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Research for fundamental algorithm of natural intelligence by means of mathematical science and biological information science

Research Project

Project/Area Number 26310202
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section特設分野
Research Field Mathematical Sciences in Search of New Cooperation
Research InstitutionHokkaido University

Principal Investigator

Nakagaki Toshiyuki  北海道大学, 電子科学研究所, 教授 (70300887)

Co-Investigator(Kenkyū-buntansha) 上田 肇一  富山大学, その他の研究科, 准教授 (00378960)
手老 篤史  九州大学, 学内共同利用施設等, 准教授 (60431326)
佐藤 勝彦  北海道大学, 電子科学研究所, 准教授 (90513622)
黒田 茂  北海道大学, 電子科学研究所, 助教 (90431303)
Project Period (FY) 2014-07-18 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥16,250,000 (Direct Cost: ¥12,500,000、Indirect Cost: ¥3,750,000)
Fiscal Year 2016: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2014: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Keywords生体生命情報処理 / アルゴリズム / 単細胞生物 / 数理モデリング / 行動 / 繊毛虫 / 粘菌 / 反応拡散方程式 / 単細胞
Outline of Final Research Achievements

We searched for common algorithm of problem-solving and information processing that may be shared by a range of species from single-celled organisms to higher animals, by describing the physical equations of motion for behavioral intelligence demonstrated in single-cell level. We threw light on protozoa like slime mold amoeba and ciliates as a model organism, and obtained the results on network optimization, learning behavior and primitive decision-making. On the network optimization, a common algorithm of use-and-growth rule was indicated in a range of functional morphogenesis from transport network in slime mold to mechanical structure of bone in higher animals, and geographical pattern of cities and roads in human society.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (49 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (2 results) Journal Article (13 results) (of which Int'l Joint Research: 2 results,  Acknowledgement Compliant: 10 results,  Peer Reviewed: 10 results,  Open Access: 4 results) Presentation (29 results) (of which Int'l Joint Research: 11 results,  Invited: 28 results) Book (3 results) Remarks (2 results)

  • [Int'l Joint Research] University of Oxford(United Kingdom)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Monash University(Australia)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] 粘菌の用不用適応能に倣った形状最適化設計法の検討2017

    • Author(s)
      吉原 一詞、中垣 俊之
    • Journal Title

      土木学会論文集 A2(応用力学)

      Volume: 72(2) Pages: 3-11

    • NAID

      130005311783

    • Related Report
      2016 Annual Research Report
    • Acknowledgement Compliant
  • [Journal Article] The Role of Noise in Self-organized Decision Making by the True Slime Mold Physarum polycephalum2017

    • Author(s)
      B. Meyer, C. Ansorge and T. Nakagaki
    • Journal Title

      PLOS ONE

      Volume: 印刷中

    • NAID

      120006219871

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Direct observation of orientation distributions of actin filaments in a solution undergoing shear banding2017

    • Author(s)
      K. Sato, I. Kunita, Y. Takikawa, D. Takeuchi, Y. Tanaka, T. Nakagaki and H. Orihara
    • Journal Title

      Soft Matter

      Volume: 13 Issue: 14 Pages: 2708-2716

    • DOI

      10.1039/c6sm02832b

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Studies of the phase gradient at the boundary of the phase diffusion equation, motivated by peculiar wave patterns of rhythmic contraction in the amoeboid movement of Physarum polycephalum2017

    • Author(s)
      M. Iima, H. Kori and T. Nakagaki
    • Journal Title

      Journal of Physics D: Applied Physics

      Volume: 50 Issue: 15 Pages: 154004-154004

    • DOI

      10.1088/1361-6463/aa6269

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Experimental models for Murray's law2017

    • Author(s)
      D. Akita, I. Kunita, M. Fricker, S. Kuroda, K. Sato and T. Nakagaki
    • Journal Title

      Journal of Physics D: Applied Physics

      Volume: 50

    • NAID

      120006377482

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] 人工知能と自然知能2016

    • Author(s)
      中垣 俊之
    • Journal Title

      情報処理

      Volume: 57 Pages: 2-3

    • NAID

      170000148154

    • Related Report
      2016 Annual Research Report
  • [Journal Article] A ciliate memorizes the geometry of a swimming arena2016

    • Author(s)
      I. Kunita, T. Yamaguchi, A. Tero, M. Akiyama, S. Kuroda and T. Nakagaki
    • Journal Title

      J. Roy. Soc. Interface

      Volume: 13 Issue: 118 Pages: 20160155-20160155

    • DOI

      10.1098/rsif.2016.0155

    • NAID

      120006220028

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Allometry in Physarum plasmodium during free locomotion: size versus shape, speed and rhythm2015

    • Author(s)
      Shigeru Kuroda, Seiji Takagi, Toshiyuki Nakagaki and Tetsuo Ueda
    • Journal Title

      Journal of Experimental Biology

      Volume: 218 Pages: 3729-3738

    • DOI

      10.1242/jeb.124354

    • NAID

      120005890019

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 物理エソロジーの道すがら2015

    • Author(s)
      中垣 俊之
    • Journal Title

      人工知能学会誌

      Volume: 30

    • Related Report
      2015 Annual Research Report
  • [Journal Article] 単細胞生物の物理エソロジー ー輸送現象論から読み解く賢さのしくみー2015

    • Author(s)
      中垣 俊之
    • Journal Title

      化学と工業

      Volume: 68

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 脚式と非脚式の這行ロコモーションにおける運動モードスイッチングの共通力学2015

    • Author(s)
      黒田 茂、田中 良巳、中垣 俊之
    • Journal Title

      計測と制御

      Volume: 54

    • NAID

      130005071698

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Periodic traction in migrating large amoeba of Physarum Polycephalum2015

    • Author(s)
      Jean-Paul Rieu, Helene Delano-Ayari, Seiji Takagi, Yoshimi Tanaka, Toshiyuki Nakagaki
    • Journal Title

      Journal of Royal Society Interface

      Volume: 12 Issue: 106 Pages: 20150099-20150099

    • DOI

      10.1098/rsif.2015.0099

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Attempts to retreat from a dead-ended long capillary by backward swimming in Paramecium2014

    • Author(s)
      Itsuki Kunita, Shigeru Kuroda, Kaito Ooki, Toshiyuki Nakagaki
    • Journal Title

      Frontiers in Microbiology

      Volume: 5 Pages: 1-8

    • DOI

      10.3389/fmicb.2014.00270

    • NAID

      120005465482

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 生物の用不用則に基づく機能的な形づくり2017

    • Author(s)
      中垣 俊之
    • Organizer
      第12回理研「バイオものづくりシンポジウム」
    • Place of Presentation
      理化学研究所(埼玉県、和光市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 粘菌の物理エソロジー2017

    • Author(s)
      中垣 俊之
    • Organizer
      レーザー学会「ナチュラルコンピューティングとレーザーカオス」シンポジウム
    • Place of Presentation
      徳島大学(徳島県、徳島市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Transport network in a micro-organism2017

    • Author(s)
      T. Nakagaki
    • Organizer
      MANA International Symposium 2017
    • Place of Presentation
      Tsukuba International Congress Center(茨城県、つくば市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 繊毛虫の学習行動2017

    • Author(s)
      中垣 俊之
    • Organizer
      津田一郎教授退官記念研究会ー複雑系数理の新展開ー
    • Place of Presentation
      北海道大学(北海道、札幌市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] Physical ethology of single-celled organism2016

    • Author(s)
      T. Nakagaki
    • Organizer
      The 5th International Symposium on Primatology and Wildlife Science
    • Place of Presentation
      Inuyama International Sightseeing Center, Inuyama, Aichi
    • Year and Date
      2016-03-03
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 単細胞のちょっと賢いはなし2016

    • Author(s)
      中垣 俊之
    • Organizer
      明治大学MIMS共同利用研究集会「比較動物学と現象数理学から考える「海の霊長類」の知の表現法」
    • Place of Presentation
      明治大学(東京都、中野区)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] テトラヒメナにおける空間形状への適応的遊泳2016

    • Author(s)
      中垣 俊之
    • Organizer
      日本微生物生態学会 日本原生生物学会共催シンポジウム「原生生物の環境センシングと運動」
    • Place of Presentation
      横須賀市文化会館(神奈川県、横須賀市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 生物の用不用則に基づく適応的なネットワーク設計2016

    • Author(s)
      中垣 俊之
    • Organizer
      電子情報通信学会情報ネットワーク科学時限研究専門委員会(NetSci)/複雑コミュニケーションサイエンス研究専門委員会(CCS)共催ワークショップ
    • Place of Presentation
      余市町中央公民館(北海道、余市町)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] physical ethology of single-celled organism2016

    • Author(s)
      T. Nakagaki
    • Organizer
      The 31st International Congress of Psychology, invited symposium [Ig Noble prize winners talk about the evolutionary basis of the human mind]
    • Place of Presentation
      Pacifico Yokohama(神奈川県、横浜市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Transport network in living systems designed by current-reinforcement rule2016

    • Author(s)
      T. Nakagaki
    • Organizer
      Asia pacific Consortium of Mathematics for Industry, Forum Math-for-Industry 2016, Agriculture as a metaphor for creativity in all human nendeavors
    • Place of Presentation
      Queensland University of Technology, Brisbane(オーストラリア)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Pattern formation of spatial distribution of town and transportation network -a case study on Hokkaido region-2016

    • Author(s)
      T. Nakagaki
    • Organizer
      Interdisciplinary Applications of Nonlinear Science
    • Place of Presentation
      Kagoshima University(鹿児島県、鹿児島市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] あるアメーバ型細胞の作る細胞内輸送ネットワーク2016

    • Author(s)
      中垣 俊之
    • Organizer
      ナノ学会ナノ機能応用部会講演会
    • Place of Presentation
      秋田県グランドパレス川端(秋田県、大仙市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] A ciliate memorizes the geometry of a swimming arena2016

    • Author(s)
      中垣 俊之
    • Organizer
      RIMS研究集会「集団ダイナミクスに現れる時空間パターンの数理」
    • Place of Presentation
      京都大学数理解析研究所(京都府、京都市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 粘菌:生きたゾルゲル変換体の形作りと機能作り2016

    • Author(s)
      中垣 俊之
    • Organizer
      第67回コロイドおよび界面化学討論会
    • Place of Presentation
      旭川市民文化会館(北海道、旭川市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 粘菌、数理モデリング、共同研究2016

    • Author(s)
      中垣 俊之
    • Organizer
      数理で解き明かす森羅万象~小林亮とゆかいな仲間たちの研究会~
    • Place of Presentation
      広島大学(広島県、東広島市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 粘菌の形作りと機能作り~力学の視点から~2016

    • Author(s)
      中垣 俊之
    • Organizer
      電気学会 新しい原子分子組織化物質・材料創出に向けた光・量子ビーム応用技術専門委員会講演会
    • Place of Presentation
      札幌市定山渓ビューホテル(北海道、札幌市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 原生生物粘菌の構造物最適化設計法ー用不用則なる適応能からー2016

    • Author(s)
      中垣 俊之
    • Organizer
      土木学会応用力学委員会主催第19回応用力学シンポジウム
    • Place of Presentation
      北海道大学(北海道、札幌市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 単細胞生物の賢さを探る2016

    • Author(s)
      中垣 俊之
    • Organizer
      第25回先端科学移動大学
    • Place of Presentation
      釧路市生涯学習センター(北海道、釧路市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Introduction to physical ethology2016

    • Author(s)
      T. Nakagaki
    • Organizer
      University of Bremen, Institute for biophysics SONDERKOLLOQUIUM
    • Place of Presentation
      University of Bremen(ドイツ)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Biomechanics of crawling locomotion in legged and limbless organisms2016

    • Author(s)
      T. Nakagaki
    • Organizer
      Berlin Center for Studies of Complex Chemical Systems regular seminar
    • Place of Presentation
      Berlin PTB Institute(ドイツ)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生き物に学ぶ最適化設計2016

    • Author(s)
      中垣 俊之
    • Organizer
      バイオミメティック市民セミナー
    • Place of Presentation
      北海道大学(北海道、札幌市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Adaptive dynamics for shape optimization inspired by the use-and-growth rule in a simple organism of slime mold2015

    • Author(s)
      T. Nakagaki
    • Organizer
      The 9th International Conference on Bio-inspired information and Communications Technologies
    • Place of Presentation
      Columbia University, New York, USA
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanics of Smart Behaviors -From amoeba to robot-2015

    • Author(s)
      R. Kobayashi and T. Nakagaki
    • Organizer
      International Conference on Systems Biology (ICSB2015)
    • Place of Presentation
      Biopolis, Singapore
    • Year and Date
      2015-11-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Biomechanics of peristaltic crawling in limbless and legged organism2015

    • Author(s)
      T. Nakagaki
    • Organizer
      International Conference on Mathematical Modeling and Applications 2015 -Self-organization Modeling and Analysis-
    • Place of Presentation
      Meiji University, Nakano, Tokyo
    • Year and Date
      2015-10-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Physical ethology of an amoeba2015

    • Author(s)
      T. Nakagaki
    • Organizer
      4th IFAC Conference on Analysis and Control of Chaotic Systems (IFAC CHAOS 2015)
    • Place of Presentation
      Tokyo Metropolitan University, Hachioji, Tokyo
    • Year and Date
      2015-08-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] イグノーベル賞顛末記ー単細胞の情報通信をめぐってー2014

    • Author(s)
      中垣俊之
    • Organizer
      電子情報通信学会アンテナ伝播研究会 IEEE AP-S JC 特別講演会
    • Place of Presentation
      北海道大学(北海道札幌市)
    • Year and Date
      2014-10-06
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Rules for biologically inspired network design2014

    • Author(s)
      Toshiyuki Nakagaki
    • Organizer
      Hokudai-NCTU Joint Symposium on Nano, Photo and Bio Sciences
    • Place of Presentation
      北海道大学(北海道札幌市)
    • Year and Date
      2014-09-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Transport network in bio-systems -From vein-network in Physarum-2014

    • Author(s)
      中垣俊之
    • Organizer
      国際高等研究所研究プロジェクト「ネットワーク科学」
    • Place of Presentation
      国際高等研究所(京都府木津川市)
    • Year and Date
      2014-08-04
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Biomechanics of peristaltic crawling in limbless and legged organism2014

    • Author(s)
      Toshiyuki Nakagaki
    • Organizer
      RIMS Conference Sapporo Summer Conference on Dynamics of patterns in material Science
    • Place of Presentation
      北海道大学(北海道札幌市)
    • Year and Date
      2014-07-26 – 2014-07-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] Brain evolution by design -From Neural origin to cognitive architecture- (Ed. by S. Shigeno, Y. Murakami, T. Nomura) ISBN: 978-4-431-56467-62017

    • Author(s)
      S. Kuroda, S. Takagi, T. Saigusa and T. Nakagaki
    • Total Pages
      21
    • Publisher
      Springer-Verlag
    • Related Report
      2016 Annual Research Report
  • [Book] "生命現象の物理学ー生物行動の運動方程式をめざしてー"、物理学ガイダンス2014

    • Author(s)
      黒田茂、中垣俊之
    • Publisher
      日本評論社
    • Related Report
      2014 Annual Research Report
  • [Book] 粘菌 偉大なる単細胞が世界を救う2014

    • Author(s)
      中垣俊之
    • Total Pages
      198
    • Publisher
      文藝春秋社
    • Related Report
      2014 Annual Research Report
  • [Remarks] 数物科学で読み解く生物行動学

    • URL

      http://pel.es.hokudai.ac.jp/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 数物科学で読み解く生物行動学

    • URL

      http://altair.sci.hokudai.ac.jp/polymer/laboratory/lab-c/cooperation-08.html

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2014-09-09   Modified: 2018-03-22  

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