41351

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment.2017

    • Author(s)
      Kitagawa Y, Ohkura N, Kidani Y, Vandenbon A, Hirota K, Kawakami R, Yasuda K, Motooka D, Nakamura S, Kondo M, Taniuchi I, Kohwi-Shigematsu T, Sakaguchi S.
    • Journal Title

      Nat Immunol.

      Volume: 18(2) Issue: 2 Pages: 173-183

    • DOI

      10.1038/ni.3646

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Essential roles of SATB1 in specifying T lymphocyte subsets2017

    • Author(s)
      Kakugawa K, Kojo S, Tanaka H, Seo W, Endo T, Kitagawa Y, Muroi S, Teno M, Yasmin N, Kohwi Y, Sakaguchi S, Kowhi-Shigematsu, T and Taniuchi I.
    • Journal Title

      Cell Reports

      Volume: 印刷中

    • NAID

      40021496454

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Regulation of hematopoiesis and immune responses by long noncoding (lnc) RNAs2017

    • Author(s)
      Seo.W and Taniuchi I.
    • Journal Title

      International Immunology

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Runx3 guards cytotoxic CD8+ effectors against Tfh deviation in acute viral infection2017

    • Author(s)
      Shan Q, Zeng Z, Xing S, Li F, Hartwig S, Gullicksrud J, Su Y, Kurup S, Badovinac N, Su Y, Martin M, Taniuchi I, Harty J, Peng W, Badvinac V and Xue H-H
    • Journal Title

      Nature Immunology

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Views on helper/cytotoxic lineage choice from a bottom-up approach.2016

    • Author(s)
      Taniuchi I
    • Journal Title

      Immunol Rev.

      Volume: 271 Issue: 1 Pages: 98-113

    • DOI

      10.1111/imr.12401

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Core Binding Factor β Plays a Critical Role During Chondrocyte Differentiation.2016

    • Author(s)
      Park NR, Lim KE, Han MS, Che X, Park CY, Kim JE, Taniuchi I, Bae SC, Choi JY
    • Journal Title

      J Cell Physio

      Volume: 231 Issue: 1 Pages: 162-71

    • DOI

      10.1002/jcp.25068

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Transcriptional regulation of early T-cell development in the thymus.2016

    • Author(s)
      Seo W, Taniuchi I
    • Journal Title

      Eur J Immunol.

      Volume: 46 Issue: 3 Pages: 531-8

    • DOI

      10.1002/eji.201545821

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Cbfb2 Isoform Dominates More Potent Cbfb1 and Is Required for Skeletal Development.2016

    • Author(s)
      Jiang Q, Qin X, Kawane T, Komori H, Matsuo Y, Taniuchi I, Ito K, Izumi S, Komori T
    • Journal Title

      J Bone Miner Res

      Volume: 印刷中 Issue: 7 Pages: 1391-1404

    • DOI

      10.1002/jbmr.2814

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] ThPOK represses CXXC5, which induces methylation of histone H3 lysine 9 in Cd40lg promoter by association with SUV39H1: implications in repression of CD40L expression in CD8+ cytotoxic T cells.2016

    • Author(s)
      Tsuchiya Y, Naito T, Tenno M, Maruyama M, Koseki H, Taniuchi I, Naoe Y.
    • Journal Title

      J Leukoc Biol.

      Volume: 印刷中 Issue: 2 Pages: 327-338

    • DOI

      10.1189/jlb.1a0915-396rr

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An anti-silencer- and SATB1-dependent chromatin hub regulates Rag1 and Rag2 gene expression during thymocyte development2015

    • Author(s)
      Bingtao Hao, Abani Kanta Naik , Akiko Watanabe , Hirokazu Tanaka , Liang Chen , Hunter W Richards, Motonari Kondo, Ichiro Taniuchi, Yoshinori Kohwi, Terumi Kohwi-Shigematsu, Michael S Krangel
    • Journal Title

      Journal of experimental medicine

      Volume: 212 Issue: 5 Pages: 809-824

    • DOI

      10.1084/jem.20142207

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Central role of core binding factor β2 in mucosa-associated lymphoid tissue organogenesis in mouse2015

    • Author(s)
      T. Nagatake, S. Fukuyama, S. Sato, H. Okura, M. Tachibana, I. Taniuchi, K. Ito, M. Shimojou, N. Matsumoto, H, Suzuki, J. Kunisawa, and H. Kiyono
    • Journal Title

      PLoS ONE

      Volume: 10 Issue: 5 Pages: e0127460-e0127460

    • DOI

      10.1371/journal.pone.0127460

    • NAID

      120006987038

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Identification of a novel lymphoid population in the murine epidermis.2015

    • Author(s)
      Almeida FF, Tenno M, Brzostek J, Li JL, Allies G, Hoeffel G, See P, Ng LG, Fehling HJ, Gascoigne NR, Taniuchi I, Ginhoux F.
    • Journal Title

      Sci Rep

      Volume: 5 Issue: 1 Pages: 12554-12554

    • DOI

      10.1038/srep12554

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] MAZR and Runx factors synergistically repress ThPOK during CD8+ T cell lineage development.2015

    • Author(s)
      Sakaguchi S, Hainberger D, Tizian C, Tanaka H, Okuda T, Taniuchi I, Ellmeier W
    • Journal Title

      Journal of Immunology

      Volume: 195 Issue: 6 Pages: 2879-2887

    • DOI

      10.4049/jimmunol.1500387

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A novel Cd8-cis-regulatory element preferentially directs expression in CD44hiCD62L+ CD8+ T cells and in CD8αα+ dendritic cells.2015

    • Author(s)
      Sakaguchi S, Hombauer M, Hassan H, Tanaka H, Yasmin N, Naoe Y, Bilic I, Moser MA, Hainberger D, Mayer H, Seiser C, Bergthaler A, Taniuchi I, Ellmeier W.
    • Journal Title

      J Leukoc Biol.

      Volume: 97 Issue: 4 Pages: 635-644

    • DOI

      10.1189/jlb.1hi1113-597rr

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lineage-specific compaction of Tcrb requires a chromatin barrier to protect the function of a long-range tethering element.2015

    • Author(s)
      Majumder K, Koues O, Chan E, Kyle K, Horowitz J, Yang-Iott K, Bassing C, Taniuchi I, Krangel M, Oltz E
    • Journal Title

      J.Exp.Med.

      Volume: 212 Issue: 1 Pages: 107-20

    • DOI

      10.1084/jem.20141479

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Runx/Cbfb signaling regulates postnatal development of granular convoluted tubule in the mouse submandibular gland.2015

    • Author(s)
      Islam MN, Itoh S, Yanagita T, Sumiyoshi K, Hayano S, Kuremoto K, Kurosaka H, Honjo T, Kawanabe N, Kamioka H, Sakai T, Ishimaru N, Taniuchi I, Yamashiro T
    • Journal Title

      Dev Dyn.

      Volume: 244(3) Issue: 3 Pages: 488-496

    • DOI

      10.1002/dvdy.24231

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cbfb regulates bone development by stabilizing Runx family proteins.2015

    • Author(s)
      Qin X, Jiang Q, Matsuo Y, Kawane T, Komori H, Moriishi T, Taniuchi I, Ito K, Kawai Y, Rokutanda S, Izumi S, Komori T.
    • Journal Title

      Journal of bone and mineral research

      Volume: 30 Issue: 4 Pages: 706-714

    • DOI

      10.1002/jbmr.2379

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Histone acetylation mediated by Brd1 is crucial for Cd8 gene activation during early thymocyte development.2014

    • Author(s)
      Mishima Y, Wang C, Miyagi S, Saraya A, Hosokawa H, Mochizuki-Kashio M, Nakajima-Takagi Y, Koide S, Negishi M, Sashida G, Naito T, Ishikura T, Onodera A, Nakayama T, Tenen DG, Yamaguchi N, Koseki H, Taniuchi I, Iwama A.
    • Journal Title

      Nature Communications

      Volume: 18 Issue: 1 Pages: 5872-5882

    • DOI

      10.1038/ncomms6872

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cbfb deficiency results in differentiation blocks and stem/progenitor cell expansion in hematopoiesis.2014

    • Author(s)
      Wang CQ, Chin DW, Chooi JY, Wee Joo C, Taniuchi I, Tergaonkar V, Osato M.
    • Journal Title

      Leukemia

      Volume: 29 Issue: 3 Pages: 753-7

    • DOI

      10.1038/leu.2014.316

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Role of BTB-Zinc Finger Transcription Factors During T Cell Development and in the Regulation of T Cell-mediated Immunity.2014

    • Author(s)
      Ellmeier W, Taniuchi I.
    • Journal Title

      Curr Top Microbiol Immunol.

      Volume: 381 Pages: 21-49

    • DOI

      10.1007/82_2014_374

    • ISBN
      9783319073941, 9783319073958
    • Related Report
      2014 Annual Research Report
  • [Journal Article] Functional B-1 progenitor cells are present in the hematopoietic stem cell deficient embryo and depend on Cbfβ for their development.2014

    • Author(s)
      Kobayashi M, Shelly CW, Seo W, Vemula S, Liu Y, Taniuchi I and Yoshimoto M.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 111 Issue: 33 Pages: 12151-6

    • DOI

      10.1073/pnas.1407370111

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Disruption of Runx1 and Runx3 leads to bone marrow failure and leukemia predisposition due to transcriptional and DNA repair defects.2014

    • Author(s)
      Wang CQ, Krishnan V, Tay LS, Chin DW, Koh CP, Chooi JY, Nah GS, Du L, Jacob B, Yamashita N, Lai SK, Tan TZ, Mori S, Taniuchi I, Tergaonkar V, Ito Y, Osato M.
    • Journal Title

      Cell Reports

      Volume: 8 Pages: 767-82

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CD4^+ T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC22014

    • Author(s)
      Boucheron N, Tschismarov R, Goeschl L, Moser M.A, Lagger S, Sakaguchi S, Winter M, Lenz F, Vitko D, Breitwieser FP, Muller L, Hassan H, Bennett K.L, Colinge J, Schreiner W, Egawa T, Taniuchi I, Matthias P, Seiser C Ellmeier W
    • Journal Title

      Nat. Immunol

      Volume: 15 Issue: 5 Pages: 439-448

    • DOI

      10.1038/ni.2864

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Runs 転写因子による獲得免疫系の発生制御機構2017

    • Author(s)
      谷内 一郎
    • Organizer
      122回 日本解剖学会
    • Place of Presentation
      長崎大学
    • Year and Date
      2017-03-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Transcriptional program that confer thymus homing capacity2017

    • Author(s)
      谷内 一郎
    • Organizer
      第7回国際KTCC
    • Place of Presentation
      京都大学
    • Year and Date
      2017-03-13
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 胸腺内Tリンパ球分化機構2016

    • Author(s)
      谷内 一郎
    • Organizer
      26回 日本サイトメトリー学会
    • Place of Presentation
      九州大学
    • Year and Date
      2016-07-23
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Regulation of Langerhans cell development by Runx transcription factor complexes2016

    • Author(s)
      谷内 一郎
    • Organizer
      Immunological Diseases and Translational Research Forum 2016
    • Place of Presentation
      Shanghai
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Repression of CCL5 by Runx/Cbfb is essential to prevent lung infiltration2015

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      RUNX 2015
    • Place of Presentation
      Rehovot, Israel
    • Year and Date
      2015-10-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Linking environment cues with mechanisms that control specification of T lymphocyte lineages requires a proper positioning of regulatory regions2015

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      EMBO conference
    • Place of Presentation
      Paris, France
    • Year and Date
      2015-09-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Roles of SATB1 during Thymocyte Development2015

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      FASEB Conference
    • Place of Presentation
      Montana, USA
    • Year and Date
      2015-08-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] T細胞分化研究: 核内からTCR信号をつなぐ道のり2015

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      第17回免疫サマースクール2015,
    • Place of Presentation
      淡路国際会議場、日本
    • Year and Date
      2015-07-21
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Roles of SATB1 during thymocyte differentiation2015

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      KTCC2015
    • Place of Presentation
      京都, 日本
    • Year and Date
      2015-05-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] Roles of Bcl11b during thymocyte differentiation2015

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      Venice Thymus Meeting
    • Place of Presentation
      Venice, Italy
    • Year and Date
      2015-04-09
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Transcriptional Regulation of T Cell Development in the Thymus2015

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      Keystone Symposium
    • Place of Presentation
      Snowbirds, USA
    • Year and Date
      2015-04-01
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Cell fate determination in the thymus2014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      The 43rd Annual Meeting of Japanese Society of Immunology
    • Place of Presentation
      京都
    • Year and Date
      2014-12-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Road to become CD4 helper T cells2014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      Seminar at Duke University Medical Center, Department of Immunology
    • Place of Presentation
      Durham, NC, USA
    • Year and Date
      2014-11-13
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Road to become CD4 helper T Cells2014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      Seminar at Washington University in St. Louis School of Medicine, Department of Pathology & Immunology
    • Place of Presentation
      Saint Louis, MO, USA
    • Year and Date
      2014-11-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Transcriptional regulation of CD4/CD8 lineage choice: roles of Bcl11b and SATB12014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      France-Japan Immunology meeting
    • Place of Presentation
      Cassis, France
    • Year and Date
      2014-10-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Roles of Runx Transcription Factor Family During T Lymphocyte Development2014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      SIgN Immunology Seminar
    • Place of Presentation
      Singapore
    • Year and Date
      2014-08-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Transcriptional Control of Helper/Cytotoxic Lineage Choice in The Thymus2014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      RIKEN IMS-JSI International Symposium on Immunology 2014
    • Place of Presentation
      横浜
    • Year and Date
      2014-06-26
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Regulation of CD4 helper versus Cd8 cytotoxic lineage choice by transcription factors2014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      AIM Series Seminar
    • Place of Presentation
      Pohang, Korea
    • Year and Date
      2014-05-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Regulation of local chromatin loop at the Thpok in the CD4/CD8 lineage decision2014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      The 24th Kyoto T Cell Conference (KTCC 2014)
    • Place of Presentation
      京都
    • Year and Date
      2014-05-16
    • Related Report
      2014 Annual Research Report
  • [Presentation] Transcriptional conotrol of helper/cytotoxic lineage choice in the thymus2014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      AAI Immunology 2014
    • Place of Presentation
      Pittsburgh, Pennsylvania, USA
    • Year and Date
      2014-05-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Regulation of local chromatin loop at the Thpok in the CD4/CD8 lineage decision by Bcl11b and SATB12014

    • Author(s)
      Ichiro Taniuchi
    • Organizer
      Gene Expression & Signaling in the Immune System
    • Place of Presentation
      Cold Spring Harbor, NY, USA
    • Year and Date
      2014-04-23
    • Related Report
      2014 Annual Research Report

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Published: 2014-04-04   Modified: 2022-02-16  

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