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Development of fluorogenic probe for gene-analisis utilizing novel silylated fluorescent material

Research Project

Project/Area Number 26410173
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionGunma University

Principal Investigator

Shinozuka Kazuo  群馬大学, 大学院理工学府, 教授 (20206105)

Co-Investigator(Kenkyū-buntansha) 井上 裕介  群馬大学, 大学院理工学府, 准教授 (90304302)
Co-Investigator(Renkei-kenkyūsha) MORIGUCHI Tomohisa  群馬大学, 大学院理工学府, 准教授 (70334133)
Research Collaborator Jakir Ahmed Chowdury  
KAWASAKI Masakazu  
IRIE Yusuke  
HIDA Satomi  
MOKI Daisuke  
TOKITA Kazuki  
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords蛍光性オリゴDNA / シリル化ピレン / シリル化ペリレン / モレキュラービーコン / 一塩基ミスマッチ / 光励起電子移動
Outline of Final Research Achievements

Novel pyrene and perylene derivatives bearing a silly functional group were synthesized and incorporated into oligoDNA . The silylated pyrene and perylene derivatives possess enhanced fluorescence signal may be due to the characteristic sigma-pai interaction brought about by the silly group. The obtained oligoDNA baring a silylated pyrene at its 5'-terminus has a partial self-complementary sequence and, the fore, forms dumbbell shaped higher structure. In a buffer solution, the oligoDNA exhibited a faint fluorescence signal while it stays alone. On the other hand, the signal of the modified DNA showed a marked recovery (10 to 40 times) under the presence of the complementary oligonucleotide. In an appropriate conditions the modified DNA gave fluorescence signal under the presence of one-base mismatched complements in same extent as that while it stays alone. Thus, the modified DNA discriminated one-base mismatched complements with showing a fluorescence signal.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (16 results)

All 2017 2016 2015 2014

All Journal Article (4 results) (of which Peer Reviewed: 3 results,  Acknowledgement Compliant: 3 results,  Open Access: 3 results) Presentation (12 results) (of which Int'l Joint Research: 3 results)

  • [Journal Article] Synthesis and Properties of Novel Fluorescently Labeled Oligonucleotides Possessing Silylated Pyrene at the 5'-Terminus2015

    • Author(s)
      T.Moriguchi, D. Moki, T. Sekiguchi, T. Kato, K. Shinozuka
    • Journal Title

      Chem. Lett

      Volume: 44 Issue: 1 Pages: 44-46

    • DOI

      10.1246/cl.140800

    • NAID

      130004701543

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Pseudo-Dumbbell Type Molecular Beacon Probes bearing Modified Deoxyuridine Derivatives and a Silylated Pyrene as a Fluorophore2015

    • Author(s)
      Jakir Ahmed Chowdhury, Tomohisa Moriguchi, Kazuo Shinozuka,
    • Journal Title

      Bull. Chem. Soc. Jpn.

      Volume: 88 Pages: 496-502

    • NAID

      130004801842

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synthesis and Spectroscopic Properties of a Novel Bifunctional Pyrene Derivative and its Incorporation into OligoDNA2015

    • Author(s)
      Tomohisa Moriguchi, Satomi Hida, Fumio Yoneda and Kazuo Shinozuka,
    • Journal Title

      Aust. J. Chem.

      Volume: 68 Issue: 12 Pages: 256-259

    • DOI

      10.1246/cl.140805

    • NAID

      130004693836

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Synthesis and Properties of Novel Fluorescently Labeled Oligonucleotides Possessing Silylated Pyrene at the 5'-Terminus2014

    • Author(s)
      Jakir Ahmed Chowdhury, Tomohisa Moriguchi, Kazuo Shinozuka,
    • Journal Title

      Chem Lett.

      Volume: 44 Issue: 2 Pages: 44-46

    • DOI

      10.1071/ch14477

    • NAID

      130004701543

    • Related Report
      2014 Research-status Report
    • Open Access / Acknowledgement Compliant
  • [Presentation] 短鎖オリゴマーを用いたモレキュラービーコンプローブの配列識別能の向上2017

    • Author(s)
      川崎昌和、森口朋尚、篠塚和夫
    • Organizer
      日本化学会第97春季年会
    • Place of Presentation
      東京
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] 高リスク型HPV検出用モレキュラービーコンの開発2016

    • Author(s)
      入江勇輔、森口朋尚、篠塚和夫
    • Organizer
      第2回核酸医薬学会
    • Place of Presentation
      東京
    • Year and Date
      2016-11-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] Development of Dumbbell-Shaped Molecular Beacon Probes Bearing Diphenylsilylated Pyrene2016

    • Author(s)
      T. Moriguchi, R. Nakayama, D. Moki, and K. Shinozuka
    • Organizer
      The 43rd International Symposium of Nucleic Acids Chemistry
    • Place of Presentation
      KUMAMOTO
    • Year and Date
      2016-09-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ダンベル型構造を形成するデコイ核酸の熱安定性及び酵素耐性2016

    • Author(s)
      佐藤華苗、森口朋尚、篠塚和夫
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都府京田辺市 同志社大学
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] 高リスク型HPVモレキュラービーコンプローブの開発2016

    • Author(s)
      入江勇輔、森口朋尚、篠塚和夫
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都府京田辺市 同志社大学
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] シリル化シアノピレンを導入したモレキュラービーコンプローブの開発2016

    • Author(s)
      時田和樹・森口朋尚・篠塚和夫
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都府京田辺市 同志社大学
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] Development of Convenient Genotyping of High-Risk HPV using Fluorescence DNA Probes2016

    • Author(s)
      Y. Irie, K. Shinozuka, T. Sano, T. Moriguchi
    • Organizer
      The 3rd International Symposium of Gunma University Medical Innovation
    • Place of Presentation
      KIRYU
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ジフェニルシリルピレンを導入したダンベル型モレキュラービーコンの開発2015

    • Author(s)
      森口朋尚、中山綾平、篠塚和夫
    • Organizer
      日本核酸医薬学会第1回年会
    • Place of Presentation
      京都府 京都テルサ
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Development of Molecular Beacon Probes for High-Risk HPV Genotyping2015

    • Author(s)
      Yusuke Irie, Tomohisa Moriguchi, Kazuo Shinozuka
    • Organizer
      The 5th International Symposium on Element Innovation
    • Place of Presentation
      Kiryu, Japan
    • Year and Date
      2015-11-30
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Development of novel quencher free fluorescent oligoDNA probe utilizing silylated pyrene as a fluorophore2014

    • Author(s)
      Jakir Ahmed Chowdhury, Tomohisa Moriguchi, Kazuo Shinozuka
    • Organizer
      The 41st International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      Kitakyushu, Japan
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Research-status Report
  • [Presentation] Synthesis and fluorescence property of the modified oligonucleotides containing silylated cyanopyrene derivatives2014

    • Author(s)
      Satomi Hida, Tomohisa Moriguchi, Kazuo Shinozuka
    • Organizer
      The 4th International Symposium on Element Innovation
    • Place of Presentation
      Kiryu, Japan
    • Year and Date
      2014-10-24
    • Related Report
      2014 Research-status Report
  • [Presentation] 新規シリル化ピレン誘導体およびこれを導入した蛍光プローブの開発2014

    • Author(s)
      飛田怜実、森口朋尚、篠塚和夫
    • Organizer
      アンチセンス・遺伝子・デリバリーシンポジウム2014
    • Place of Presentation
      東京
    • Year and Date
      2014-09-08 – 2014-09-09
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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