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Functional analysis of radical SAM enzymes involved in the biosynthesis of aminoglycoside antibiotics

Research Project

Project/Area Number 26410174
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionTokyo Institute of Technology

Principal Investigator

KUDO FUMITAKA  東京工業大学, 理学院, 准教授 (00361783)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords天然物化学 / 生合成 / 酵素 / アミノグリコシド抗生物質 / ネオマイシン / アプラマイシン / ラジカルSAM酵素 / 鉄硫黄クラスター / 鉄-硫黄クラスター / デオキシ化機構 / エピメリ化機構 / イスタマイシン / 修飾酵素 / EPR解析
Outline of Final Research Achievements

Aminoglycoside antibiotics contain a unique aminocyclitol that is decorated with various aminosugars leading to a wide variety of structures including kanamycin and neomycin. A common biosynthetic scheme of kanamycin and neomycin has been elucidated, when this project started. Thus, unique enzymatic modifications of common biosynthetic intermediates were speculated to be involved in the individual biosynthetic machinery. Radical S-adenosyl-L-methionine (SAM) enzymes that are often encoded in the biosynthetic gene clusters are supposed to be responsible for such unique reaction, because radical SAM enzyme generates 5′-deoxyadenosyl radical that can trigger various radical reactions in living system. In current research program, I focused on the functional analysis of radical SAM epimerase NeoN in neomycin B biosynthesis and radical SAM dehydratase AprD4 in apramycin biosynthesis. Consequently, we could clarify the functions of NeoN and AprD4 and propose plausible reaction mechanisms.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (10 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (3 results) (of which Peer Reviewed: 3 results,  Acknowledgement Compliant: 3 results) Presentation (5 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Remarks (1 results)

  • [Int'l Joint Research] University of Southampton(United Kingdom)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Substrate Specificity of Radical S-Adenosyl-L-methionine Dehydratase AprD4 and Its Partner Reductase AprD3 in the C3′-Deoxygenation of Aminoglycoside Antibiotics2017

    • Author(s)
      Fumitaka Kudo, Takeshi Tsunoda, Makoto Takashima, Tadashi Eguchi
    • Journal Title

      J. Antibiot.

      Volume: 70 Issue: 4 Pages: 423-428

    • DOI

      10.1038/ja.2016.110

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Aminoglycoside Antibiotics: New Insights into the Biosynthetic Machinery of Old Drugs2016

    • Author(s)
      F. Kudo and T. Eguchi
    • Journal Title

      Chem. Rec.

      Volume: 16 Issue: 1 Pages: 4-18

    • DOI

      10.1002/tcr.201500210

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Characterization of a Radical S-Adenosyl-methionine Epimerase, NeoN, in the Last Step of Neomycin B Biosynthesis2014

    • Author(s)
      Fumitaka Kudo, Shota Hoshi, Taiki Kawashima, Toshiaki Kamachi, Tadashi Eguchi
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 136 Issue: 39 Pages: 13909-13915

    • DOI

      10.1021/ja507759f

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Functional analysis of radical SAM enzyme AprD4 and reductase AprD3 in the C3′-deoxygenation in apramycin biosynthesis2017

    • Author(s)
      Fumitaka Kudo, Takahiro Tokumitsu and Tadashi Eguchi
    • Organizer
      Directing Biosynthesis V
    • Place of Presentation
      University of Warwick, Warwick, UK
    • Year and Date
      2017-03-22
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Reaction mechanisms of radical SAM enzymes involved in the biosynthesis of aminoglycoside antibiotics2015

    • Author(s)
      Fumitaka Kudo, Shota Hoshi, Tadashi Eguchi
    • Organizer
      PacifiChem2015
    • Place of Presentation
      Honolulu, HI, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] アミノグリコシド抗生物質アプラマイシン生合成におけるC-3’位デオキシ化機構2015

    • Author(s)
      徳光 貴洋・工藤 史貴・江口 正
    • Organizer
      日本化学会第95春季年会(2015)
    • Place of Presentation
      日本大学船橋キャンパス(千葉県)
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Radical SAM Enzymes Involved in the Biosynthesis of Aminoglycoside Antibiotics2014

    • Author(s)
      Fumitaka Kudo(工藤史貴)
    • Organizer
      The 9th International Conference on Cutting-Edge Organic Chemistry in Asia under Asian Core Program (ICCEOA-9)
    • Place of Presentation
      Eastin Hotel Petaling Jaya(Malaysia)
    • Year and Date
      2014-12-01 – 2014-12-04
    • Related Report
      2014 Research-status Report
  • [Presentation] アミノグリコシド抗生物質の生合成におけるラジカル活性化を契機とする修飾酵素反応機構2014

    • Author(s)
      工藤 史貴,星 正太,Hilda Sucipto,江口 正
    • Organizer
      第56回天然有機化合物討論会
    • Place of Presentation
      高知県立県民文化ホール(高知県)
    • Year and Date
      2014-10-15 – 2014-10-17
    • Related Report
      2014 Research-status Report
  • [Remarks] 東京工業大学大学院理工学研究科江口・工藤研究室ホームページ

    • URL

      http://www.cms.titech.ac.jp/~eguchi/publications.html

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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