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Development of Algorithm for Enumerating Organic Molecules

Research Project

Project/Area Number 26330265
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Intelligent informatics
Research InstitutionKwansei Gakuin University

Principal Investigator

Inokuchi Akihiro  関西学院大学, 理工学部, 准教授 (70452456)

Co-Investigator(Kenkyū-buntansha) 岡田 孝  関西学院大学, 理工学部, 理工学部研究員 (00103135)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywordsデータマイニング / 列挙アルゴリズム / 有機化合物 / 医薬品
Outline of Final Research Achievements

A graph is one of the most natural data structures for representing structured data. For instance, a chemical compound is represented as a graph, where each vertex corresponds to an atom, each edge corresponds to a bond between two atoms therein, and the label of the vertex corresponds to an atom type. Recently, the topic of graph mining has become of great interest because knowledge discovery from structured data can be applied to various real-world datasets.
In this work, we proposed the following three algorithms by representing chemical molecules as labeled graphs: (1) an algorithm for enumerating a complete set of labeled graphs efficiently each of which output in 13 microseconds in average, (2) an algorithm for searching labeled graphs of which q is a supergraph, when given a set of labeled graphs G and a query graph q, and (3) an algorithm for learning the relationship between labeled graphs and their properties and for forecasting a property of a new labeled graph.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (18 results)

All 2017 2016 2015 2014

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (15 results) (of which Int'l Joint Research: 4 results)

  • [Journal Article] Experimental Evaluation of Graph Classification with Hadamard Code Graph Kernels2017

    • Author(s)
      Tetsuya Kataoka, Akihiro Inokuchi
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 10163 Pages: 1-19

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 滑らかな変化を検出するためのグラフ系列クラスタリング2016

    • Author(s)
      長村 佳歩, 奥井 颯平, 猪口 明博
    • Journal Title

      情報処理学会論文誌

      Volume: 58 Pages: 278-287

    • NAID

      170000131179

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] アダマール符号を用いたグラフカーネルによるグラフクラス分類2016

    • Author(s)
      片岡哲也,猪口明博
    • Journal Title

      情報処理学会論文誌

      Volume: 57 Pages: 2122-2130

    • NAID

      170000131062

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Presentation] Mapping Distance Graph Kernels using Bipartite Matching2017

    • Author(s)
      Tetsuya Kataoka ; Eimi Shiotsuki and Akihiro Inokuchi
    • Organizer
      the 6th International Conference on Pattern Recognition Applications and Methods
    • Place of Presentation
      Porto, Portugal
    • Year and Date
      2017-02-24
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Detecting Smooth Cluster Changes in Evolving Graphs2016

    • Author(s)
      Sohei Okui, Kaho Osamura, and Akihiro Inokuchi
    • Organizer
      15th IEEE International Conference on Machine Learning and Applications
    • Place of Presentation
      Anaheim, California, USA
    • Year and Date
      2016-12-18
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 系列データのパターン分割における過小時区間の回避2016

    • Author(s)
      辻健太, 猪口明博
    • Organizer
      2016年電子情報通信学会総合大会 (IEICE2016)
    • Place of Presentation
      九州大学伊都キャンパス(福岡県・福岡市)
    • Year and Date
      2016-03-15
    • Related Report
      2015 Research-status Report
  • [Presentation] Allenの時区間関係を条件とする時区間データの効率的な結合演算手法2016

    • Author(s)
      山下夏奈,猪口明博
    • Organizer
      DEIM2016 第8回データ工学と情報マネジメントに関するフォーラム(第14回日本データベース学会年次大会)
    • Place of Presentation
      ヒルトン福岡シーホーク(福岡県・福岡市)
    • Year and Date
      2016-03-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Star編集距離を用いたグラフ分類学習2016

    • Author(s)
      塩月英美,猪口明博
    • Organizer
      DEIM2016 第8回データ工学と情報マネジメントに関するフォーラム(第14回日本データベース学会年次大会)
    • Place of Presentation
      ヒルトン福岡シーホーク(福岡県・福岡市)
    • Year and Date
      2016-02-29
    • Related Report
      2015 Research-status Report
  • [Presentation] Hadamard Code Graph Kernels for Classifying Graphs2016

    • Author(s)
      Tetsuya Kataoka and Akihiro Inokuchi
    • Organizer
      The International Conference on Pattern Recognition Applications and Methods (ICPRAM2016)
    • Place of Presentation
      Rome (Italy)
    • Year and Date
      2016-02-24
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Development of PharCompo Database and Adverse Effect Analysis by ATC Codes2015

    • Author(s)
      Norihito Ohmori, Hiroshi Horikawa Takashi Okada, Yasushi Hinomura
    • Organizer
      The 43rd Symposium on Structural Activity Relationship 2015 and The 10th Japan-CHina Joint Symposium on Drug Discovery and Development
    • Place of Presentation
      Niigata Nippo Mediaship, Nippo Hall Niigata (新潟県・新潟市)
    • Year and Date
      2015-09-28
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 分類樹説明変数による副作用自発報告データベースのマイニング2015

    • Author(s)
      岡田孝, 大森紀人, 堀川袷志, 猪口明博
    • Organizer
      第105回人工知能学会知識ベースシステム研究会
    • Place of Presentation
      関西学院大学大阪梅田キャンパス(大阪府・大阪市)
    • Year and Date
      2015-08-07
    • Related Report
      2015 Research-status Report
  • [Presentation] Fuzzy c-means を用いたグラフ系列のクラスタリング2015

    • Author(s)
      長村佳歩, 猪口明博
    • Organizer
      第105回人工知能学会知識ベースシステム研究会
    • Place of Presentation
      関西学院大学大阪梅田キャンパス(大阪府・大阪市)
    • Year and Date
      2015-08-07
    • Related Report
      2015 Research-status Report
  • [Presentation] グラフコーディングを用いたスーパーグラフ検索の効率化2015

    • Author(s)
      猪口明博, 磯村哲
    • Organizer
      第105回人工知能学会知識ベースシステム研究会
    • Place of Presentation
      関西学院大学大阪梅田キャンパス(大阪府・大阪市)
    • Year and Date
      2015-08-07
    • Related Report
      2015 Research-status Report
  • [Presentation] 有効化学成分と医薬品リンクデータベースPharmCompoの構築――副作用の解析を目指して2015

    • Author(s)
      大森 紀人, 堀川袷志, 岡田孝, 日野村 靖
    • Organizer
      第42回日本毒性学会学術年会
    • Place of Presentation
      石川県立音楽堂(石川県・金沢市)
    • Year and Date
      2015-07-01
    • Related Report
      2015 Research-status Report
  • [Presentation] アダマール符号を用いたグラフの類似度計算およびその性能評価2015

    • Author(s)
      片岡哲也, 猪口明博
    • Organizer
      第104回知識ベースシステム研究会 (SIG-KBS), 社会システムと情報技術研究ウィーク
    • Place of Presentation
      ルスツリゾートホテル, 北海道
    • Year and Date
      2015-03-01
    • Related Report
      2014 Research-status Report
  • [Presentation] 索引語の共起と出現頻度に着目した文書の索引付け2015

    • Author(s)
      奥井颯平, 猪口明博
    • Organizer
      第104回知識ベースシステム研究会 (SIG-KBS), 社会システムと情報技術研究ウィーク
    • Place of Presentation
      ルスツリゾートホテル, 北海道
    • Year and Date
      2015-03-01
    • Related Report
      2014 Research-status Report
  • [Presentation] 医薬品統合データベースの作成とATCコードによる横紋筋融解症の解析2014

    • Author(s)
      大森紀人, 堀川袷志, 岡田孝
    • Organizer
      第42回構造活性相関シンポジウム
    • Place of Presentation
      くまもと森都心プラザ, 熊本
    • Year and Date
      2014-11-13 – 2014-11-14
    • Related Report
      2014 Research-status Report
  • [Presentation] 横紋筋融解副作用への化学構造の影響2014

    • Author(s)
      大森紀人, 堀川袷志, 岡田孝
    • Organizer
      第41回日本毒性学会学術年会
    • Place of Presentation
      神戸コンベンションセンター, 神戸
    • Year and Date
      2014-07-03
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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