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Applications of Near-Infrared Raman Optical Activity to Photoreceptor Proteins

Research Project

Project/Area Number 26410017
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical chemistry
Research InstitutionSaga University

Principal Investigator

Unno Masashi  佐賀大学, 工学(系)研究科(研究院), 教授 (50255428)

Co-Investigator(Renkei-kenkyūsha) MASUDA Shinji  東京工業大学, バイオ研究基盤支援総合センター, 准教授 (30373369)
TAMOGAMI Jun  松山大学, 薬学部, 助教 (30580089)
KOMATSU Naoki  滋賀医科大学, 医学部, 准教授 (30253008)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords振動分光 / 生物物理 / 光受容タンパク質 / 量子化学計算 / 分子分光学 / 生物物理学 / 国際研究者交流 / 国際研究者交流(米国)
Outline of Final Research Achievements

Many biological cofactors, such as light-absorbing chromophores in photoreceptors, are intrinsically planar molecules. A protein environment, however, causes structural distortions of the cofactor, and such structural changes can lead to a modulation of chemical properties of the cofactor to maximize its biological activity. In this project, we have established the spectral analysis of Raman optical activity (ROA) based on quantum chemical calculations combined with molecular dynamics simulations. For an application of ROA to photoreceptor proteins, we have examined the effect of excitation wavelength on the ROA spectra for the first time.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (49 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (3 results) Journal Article (11 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 10 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (31 results) (of which Int'l Joint Research: 7 results,  Invited: 6 results) Book (1 results) Remarks (3 results)

  • [Int'l Joint Research] Oklahoma State University/Michigan State University(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] RMIT University(オーストラリア)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Oklahoma State University(米国)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Raman optical activity of tetra-alanine in the poly(L-proline) II type peptide conformation2017

    • Author(s)
      Masakazu Furuta, Tomotsumi Fujisawa, Hiroyasu Urago, Takahiro Eguchi, Takahito Shingae, Satoshi Takahashi, Ewan W. Blanch, Masashi Unno
    • Journal Title

      Phys. Chem. Chem. Phys.

      Volume: 19 Issue: 3 Pages: 2078-2086

    • DOI

      10.1039/c6cp07828a

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] ラマン光学活性分光法2016

    • Author(s)
      藤澤知績、海野雅司
    • Journal Title

      分光研究

      Volume: 65 Pages: 218-231

    • NAID

      40020995115

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ラマン分光法の有田焼評価への活用2016

    • Author(s)
      松尾英之、海野雅司
    • Journal Title

      セラミックス

      Volume: 51 Pages: 550-552

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Experimental detection of the intrinsic difference in Raman optical activity of a photoreceptor protein under pre-resonance and resonance conditions2015

    • Author(s)
      Haraguchi, S., Hara, M., Shingae, T., Kumauchi, M., Hoff, W. D., Unno, M.
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 54 Issue: 39 Pages: 11555-11558

    • DOI

      10.1002/anie.201505466

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The Roles of C-terminal Residues on the Thermal Stability and Local Heme Environment of Cytochrome c' from the Thermophilic Purple Sulfur Bacterium Thermochromatium2015

    • Author(s)
      Kimura, Y., Kasuga, S., Unno, M., Furusawa, T., Osoegawa, S., Sasaki, Y., Ohno, T., and Wang-Otomo, Z.-Y.
    • Journal Title

      Photosynthesis Research

      Volume: 124 Issue: 1 Pages: 19-29

    • DOI

      10.1007/s11120-014-0069-6

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Influence of Preparation Temperature of Precursor on the Thermal Stability of TiO2(B) and its Electrochemical Property as an Anode Material in the Lithium-Ion Battery2014

    • Author(s)
      Furuya, Y., Zhao, W., Iida, T., Unno, M., & Noguchi, H.
    • Journal Title

      Electrochemistry

      Volume: 82 Pages: 7-13

    • NAID

      130003387730

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Electrochemical Properties of Low-crystallinity TiO2(B)-Carbon Composite as an Anode Material in Lithium Ion Battery2014

    • Author(s)
      Furuya, Y., Zhao, W., Unno, M., & Noguchi, H.
    • Journal Title

      Electrochim. Acta

      Volume: 136 Pages: 266-273

    • DOI

      10.1016/j.electacta.2014.05.107

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Raman Optical Activity of a Cyclic Dipeptide Analyzed by Quantum Chemical Calculations Combined with Molecular Dynamics Simulations2014

    • Author(s)
      Urago, H., Suga, T., Hirata, T., Kodama, H., & Unno, M.
    • Journal Title

      J. Phys. Chem. B

      Volume: 118 Issue: 24 Pages: 6767-6774

    • DOI

      10.1021/jp503874z

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Synthesis and characterization of anisotropically expanded graphite oxide compounds derived from spherical graphite2014

    • Author(s)
      Zhao, W., Kido, G., Harada, S. Unno, M., Noguchi, H.
    • Journal Title

      J. Colloid Interface Sci.

      Volume: 431 Pages: 8-16

    • DOI

      10.1016/j.jcis.2014.06.018

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Synthesis of LiNi1/3Mn2/3O2 related cathode material from P2-Na2/3Ni1/3Mn2/3O2 for lithium ion battery2014

    • Author(s)
      Zhao, W., Tanaka, A., Tanaka, A., Unno, M., Yamamoto, S., Noguchi, H.
    • Journal Title

      Mater. Lett.

      Volume: 134 Pages: 206-209

    • DOI

      10.1016/j.matlet.2014.07.042

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Synthesis of metal ion substituted P2-Na2/3Ni1/3Mn2/3O2 cathode material with enhanced performance for Na ion batteries2014

    • Author(s)
      Zhao, W., Kirie, H., Tanaka, A., Unno, M., Yamamoto, S., Noguchi, H.
    • Journal Title

      Mater. Lett.

      Volume: 135 Pages: 131-134

    • DOI

      10.1016/j.matlet.2014.07.153

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] 紫外共鳴ラマン分光法を用いたシアノバクテリオクロムRcaEの光変換機構の解明2017

    • Author(s)
      渡邉 亘平、小副川 晋介、広瀬 侑、藤澤 知績、池内 昌彦、海野 雅司
    • Organizer
      日本化学会 第97春季年会 (2017)
    • Place of Presentation
      横浜
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] Assignment of Raman Optical Activity Spectra of Photoactive Yellow Protein by Isotopic Labeling2017

    • Author(s)
      HARAGUCHI, Shojiro; SHINGAE, Takahito; KASAI, Noritaka; KUMAUCHI, Masato; FUJISAWA, Tomotsumi; HANAMOTO, Takeshi; HOFF, Wouter D.; UNNO, Masashi
    • Organizer
      日本化学会 第97春季年会 (2017)
    • Place of Presentation
      横浜
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] Searching for anhamonic low frequency mode in green fluorescent protein2017

    • Author(s)
      FUJISAWA, Tomotsumi; UNNO, Masashi
    • Organizer
      日本化学会 第97春季年会 (2017)
    • Place of Presentation
      横浜
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] Chromophore conformation in active site of orange carotenoid protein from Raman optical activity spectroscopy2016

    • Author(s)
      Tomotsumi Fujisawa、Masashi Unno、Ryan L. Leverenz、Cheryl A. Kerfeld
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] 同位体標識試料を用いた BLUF ドメインの水素結合環境の解明2016

    • Author(s)
      Takashi Nagai, Tatsuya Iwata, Shota Ito, Mineo Iseki, Masakatsu Watanabe, Masashi Unno, Shinya Kitagawa, Hideki Kandori
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Raman Optical Activity of Photoreceptor Proteins under Pre-resonance and Resonance Conditions2016

    • Author(s)
      Masashi Unno
    • Organizer
      Fifth International Conference on Vibrational Optical Activity
    • Place of Presentation
      Antwerp, Belgium
    • Year and Date
      2016-09-11
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Chromophore conformation in active site of orange carotenoid protein from Raman optical activity2016

    • Author(s)
      Tomotsumi Fujisawa、Ryan L. Leverenz、Cheryl A. Kerfeld、Masashi Unno
    • Organizer
      Fifth International Conference on Vibrational Optical Activity
    • Place of Presentation
      Antwerp, Belgium
    • Year and Date
      2016-09-11
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Photoactive Yellow Protein発色団の面外方向への歪みに敏感なC-H面外変角振動モードの帰属2016

    • Author(s)
      原口 翔次郎、新ヶ江 貴仁、笠井 紀貴、熊内 雅人、藤澤 知績、花本 猛士、Wouter D. Hoff、海野 雅司
    • Organizer
      九重分子科学セミナー2016
    • Place of Presentation
      大分
    • Year and Date
      2016-09-02
    • Related Report
      2016 Annual Research Report
  • [Presentation] 紫外共鳴ラマン分光法によるシアノバクテリオクロムRcaEの光変換機構の解析2016

    • Author(s)
      渡邉 亘平、小副川 晋介、広瀬 侑、藤澤 知績、池内 昌彦、海野 雅司
    • Organizer
      九重分子科学セミナー2016
    • Place of Presentation
      大分
    • Year and Date
      2016-09-02
    • Related Report
      2016 Annual Research Report
  • [Presentation] ラマン光学活性に基づくオレンジカロテノイドタンパク質の活性部位における発色団の立体構造変化2016

    • Author(s)
      藤澤知績、Ryan L. Leverenz、Cheryl A. Kerfeld、海野雅司
    • Organizer
      第 43 回 生体分子科学討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2016-06-24
    • Related Report
      2016 Annual Research Report
  • [Presentation] Experimental detection of the intrinsic difference in Raman optical activity of a photoreceptor protein under pre-resonance and resonance conditions2016

    • Author(s)
      Haraguchi, S., Hara, M., Shingae, T., Kumauchi, M., Hoff, W. D., Unno, M.
    • Organizer
      日本化学会 第96春季年会
    • Place of Presentation
      京都
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] Chromophore conformation in active site of orange carotenoid protein studied by Raman optical activity spectroscopy2016

    • Author(s)
      FUJISAWA, Tomotsumi; LEVERENZ, Ryan; KERFELD, Cheryl; UNNO, Masashi
    • Organizer
      日本化学会 第96春季年会
    • Place of Presentation
      京都
    • Year and Date
      2016-03-25
    • Related Report
      2015 Research-status Report
  • [Presentation] ラマン分光法の有田焼への活用について2016

    • Author(s)
      渡孝則、海野雅司、嘉村翔太郎、松尾英之
    • Organizer
      第54回セラミックス基礎科学討論会
    • Place of Presentation
      佐賀
    • Year and Date
      2016-01-07
    • Related Report
      2015 Research-status Report
  • [Presentation] ラマン円偏光二色性分光を用いた色素タンパク質の構造解析2016

    • Author(s)
      海野雅司
    • Organizer
      第四回 分子設計研究会
    • Place of Presentation
      東京
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Experimental detection of the intrinsic difference in Raman optical activity of a photoreceptor protein under pre-resonance and resonance conditions2015

    • Author(s)
      Haraguchi, S., Hara, M., Shingae, T., Kumauchi, M., Hoff, W. D., Unno, M.
    • Organizer
      The 6th Joint Seminar between Saga University and Liaoning University
    • Place of Presentation
      佐賀
    • Year and Date
      2015-12-10
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Evidence for the presence of K and L intermediates in proteorhodopsin revealed by transient resonance Raman spectroscopy2015

    • Author(s)
      Yamaryo, H., Tajitsu, S., Tamogami, J., Fujisawa, T., Kamo, N., Unno, M.
    • Organizer
      The 6th Joint Seminar between Saga University and Liaoning University
    • Place of Presentation
      佐賀
    • Year and Date
      2015-12-10
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Experimental detection of the intrinsic difference in Raman optical activity of a photoreceptor protein under pre-resonance and resonance conditions2015

    • Author(s)
      Haraguchi, S., Hara, M., Shingae, T., Kumauchi, M., Hoff, W. D., Unno, M.
    • Organizer
      12th Annual Research Symposium in Biological Sciences
    • Place of Presentation
      Oklahoma
    • Year and Date
      2015-09-17
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 過渡共鳴ラマン分光法を用いたプロテオロドプシン光反応初期中間体の解析2015

    • Author(s)
      山領 春輝、田実 真一、田母神 淳、加茂 直樹、海野 雅司
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
  • [Presentation] Refinements of the Active Site Structures in Photoreceptor Proteins by Raman Optical Activity2015

    • Author(s)
      Masashi Unno
    • Organizer
      15th International Conference on Chiroptical Spectroscopy
    • Place of Presentation
      Sapporo
    • Year and Date
      2015-08-30
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 過渡共鳴ラマン分光法を用いたプロテオロドプシン初期中間体の解析2015

    • Author(s)
      山領 春輝、田実 真一、田母神 淳、加茂 直樹、海野 雅司
    • Organizer
      九重分子科学セミナー2015
    • Place of Presentation
      九重
    • Year and Date
      2015-07-24
    • Related Report
      2015 Research-status Report
  • [Presentation] Active Site Structures of Heme Proteins Studied by Raman Optical Activity2015

    • Author(s)
      T. Shingaea, M. Unno
    • Organizer
      "Metals in Biology” in Wako
    • Place of Presentation
      和光
    • Year and Date
      2015-06-16
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Exploring the active site structure of photoreceptor proteins by Raman optical activity2015

    • Author(s)
      Masashi Unno
    • Organizer
      APS March Meeting 2015
    • Place of Presentation
      San Antonio, TX, USA
    • Year and Date
      2015-03-03
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Near-Infrared Raman Optical Activity Probes the Active Site Structure of Photoreceptor Proteins2015

    • Author(s)
      Masashi Unno
    • Organizer
      Departmental Seminar, Department of Biochemistry & Molecular Biology, Oklahoma State University
    • Place of Presentation
      Stillwater, OK, USA
    • Year and Date
      2015-02-27
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Active Site Structure of Photoactive Yellow protin with a Locked Chromophore Analoge Revealed by Near-Infrared Raman Optical Activity2014

    • Author(s)
      Takahito Shingae, Kensuke Kubota, Nicole D. Foster, Masato Kumauchi, Wouter D. Hoff, Masashi Unno
    • Organizer
      The 9th Saga University-Daegu University Joint Seminar
    • Place of Presentation
      佐賀
    • Year and Date
      2014-11-17 – 2014-11-19
    • Related Report
      2014 Research-status Report
  • [Presentation] Near-Infrared Raman Optical Activity of Photoactive Yellow Protein with a Locked Chromophore Analogue Analyzed by Quantum Chemical Calculations and Molecular Dynamics Simulations2014

    • Author(s)
      Shojiro Haraguchi, Takahito Shingae, Masato Kumauchi, Wouter D. Hoff, Masashi Unno
    • Organizer
      The 9th Saga University-Daegu University Joint Seminar
    • Place of Presentation
      佐賀
    • Year and Date
      2014-11-17 – 2014-11-19
    • Related Report
      2014 Research-status Report
  • [Presentation] 分子動力学計算と量子化学計算を用いた環状ジペプチドのラマン円偏光二色性スペクトルの解析2014

    • Author(s)
      ○海野雅司,浦郷寛康,菅虎雄,兒玉浩明
    • Organizer
      第37回溶液化学シンポジウム
    • Place of Presentation
      佐賀
    • Year and Date
      2014-11-12 – 2014-11-13
    • Related Report
      2014 Research-status Report
  • [Presentation] 構造揺らぎを考慮して光受容タンパク質のラマン円偏光二色性スペクトルを解析する2014

    • Author(s)
      ○原口 翔次郎,古賀 菜月, 新ヶ江 貴仁, 熊内 雅人, Wouter D. HOFF, 海野 雅司
    • Organizer
      第37回溶液化学シンポジウム
    • Place of Presentation
      佐賀
    • Year and Date
      2014-11-12 – 2014-11-13
    • Related Report
      2014 Research-status Report
  • [Presentation] Raman Optical Activity of Peptides and Photoreceptor Proteins Analyzed by Quantum Chemical Calculations Combined with Molecular Dynamics Simulations2014

    • Author(s)
      Masashi Unno
    • Organizer
      Fourth International Conference on Vibrational Optical Activity
    • Place of Presentation
      Baoding, China
    • Year and Date
      2014-10-26 – 2014-10-29
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Active Site Structure of Photoactive Yellow protin with a Locked Chromophore Analoge Revealed by Near-Infrared Raman Optical Activity2014

    • Author(s)
      Takahito Shingae, Kensuke Kubota, Nicole D. Foster, Masato Kumauchi, Wouter D. Hoff, Masashi Unno
    • Organizer
      Fourth International Conference on Vibrational Optical Activity
    • Place of Presentation
      Baoding, China
    • Year and Date
      2014-10-26 – 2014-10-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Near-Infrared Raman Optical Activity of Photoactive Yellow Protein with a Locked Chromophore Analogue Analyzed by Quantum Chemical Calculations and Molecular Dynamics Simulations2014

    • Author(s)
      Shojiro Haraguchi, Takahito Shingae, Masato Kumauchi, Wouter D. Hoff, Masashi Unno
    • Organizer
      Fourth International Conference on Vibrational Optical Activity
    • Place of Presentation
      Baoding, China
    • Year and Date
      2014-10-26 – 2014-10-29
    • Related Report
      2014 Research-status Report
  • [Presentation] 共鳴ラマン分光法によるシアノバクテリオクロームRcaE発色団のプロトン化状態の解明2014

    • Author(s)
      ○小副川 晋介、広瀬 侑、池内昌彦、海野雅司
    • Organizer
      九重分光学関連夏季セミナー2014
    • Place of Presentation
      九重
    • Year and Date
      2014-07-25 – 2014-07-26
    • Related Report
      2014 Research-status Report
  • [Book] 生命の辞典、共鳴ラマン光学法2016

    • Author(s)
      海野雅司
    • Publisher
      朝倉書店
    • Related Report
      2015 Research-status Report
  • [Remarks] 佐賀大学 海野-藤澤研究室

    • URL

      http://biophysics.chem.saga-u.ac.jp/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 佐賀大学 海野-藤澤研究室

    • URL

      http://biophysics.chem.saga-u.ac.jp/

    • Related Report
      2015 Research-status Report
  • [Remarks] 佐賀大学海野研究室ホームページ

    • URL

      http://biophysics.chem.saga-u.ac.jp/unno-lab/homu.html

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2022-02-16  

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