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First-principles simulations of chemical reactions using meta-dynamics scheme

Research Project

Project/Area Number 26410014
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical chemistry
Research InstitutionOsaka University

Principal Investigator

Morikawa Yoshitada  大阪大学, 工学研究科, 教授 (80358184)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords密度汎関数理論 / 分子動力学法 / 自由エネルギー / メタ・ダイナミクス法 / 第一原理分子動力学 / 鈴木-宮浦クロスカップリング / 酸化的付加 / トランスメタル化 / リガンド・フリー / 塩化ベンゼン / 臭化ベンゼン / 第一原理分子動力学法 / 密度汎関数法 / 化学反応 / メタ・ダイナミクス / 触媒 / 反応 / 燃料電池 / Si / エッチング
Outline of Final Research Achievements

We have implemented meta-dynamics scheme into our home made first-principles density functional theory code "Simulation Tool for Atom Technology (STATE-Seri)" and investigated the dissociative adsorption process of HF molecule at the HF solution/Si(111) interface. At the beginning, we assumed that HF molecule is dissociatively adsorbed and F anion is bonded to the first-layer Si, while the H of HF molecule is bonded to the second-layer Si, cleaving the Si-Si back-bond. However, by using the meta-dynamics method, we obtained a different reaction profile. In the new process, HF molecule is dissociated and F anion is bonded to the first-layer Si, forming a peta-coordinated Si, while H of HF molecule is dissolved into solution phase. Then in the second step, H of OH group, which is terminating the first-layer Si, is moved to form the Si-H bond with the second-layer Si, breaking the Si-Si back-bond. The new process should be energetically more favorable than the previous process.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (38 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (2 results) Journal Article (8 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 8 results,  Open Access: 7 results,  Acknowledgement Compliant: 3 results) Presentation (26 results) (of which Int'l Joint Research: 6 results,  Invited: 11 results) Remarks (2 results)

  • [Int'l Joint Research] University of Wisconsin-Madison(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University of Bordeaux(France)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] First-Principles Molecular Dynamics Analysis of Ligand-Free Suzuki-Miyaura Cross Coupling in Water Solvent: Oxidative Addition Step2017

    • Author(s)
      T. Hirakawa, Y. Uramoto, D. Mimura, A. Takeda, S. Yanagisawa, T. Ikeda, K. Inagaki, and Y. Morikawa
    • Journal Title

      J. Phys. Chem. B,

      Volume: 121 Issue: 1 Pages: 164-173

    • DOI

      10.1021/acs.jpcb.6b08644

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Ab-initio moleculer dynamics of solvation effects on reactiveity at electrified interfaces2016

    • Author(s)
      J.A. Herron, *Y. Morikawa, and *M. Mavrikakis
    • Journal Title

      Proc. Natl. Acad. Sci. U. S. A.,

      Volume: 113 Issue: 34

    • DOI

      10.1073/pnas.1604590113

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Mechanism for enhanced single-crystal GaN growth in the C-assisted Na-flux method2016

    • Author(s)
      T. Kawamura, H. Imabayashi, M. Maruyama, M. Imade, M. Yoshimura, Y. Mori, and Y. Morikawa
    • Journal Title

      Applied Physics Express

      Volume: 9 Issue: 1 Pages: 015601-015601

    • DOI

      10.7567/apex.9.015601

    • NAID

      210000137759

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] First-principles investigation of the GaN growth process in carbon-added Na-flux method2015

    • Author(s)
      T. Kawamura, H. Imabayashi, M. Maruyama, M. Imade, M. Yoshimura, Y. Mori, and Y. Morikawa
    • Journal Title

      Physica Status Solidi B

      Volume: 252 Issue: 5 Pages: 1084-1088

    • DOI

      10.1002/pssb.201451546

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Study on the mechanism of platinum-assisted hydrofluoric acid etching of SiC using density functional theory calculations2015

    • Author(s)
      .V. Bui, A. Isohashi, H. Kizaki, Y. Sano, K. Yamauchi, Y. Morikawa, and K. Inagaki
    • Journal Title

      Appl. Phys. Lett.

      Volume: 107 Issue: 20

    • DOI

      10.1063/1.4935832

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Electronic structure of the 4x4 silicene monolayer on semi-infinite Ag(111)2015

    • Author(s)
      H. Ishida, Y. Hamamoto, Y. Morikawa, E. Minamitani, R. Arafune, N. Takagi
    • Journal Title

      New Journal of Physics

      Volume: 17 Issue: 1 Pages: 015013-015013

    • DOI

      10.1088/1367-2630/17/1/015013

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Dissociative adsorption of CO2 on flat, stepped, and kinked Cu surfaces2014

    • Author(s)
      F. Muttaqien, Y. Hamamoto, K. Inagaki, and Y. Morikawa
    • Journal Title

      The Journal of Chemical Physics

      Volume: 141 Issue: 3

    • DOI

      10.1063/1.4887362

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Theoretical investigation of the band structure of picene single crystals within the GW approximation2014

    • Author(s)
      S. Yanagisawa, Y. Morikawa, and A. Schindlmayr
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 53 Issue: 5S1 Pages: 05FY02-05FY02

    • DOI

      10.7567/jjap.53.05fy02

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] The Effect of pH on Optical Intensities of a Ruthenium(II) Phenanthroline-thiourea complex: An Experimental and Theoretical Investigation2017

    • Author(s)
      Siew San Tan, Mohammad B. Kassim, Kouji Inagaki, and Yoshitada Morikawa
    • Organizer
      Symposium on Surface Science & Nanotechnology -25th Anniversary of SSSJ Kansai-" (SSSN-Kansai)
    • Place of Presentation
      京都市国際交流協会
    • Year and Date
      2017-01-24
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] First-principles Simulations of Catalytic Reactions in Crystal Growthand EtchingProcesses at Semiconductor Interfaces2016

    • Author(s)
      Y. Morikawa
    • Organizer
      12th International Conference of Computational Methods in Sciencesand Engineering (ICCMSE 2016)
    • Place of Presentation
      Athens (Greece)
    • Year and Date
      2016-03-17
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] First-principles Study on Catalytic Reactions in Crystal Growth and Etching Processes at Semiconductor Surfaces2015

    • Author(s)
      Y. Morikawa
    • Organizer
      Synposium & Workshop Nanotechnology 2015
    • Place of Presentation
      Bandung (Indonesia)
    • Year and Date
      2015-11-09
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Catalytic Reactions in Crystal Growth and Etching Processes at Semiconductor Surfaces: First-principles Molecular Dynamics Study2015

    • Author(s)
      Y. Morikawa
    • Organizer
      First International Symposium of Institute for Catalysis --Global Collaboration in Catalysis Science toward Sustainable Society
    • Place of Presentation
      北海道大学 (北海道・札幌市)
    • Year and Date
      2015-10-13
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 水とフッ素水溶液の第一原理分子動力学計算における原子構造の汎関数依存性2015

    • Author(s)
      金森仁美、和田一真、濵本雄治、木﨑栄年、稲垣耕司、森川良忠
    • Organizer
      日本物理学会2015年秋季大会
    • Place of Presentation
      関西大学 (大阪府・吹田市)
    • Year and Date
      2015-09-17
    • Related Report
      2015 Research-status Report
  • [Presentation] 水溶媒を用いたリガンドフリーな鈴木反応の反応機構解析2015

    • Author(s)
      平川晧朗、浦元優太、武田篤哉、三村大輔、池田隆司、柳澤将、稲垣耕司、森川良忠
    • Organizer
      第9回分子科学討論会
    • Place of Presentation
      東京工業大学 (東京都・目黒区)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Research-status Report
  • [Presentation] 第一原理シミュレーションによる不均一触媒反応過程の研究2015

    • Author(s)
      森川良忠
    • Organizer
      シンポジウム「化学反応経路探索のニューフロンティア2015」
    • Place of Presentation
      総合区民会館きゅりあん (東京都・品川区)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Mechanism of Ligand-free Suzuki-Miyaura Cross Coupling in a Water Solven2015

    • Author(s)
      T. Hirakawa, Y. Uramoto, T. Ikeda, S. Yanagisawa, K. Inagaki, and Y. Morikawa
    • Organizer
      16th International Conference on Density Functional Theory and its Applications
    • Place of Presentation
      Debrecen (Hungary)
    • Year and Date
      2015-08-31
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] First-principles simulations of interface reactions2015

    • Author(s)
      Y. Morikawa
    • Organizer
      The 6th Asian Physics Symposium
    • Place of Presentation
      Bandung (Indonesia)
    • Year and Date
      2015-08-19
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 第一原理シミュレーションによる不均一触媒の研究2015

    • Author(s)
      森川良忠
    • Organizer
      物性研究所短期研究会 機能物性融合科学シリーズ(3) 「反応と輸送」
    • Place of Presentation
      東京大学物性研究所 (千葉県・柏市)
    • Year and Date
      2015-06-24
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 第一原理Metadynamics法を用いたフッ酸/Si(111)界面でのHFの解離吸着反応の経路探索2015

    • Author(s)
      金森仁美、森川良忠、稲垣耕司、木﨑英年、濱本雄治
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学理工学部船橋キャンパス (千葉県船橋市)
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Cu(111)面におけるギ酸分解反応の第一原理計算2015

    • Author(s)
      鳥井 史郎、Fahdzi Muttaqien、濱本 雄治、木崎 栄年、稲垣 耕司、森川 良忠
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学理工学部船橋キャンパス (千葉県船橋市)
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] 第一原理電子状態計算による局所構造とその電子的・化学的性質の解明2015

    • Author(s)
      森川良忠
    • Organizer
      日本物理学会第70回年次大会
    • Place of Presentation
      早稲田大学 (東京都新宿区)
    • Year and Date
      2015-03-22
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 固体表面での触媒反応の第一原理シミュレーション2015

    • Author(s)
      森川良忠
    • Organizer
      筑波大学数理物質融合科学センター(CiRfSE)ワークショップ
    • Place of Presentation
      筑波大学 (茨城県つくば市)
    • Year and Date
      2015-03-12 – 2015-03-13
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 第一原理シミュレーションと統計力学的手法を組み合わせた触媒反応解析2015

    • Author(s)
      森川良忠
    • Organizer
      スーパーコンピュータワークショップ2015
    • Place of Presentation
      分子科学研究所 (愛知県岡崎市)
    • Year and Date
      2015-01-29 – 2015-01-30
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] First-principles Investigation of Self-regenerating Mechanism of LaFe1-xPdxO32014

    • Author(s)
      Y. Morikawa, H. Kizaki, S. Yanagisawa, I. Hamada, K. Inagaki, and Z.-X. Tian
    • Organizer
      Symposium & Workshop Nanotechnology & Biotechnology, Computational Material Design (CMD) & Bio-Informatika
    • Place of Presentation
      ITB Bandung, Indonesia
    • Year and Date
      2014-11-12 – 2014-11-14
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] First-principlesSimulations of an H2O Dissociation and Hydroxyl Adsorption in water-bilayer on Pt(322) surface2014

    • Author(s)
      H. Kizaki, I. Hamada and Y. Morikawa
    • Organizer
      The 7th International Symposium on Surface Science (ISSS-7)
    • Place of Presentation
      Matsue (島根県松江市)
    • Year and Date
      2014-11-03 – 2014-11-06
    • Related Report
      2014 Research-status Report
  • [Presentation] Oxidative addition Reactions of Suzuki-Miyaura Cross Coupling with Ligand-free Pd in aqueous solution2014

    • Author(s)
      T. Hirakawa, Y. Uramoto, A. Takeda, D. Mimura, T. Ikeda, S. Yanagisawa, K. Inagaki and Y. Morikawa
    • Organizer
      The 7th International Symposium on Surface Science (ISSS-7)
    • Place of Presentation
      Matsue (島根県松江市)
    • Year and Date
      2014-11-03 – 2014-11-06
    • Related Report
      2014 Research-status Report
  • [Presentation] Dissociative Adsorption of CO2 on Copper Surfaces2014

    • Author(s)
      F. Muttaqien, Y. Hamada, K. Inagaki and Y. Morikawa
    • Organizer
      The 7th International Symposium on Surface Science (ISSS-7)
    • Place of Presentation
      Matsue (島根県松江市)
    • Year and Date
      2014-11-03 – 2014-11-06
    • Related Report
      2014 Research-status Report
  • [Presentation] 第一原理シミュレーションによる固体表面および溶液中の反応シミュレーション2014

    • Author(s)
      森川良忠
    • Organizer
      第114回触媒討論会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2014-09-26
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] メタダイナミクス法による鈴木―宮浦クロスカップリング反応の解析2014

    • Author(s)
      平川皓朗、三村大輔、武田篤哉、、稲垣浩司、柳澤将、池田隆司、森川良忠
    • Organizer
      第114回触媒討論会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] 電子状態計算によるリガンドフリーの鈴木―宮浦クロスカップリングの律速段階2014

    • Author(s)
      平川皓朗、浦元雄太、武田篤哉、三村大輔、池田隆司、柳澤将、稲垣浩司、森川良忠
    • Organizer
      第8回分子科学討論会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2014-09-21 – 2014-09-24
    • Related Report
      2014 Research-status Report
  • [Presentation] Cu(111)面におけるHCOOH分解の第一原理計算2014

    • Author(s)
      鳥井史郎、Fahdzi Muttaqien、濱本雄治、稲垣浩司、森川良忠
    • Organizer
      日本物理学会2014秋季大会
    • Place of Presentation
      中部大学 (愛知県春日井市)
    • Year and Date
      2014-09-07 – 2014-09-10
    • Related Report
      2014 Research-status Report
  • [Presentation] 第一原理Metadynamics法を用いたフッ酸/Si(111)界面でのHFの解離吸着2014

    • Author(s)
      金森仁美、平川皓朗、杉山将啓、稲垣浩司、木﨑栄年、森川良忠
    • Organizer
      日本物理学会2014秋季大会
    • Place of Presentation
      中部大学 (愛知県春日井市)
    • Year and Date
      2014-09-07 – 2014-09-10
    • Related Report
      2014 Research-status Report
  • [Presentation] 水溶液中での鈴木―宮浦クロスカップリング反応の律速段階の解明2014

    • Author(s)
      平川皓朗、浦元雄太、武田篤哉、三村大輔、池田大輔、柳澤将、稲垣浩司、森川良忠
    • Organizer
      日本物理学会2014秋季大会
    • Place of Presentation
      中部大学 (愛知県春日井市)
    • Year and Date
      2014-09-07 – 2014-09-10
    • Related Report
      2014 Research-status Report
  • [Presentation] OH adsorptions and water dissociation in water-bilayer on Pt(322) stepped surface: Ab-initio simulations2014

    • Author(s)
      H. Kizaki, Kouji Inagaki, Ikutaro Hamada, Yoshitada Morikawa
    • Organizer
      8th International Conference on Environmental Catalysis
    • Place of Presentation
      Asheville, North Carolina in USA
    • Year and Date
      2014-08-24 – 2014-08-27
    • Related Report
      2014 Research-status Report
  • [Remarks] 森川研究室

    • URL

      http://www-cp.prec.eng.osaka-u.ac.jp/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 森川研究室

    • URL

      http://www-cp.prec.eng.osaka-u.ac.jp

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2022-02-16  

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