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Development of novel techniques for single-molecule fluorescence imaging of various biomolecules

Research Project

Project/Area Number 26390035
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Nanobioscience
Research InstitutionWaseda University

Principal Investigator

TANII Takashi  早稲田大学, 理工学術院, 教授 (20339708)

Co-Investigator(Kenkyū-buntansha) 山本 英明  東北大学, 学際科学フロンティア研究所, 助教 (10552036)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords1分子イメージング / 蛍光観察 / FRET / ナノ構造 / 1分子イメージング / FRET / ZMW / ZMW / 一分子イメージング
Outline of Final Research Achievements

In order to enhance the ability of single-molecule fluorescence imaging (SMFI) that enables to detect binding and dissociation events of bio-molecules in real time using zero-mode waveguides (ZMWs), we propose a novel technique to combine fluorescence resonance energy transfer (FRET) and SMFI with ZMWs, and proved experimentally that the proposed method is feasible. We also tried to extend the ability of this technique by demonstrating SMFI of individual DNA aptamers for sensing application, SMFI of DNA strand scission by endonuclease, and in-situ cell patterning.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (48 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (3 results) Journal Article (10 results) (of which Peer Reviewed: 9 results,  Open Access: 5 results,  Acknowledgement Compliant: 6 results) Presentation (33 results) (of which Int'l Joint Research: 12 results,  Invited: 3 results) Remarks (2 results)

  • [Int'l Joint Research] CNR(イタリア)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Consiglio Nazionale delle Ricerche (CNR)(Italy)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] Ulm University/The University of Stuttgart/Maxplanck Institute(Germany)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Quantitative Evaluation of Cancer Cell Adhesion to Self-Assembled Monolayer-Patterned Substrates by Reflection Interference Contrast Microscopy2016

    • Author(s)
      4)T. Matsuzaki, K. Ito, K. Masuda, E. Kakinuma, R. Sakamoto, K. Iketaki, H. Yamamoto, M. Suganuma, N. Kobayashi, S. Nakabayashi, T. Tanii, H. Y. Yoshikawa
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 120 Issue: 7 Pages: 1221-1227

    • DOI

      10.1021/acs.jpcb.5b11870

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Quantitative comparison of cancer and normal cell adhesion using organosilane monolayer templates: An experimental study on the anti-adhesion effect of green-tea catechins2016

    • Author(s)
      Rumi Sakamoto, Eisuke Kakinuma, Kentaro Masuda, Yuko Takeuchi, Kosaku Ito, Kentaro Iketaki, Takahisa Matsuzaki, Seiichiro Nakabayashi, Hiroshi Y. Yoshikawa, Hideaki Yamamoto, Yuko Sato, Takashi Tanii
    • Journal Title

      In Vitro Cellular & Developmental Biology -Animal

      Volume: 52 Issue: 8 Pages: 799-805

    • DOI

      10.1007/s11626-016-0049-6

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 光触媒作用を用いた液中表面改質による培養神経細胞の操作2016

    • Author(s)
      山本英明, 平野愛弓, 谷井孝至, 庭野道夫
    • Journal Title

      表面科学 37, 224-229 (2016)

      Volume: 37 Pages: 224-229

    • NAID

      130005154319

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Size-dependent regulation of synchronized activity in living neuronal networks2016

    • Author(s)
      Hideaki Yamamoto, Shigeru Kubota, Yudai Chida, Mayu Morita, Satoshi Moriya, Hisanao Akima, Shigeo Sato, Ayumi Hirano-Iwata, Takashi Tanii, and Michio Niwano
    • Journal Title

      Physicai Review E

      Volume: 94 Issue: 1 Pages: 012407-012407

    • DOI

      10.1103/physreve.94.012407

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Live-cell, label-free identification of GABAergic and non-GABAergic neurons in primary cortical cultures using micropatterned surface2016

    • Author(s)
      Sho Kono, Hideaki Yamamoto, Takatoshi Kushida, Ayumi Hirano-Iwata, Michio Niwano and Takashi Tanii
    • Journal Title

      PLOS ONE

      Volume: 11 Issue: 8 Pages: e0160987-e0160987

    • DOI

      10.1371/journal.pone.0160987

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Surface Modification of Cell Scaffold in Aqueous Solution Using TiO<sub>2 </sub>Photocatalysis and Linker Protein L2 for Patterning Primary Neurons<i><sup> </sup></i>2015

    • Author(s)
      K.Sekine, H.Yamamoto, S.Kono, T.Ikeda, A.Kuroda, T.Tanii
    • Journal Title

      e-Journal of Surface Science and Nanotechnology

      Volume: 13 Issue: 0 Pages: 213-218

    • DOI

      10.1380/ejssnt.2015.213

    • NAID

      130005068495

    • ISSN
      1348-0391
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Photopatterning Proteins and Cells in Aqueous Environment using TiO2 Photocatalysis2015

    • Author(s)
      H.Yamamoto, T.Demura, K.Sekine, S.Kono, M.Niwano, A.Hirano-Iwata, T.Tanii
    • Journal Title

      Journal of Visualized Experiments

      Volume: 104 Issue: 104

    • DOI

      10.3791/53045

    • Related Report
      2015 Research-status Report 2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Neuraminidase-dependent Degradation of Polysialic Acid Is Required for the Lamination of Newly Generated Neurons2015

    • Author(s)
      M.Sajo, H.Sugiyama, H.Yamamoto, T.Tanii, N.Matsuki, Y.Ikegaya, R.Koyama
    • Journal Title

      PLOS ONE

      Volume: 11 Issue: 1 Pages: e0146398-e0146398

    • DOI

      10.1371/journal.pone.0146398

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Surface modification of cell scaffold in aqueous solution using TiO2 photocatalysis and linker protein L2 for patterning primary neurons2015

    • Author(s)
      K.Sekine, H.Yamamoto, S.Kono, T.Ikeda, A.Kuroda, T.Tanii
    • Journal Title

      e-Journal of Surface Science and Nanotechnology

      Volume: in press

    • NAID

      130005068495

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] In situ modification of cell-culture scaffolds by photocatalytic decomposition of organosilane monolayers2014

    • Author(s)
      Yamamoto H, Demura T, Morita M, Kono S, Sekine K, Shinada T, Nakamura S, Tanii T
    • Journal Title

      Biofabrication

      Volume: 6 Issue: 3 Pages: 035021-035021

    • DOI

      10.1088/1758-5082/6/3/035021

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] マイクロ加工表面を用いた培養神経回路のモジュール性制御2017

    • Author(s)
      井手 克哉, 山本 英明, 松村 亮佑, 谷井 孝至, 吉信 達夫, 庭野 道夫, 平野 愛弓
    • Organizer
      第64回応用物理学会春季学術講演会
    • Place of Presentation
      パシフィコ横浜,横浜
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] モジュール構造型培養神経回路の計算論的モデリング2017

    • Author(s)
      山本 英明, 守谷 哲, 井手 克哉, 松村 亮佑, 秋間 学尚, 久保田 繁, 谷井 孝至, 佐藤 茂雄, 庭野 道 夫, 平野 愛弓
    • Organizer
      第64回応用物理学会春季学術講演会
    • Place of Presentation
      パシフィコ横浜,横浜
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] 可視光応答酸化チタン薄膜の光触媒能を利用した細胞の液中パターニング2017

    • Author(s)
      古澤 昂平, 河野 翔, 藤城 翔偉, 山本 英明, 谷 井 孝至
    • Organizer
      第64回応用物理学会春季学術講演会
    • Place of Presentation
      パシフィコ横浜,横浜
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] A computational study on spontaneous activity of a single neuron2017

    • Author(s)
      K. Hattori, S. Kono, H. Yamamoto, T. Tanii
    • Organizer
      The 5th RIEC International Symposium on Brain Functions and Brain Computer
    • Place of Presentation
      東北大学,仙台
    • Year and Date
      2017-02-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] In situ modification of cell-culture scaffolds by photocatalysis of visible-light-responsible TiO2 film2017

    • Author(s)
      S. Kono, K. Furusawa, S. Fujishiro, H. Yamamoto, T. Tanii
    • Organizer
      The 5th RIEC International Symposium on Brain Functions and Brain Computer
    • Place of Presentation
      東北大学,仙台
    • Year and Date
      2017-02-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Controlling modularity of cortical neuronal networks using micropatterned surfaces2017

    • Author(s)
      K. Ide, H. Yamamoto, R. Matsumura, T. Tanii, M. Niwano, A. Hirano-Iwata
    • Organizer
      The 5th RIEC International Symposium on Brain Functions and Brain Computer
    • Place of Presentation
      東北大学,仙台
    • Year and Date
      2017-02-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synchronization in neuronal networks with modular geometry2017

    • Author(s)
      H. Yamamoto, T. Tanii, S. Kubota, S. Sato, M. Niwano, A. Hirano-Iwata
    • Organizer
      The 5th RIEC International Symposium on Brain Functions and Brain Computer
    • Place of Presentation
      東北大学,仙台
    • Year and Date
      2017-02-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structure-function Relationships in Living Neuronal Networks: a Surface Engineering Approach2016

    • Author(s)
      H. Yamamoto, A. Hirano-Iwata, T. Tanii, M. Niwano
    • Organizer
      10th Anniversary International Symposium on Nanomedicine (ISNM2016)
    • Place of Presentation
      産業技術総合研究所,つくば
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 有機単分子膜パターンにより細胞間接続を制御した2細胞神経回路の構築と解析2016

    • Author(s)
      河野 翔、藤森 壮也、山本 英明、谷井 孝至
    • Organizer
      第77回応用物理学会秋季学術講演会
    • Place of Presentation
      朱鷺メッセ,新潟
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] Spontaneous activity of cultured neuronal networks with defined numbers of neurons: a computational study2016

    • Author(s)
      H. Yamamoto, Y. Chida, A. Hirano-Iwata, T. Tanii, S. Kubota, M. Niwano
    • Organizer
      10th FENS Forum for Neuroscience
    • Place of Presentation
      Copenhagen, Denmark
    • Year and Date
      2016-07-05
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] レーザ走査光触媒リソグラフィを活用した液中細胞パターニング2016

    • Author(s)
      藤城翔偉、関根浩平、河野翔、池田丈、黒田章夫、山本英明、谷井孝至
    • Organizer
      第63回応用物理学会春季学術講演会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-21
    • Related Report
      2015 Research-status Report
  • [Presentation] マイクロパターン表面を用いた培養神経回路の構造-機能制御2016

    • Author(s)
      山本英明,石原広識,河野翔,千田雄大,松村亮佑,平野愛弓,久保田繁,谷井孝至,庭野道夫
    • Organizer
      第63回応用物理学会春季学術講演会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-19
    • Related Report
      2015 Research-status Report
  • [Presentation] Spontaneous activity patterns of small neuronal ensemble2016

    • Author(s)
      H.Yamamoto, A.Hirano-Iwata, T.Tanii, S.Kubota, M.Niwano
    • Organizer
      The 4th RIEC International Symposium on Brain Functions and Brain Computer
    • Place of Presentation
      Miyagi
    • Year and Date
      2016-02-23
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Live-cell identification of excitatory-inhibitory cell types of cultured cortical neurons focusing on specific axon growth length on micropatterns2016

    • Author(s)
      S.Kono, T.Kushida, H.Yamamoto, T.Tanii
    • Organizer
      The 4th RIEC International Symposium on Brain Functions and Brain Computer
    • Place of Presentation
      Miyagi
    • Year and Date
      2016-02-23
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 表面マイクロ改質技術を活用した培養神経細胞/回路の構造制御2015

    • Author(s)
      山本英明、平野愛弓、谷井孝至、庭野道夫
    • Organizer
      第35回表面科学学術講演会
    • Place of Presentation
      茨城
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Laser-Scanning Photocatalytic Lithography of Organosilane Monolayers for Fabrication of Artificial Neuronal Circuits2015

    • Author(s)
      K.Sekine, H.Yamamoto, S.Kono, S.Fujishiro, T.Ikeda, A.Kuroda, T.Tanii
    • Organizer
      28th International Microprocesses and Nanotechnology Conference
    • Place of Presentation
      Toyama
    • Year and Date
      2015-11-13
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Manipulating Neuronal Cells in situ by TiO2-Assisted Photocatalytic Lithography2015

    • Author(s)
      H.Yamamoto, A.Hirano-Iwata, T.Tanii, M.Niwano
    • Organizer
      9th International Symposium on Nanomedicine
    • Place of Presentation
      Mie
    • Year and Date
      2015-11-12
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] マイクロパターン上での培養による興奮性-抑制性神経細胞の非標識判別II2015

    • Author(s)
      河野翔, 櫛田昂歳, 山本英明, 谷井孝至
    • Organizer
      第76回応用物理学会秋季学術講演会
    • Place of Presentation
      愛知
    • Year and Date
      2015-09-15
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 培養神経回路の自発発火パターンの素子数依存性に関する理論的考察2015

    • Author(s)
      山本英明,千田雄大,平野愛弓,谷井孝至,久保田 繁,庭野道夫
    • Organizer
      第38回日本神経科学大会
    • Place of Presentation
      兵庫
    • Year and Date
      2015-07-28
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Live-cell, label free identification of excitatory-inhibitory neurons on micropatterned surfaces2015

    • Author(s)
      S.Kono, T.Kushida, H.Yamamoto, T.Tanii
    • Organizer
      Eighth International Conference on Molecular Electronics and Bioelectronics
    • Place of Presentation
      Tokyo
    • Year and Date
      2015-06-22
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] モレキュラービーコンを用いた1分子FRET計測系の構築2015

    • Author(s)
      和泉 聡志,大久保 幸太朗,櫛田 昂歳,山本 英明,谷井 孝至
    • Organizer
      第62回応用物理学会 春季学術講演会
    • Place of Presentation
      東海大学湘南キャンパス
    • Year and Date
      2015-03-14
    • Related Report
      2014 Research-status Report
  • [Presentation] 有機シラン単分子膜パターン基板への接着差を用いた癌細胞の選別2015

    • Author(s)
      竹内祐子, 柿沼瑛介, 坂本留美, 山本英明, 佐藤裕子, 谷井孝至
    • Organizer
      第62回応用物理学会 春季学術講演会
    • Place of Presentation
      東海大学湘南キャンパス
    • Year and Date
      2015-03-12
    • Related Report
      2014 Research-status Report
  • [Presentation] マイクロパターン神経細胞回路の活動様式に関する理論的考察2015

    • Author(s)
      千田雄大, 山本英明, 平野愛弓, 石原広識, 藤森壮也, 谷井孝至, 久保田繁, 庭野道夫
    • Organizer
      第62回応用物理学会春季学術講演会
    • Place of Presentation
      東海大学湘南キャンパス
    • Year and Date
      2015-03-12
    • Related Report
      2014 Research-status Report
  • [Presentation] Computational modeling of the spontaneous activity in micropatterned neuronal networks2015

    • Author(s)
      Y. Chida, H. Yamamoto, A. Hirano-Iwata, K. Ishihara, S. Fujimori, T.Tanii, S. Kubota, M. Niwano
    • Organizer
      3rd RIEC International Symposium on Brain Functions and Brain Computer
    • Place of Presentation
      Tohoku Univ.
    • Year and Date
      2015-02-18
    • Related Report
      2014 Research-status Report
  • [Presentation] In Situ Modification of Cell-Culture Scaffolds by Photocatalytic Decomposition of Organosilane Monolayers on Titanium Dioxide2014

    • Author(s)
      Sho Kono, Hideaki Yamamoto, Kohei Sekine, Takashi Tanii
    • Organizer
      The 5th International Symposium on Advanced Materials Development and Integration of Novel Structural Metallic and Inorganic Materials(2014)
    • Place of Presentation
      東京医科歯科大学
    • Year and Date
      2014-11-19
    • Related Report
      2014 Research-status Report
  • [Presentation] Adhesibility-Dependent Cell Sorting Using Organosilane Monolayer Template and Green-Tea Catechin2014

    • Author(s)
      Rumi Sakamoto, Eisuke Kakinuma, Yuko Takeuchi, Hideaki Yamamoto, Takashi Tani
    • Organizer
      The 5th International Symposium on Advanced Materials Development and Integration of Novel Structured Matellic and Inorganic Materials (AMDI-5) Conjunction with 6th IBB Frontier Symposium
    • Place of Presentation
      東京医科歯科大学
    • Year and Date
      2014-11-19
    • Related Report
      2014 Research-status Report
  • [Presentation] Optimization of micropattern geometry for long-term culture of isolated neurons and identification of excitatory-inhibitory cell types2014

    • Author(s)
      Hideaki Yamamoto, Sho Kono, Takatoshi Kushida, Ayumi Hirano-Iwata, Michio Niwano, Takashi Tanii
    • Organizer
      Neuroscience 2014
    • Place of Presentation
      the Walter E. Washington Convention Center
    • Year and Date
      2014-11-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Fabrication of micropatterned substrate for live-cell, label free identification of excitatory-inhibitory neurons2014

    • Author(s)
      Sho Kono, Takatoshi Kushida, Hideaki Yamamoto, Takashi Tanii
    • Organizer
      The 7th International Symposium on Surface Science
    • Place of Presentation
      くにびきメッセ (島根県)
    • Year and Date
      2014-11-04
    • Related Report
      2014 Research-status Report
  • [Presentation] Surface modification in aqueous solution using TiO2 photocatalysis and a linker protain L2 for patterning primary neurons2014

    • Author(s)
      Kohei Sekine, Hideaki Yamamoto, Sho Kono, Takeshi Ikeda, Akio Kuroda, Takashi Tanii
    • Organizer
      The 7th International Symposium on Surface Science
    • Place of Presentation
      くにびきメッセ (島根県)
    • Year and Date
      2014-11-03
    • Related Report
      2014 Research-status Report
  • [Presentation] 有機シラン単分子膜パターン基板を用いたモジュール構造型培養神経回路の構築2014

    • Author(s)
      石原広識, 藤森壮也, 山本英明, 谷井孝至
    • Organizer
      第75回応用物理学会 秋季学術講演会
    • Place of Presentation
      北海道大学
    • Year and Date
      2014-09-19
    • Related Report
      2014 Research-status Report
  • [Presentation] ナノスリット導波路を用いた細胞内生体分子のリアルタイム蛍光イメージング2014

    • Author(s)
      大久保幸太朗, 櫛田昂歳, 和泉聡志, 山本英明, 谷井孝至
    • Organizer
      第75回応用物理学会 秋季学術講演会
    • Place of Presentation
      北海道大学
    • Year and Date
      2014-09-18
    • Related Report
      2014 Research-status Report
  • [Presentation] マイクロ加工基板を用いた興奮性/抑制性神経細胞判別法の開発2014

    • Author(s)
      河野翔, 櫛田昂歳, 山本英明, 谷井孝至
    • Organizer
      第37回日本神経科学大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-09-13
    • Related Report
      2014 Research-status Report
  • [Presentation] Quantitative evaluation of cancer cell adhesion by functional substrate and optical interferometric technique2014

    • Author(s)
      Hiroshi Yoshikawa, Masami Suganuma, Takashi Tanii
    • Organizer
      The 12th Japan-Korea Joint Symposium on Cancer and Aging Research
    • Place of Presentation
      Saitama cancer center
    • Year and Date
      2014-06-19 – 2014-06-21
    • Related Report
      2014 Research-status Report
    • Invited
  • [Remarks] Photopatterning Proteins and Cells in Aqueous...

    • URL

      http://www.jove.com/video/53045/photopatterning-proteins-cells-aqueous-environment-using-tio2

    • Related Report
      2015 Research-status Report
  • [Remarks] Molecular Nanoengineering Research

    • URL

      http://www.tanii.nano.waseda.ac.jp

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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