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Development of life-survey methods using SERS probes

Research Project

Project/Area Number 26410179
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionKyoto Institute of Technology

Principal Investigator

KOBORI AKIO  京都工芸繊維大学, 分子化学系, 准教授 (00397605)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsSERS / ラマン散乱 / DNA / RNA / miRNA / エピジェネティクス
Outline of Final Research Achievements

It is reported that concentration of particular RNAs in body fluids is associated with the onset of the diseases. Therefore the RNAs in blood serum, urine, and saliva are anticipated to be used as biomarkers for the diagnosis of severe diseases. Although reverse transcription quantitative PCR is generally used to quantify RNAs, the PCR has been poorly utilized as a diagnostic method due to a complicated operation for amplification of nucleic acids. Until now, we have developed a highly sensitive and simple nucleic acid detection system that does not require the amplification step of nucleic acids. In this study, we developed a chemical tag with a Raman signal in a region that does not appear any signals of the biological component in the Raman spectrum and constructed a sandwich assay system using a SERS positive tag.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (32 results)

All 2017 2016 2015 2014 Other

All Journal Article (7 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 7 results,  Acknowledgement Compliant: 7 results,  Open Access: 4 results) Presentation (23 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Development of Novel Photoresponsive Oligodeoxyribonucleotides with a 2'-O-Diazirine-conjugated Adenosine for DNA Interstrand Crosslinking2017

    • Author(s)
      Yuta Sugihara, Soichi Tatsumi, Akio Kobori
    • Journal Title

      chemistry letters

      Volume: 46 Issue: 2 Pages: 236-239

    • DOI

      10.1246/cl.160998

    • NAID

      130005317075

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Characterization of the Releasing Profile of MicroRNA from RISC Using Anti-miRNA Oligonucleotides2017

    • Author(s)
      Jumpei Ariyoshi, Nao Eimori, Akio Kobori, Akira Murakami, Hiroshi Sugiyama, Asako Yamayoshi
    • Journal Title

      chemistry letters

      Volume: 46 Issue: 1 Pages: 143-145

    • DOI

      10.1246/cl.160895

    • NAID

      130005308315

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Inhibition effect of photoresponsive α-haloaldehyde-conjugated oligonucleotides on the gene expression in HeLa cells stably expressing GFP2017

    • Author(s)
      Sugihara, Yuta; NAKATA, YUKI; Yamayoshi, Asako; Murakami, Akira; Kobori, Akio
    • Journal Title

      chemistry letters

      Volume: 46 Issue: 8 Pages: 1265-1268

    • DOI

      10.1246/cl.170298

    • NAID

      130005907030

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Cross-Linking Antisense Oligodeoxyribonucleotides with a Photoresponsive α-Chloroaldehyde Moiety for RNA Point Mutations2016

    • Author(s)
      Sugihara Y., Nakata Y., Yamayoshi A., Murakami A., Kobori A.
    • Journal Title

      J Org Chem

      Volume: 81 Issue: 3 Pages: 981-986

    • DOI

      10.1021/acs.joc.5b02573

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Development of Novel Antisense Oligonucleotides for the Functional Regulation2015

    • Author(s)
      Ariyoshi, J., Momokawa, D., Eimori, N., Kobori, A., Murakami A., Yamayoshi, A.
    • Journal Title

      Bioconjugate Chemistry

      Volume: 26 Issue: 12 Pages: 2454-2460

    • DOI

      10.1021/acs.bioconjchem.5b00501

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Novel photodynamic effect of psoralen-conjugated oligonucleotides for discrimination of methylation of cytosine in DNA2014

    • Author(s)
      Yamayoshi, A.*, Matsuyama, Y., Kushida, M., Kobori, A., Murakami A.
    • Journal Title

      Photochemistry and Photobiology

      Volume: 90 Issue: 3 Pages: 716-722

    • DOI

      10.1111/php.12232

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Functional regulation of RNA-induced silencing complex by photoreactive oligonucleotides2014

    • Author(s)
      Matsuyama, Y., Yamayoshi, A.*, Kobori, A., Murakami A.
    • Journal Title

      Bioorg Med Chem

      Volume: 22 Issue: 3 Pages: 1003-1007

    • DOI

      10.1016/j.bmc.2013.12.044

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 生体直行型SERSプローブの開発と標的核酸検出への応用2017

    • Author(s)
      太田良、髙木紀志、永井悠貴、杉原悠太、小堀哲生
    • Organizer
      日本化学会春季年会
    • Place of Presentation
      慶応大学
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] リキッドバイオプシーを志向した体液中miRNA測定2017

    • Author(s)
      小堀哲生
    • Organizer
      ケミカルバイオロジーmini-symposium at KIT
    • Place of Presentation
      京都工芸繊維大学
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] ピレンプローブを用いたサンドイッチ型microRNA検出法2016

    • Author(s)
      中嶋康介、渡優有、杉原悠太、有吉純平、山吉麻子、村上章、小堀哲生
    • Organizer
      日本核酸医薬学会第2回年会
    • Place of Presentation
      東京理科大学
    • Year and Date
      2016-11-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] Development of a miRNA diagnostic system with LNA-conjugated solid supports and PMUpy2 probes2016

    • Author(s)
      Y.Sugihra, K. Nakajima, Y.Watari, J.Ariyoshi,A.Yamayoshi, A.Murakami, A.Kobori
    • Organizer
      ISNAC2016
    • Place of Presentation
      熊本大学
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Photo-cross-linking oligonucleotides: toward regulation of target gene expression2016

    • Author(s)
      A.Kobori
    • Organizer
      THE 14th VIETNAM&JAPAN INTERNATIONAL JOINT SEMINAR
    • Place of Presentation
      ハノイ工科大学
    • Year and Date
      2016-09-21
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RISC機能の制御を目指した遺伝子発現制御素子の開発(Ⅳ)アンチセンス核酸の化学構造がRISCからのmicroRNA解離効果に与える影響2016

    • Author(s)
      有吉 純平, 栄森 奈緒, 小西 諒, 小堀 哲生, 村上 章, 山吉 麻子
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      同志社大学 京田辺キャンパス
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] ケージドαハロアルデヒド基を持つ架橋性アンチセンス核酸の細胞内活性評価2016

    • Author(s)
      杉原 悠太, 中田 有紀, 山吉 麻子, 村上 章, 小堀 哲生
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      同志社大学 京田辺キャンパス
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] ピレン修飾核酸プローブを用いたmiRNA検出システムの開2016

    • Author(s)
      中嶋 康介, 西村 茜, 山吉 麻子, 村上 章, 小堀 哲生
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      同志社大学 京田辺キャンパス
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] イミダゾロン誘導体を塩基部にもつフォトクロミック核酸の合成と機能評価2016

    • Author(s)
      杉田 貴之,中村 一喜, 新井 太一郎, 山吉 麻子, 村上 章, 小堀 哲生
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      同志社大学 京田辺キャンパス
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] Development of a novel drug delivery system for targeting microRNA2016

    • Author(s)
      ○KISHIMOTO, Yusuke, TAMURA, Rie, MURAMATSU, Chie, KOBORI, Akio, ASHIHARA, Eishi, MURAKAMI, Akira YAMAYOSHI, Asako
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      同志社大学 京田辺キャンパス
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] Development of a novel system for evaluation of binding affinities between RISC and antisense oligonucleotides2016

    • Author(s)
      ○KONISHI, Ryo, ARIYOSHI, Jumpei, MATSUYAMA, Yohei, NAKAMURA, Hiromi1, KOBORI, Akio, MURAKAMI, Akira YAMAYOSHI, Asako
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      同志社大学 京田辺キャンパス
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] Regulation of translational activity of EGFP mRNA using photoresponsive α-haloaldehyde-conjugated ORNs2015

    • Author(s)
      Yuki Nakata1, Yuta Sugihara, Akio Kobori, Asako Yamayoshi, Akira Murakami
    • Organizer
      THE INTERNATIONAL CHEMICAL CONGRESS OF ACIFIC BASIN SOCIETIES 2015
    • Place of Presentation
      Hawaii Convention Center
    • Year and Date
      2015-12-15
    • Related Report
      2015 Research-status Report
  • [Presentation] Novel inhibitors targeting microRNA: Peptide-oligonucleotide conjugates for promotional releasing of microRNA from RISC2015

    • Author(s)
      Jumpei ARIYOSHI, Nao EIMORI, Ryo KONISHI, Akio KOBORI, Akira MURAKAMI, Asako YAMAYOSHI
    • Organizer
      THE INTERNATIONAL CHEMICAL CONGRESS OF ACIFIC BASIN SOCIETIES 2015
    • Place of Presentation
      Hawaii Convention Center
    • Year and Date
      2015-12-15
    • Related Report
      2015 Research-status Report
  • [Presentation] Analysis of alternative splicing by homogeneous fluorescence assay2015

    • Author(s)
      Nakajima, Kosuke; Nishimura, Akane; Yamayoshi, Asako
    • Organizer
      THE INTERNATIONAL CHEMICAL CONGRESS OF ACIFIC BASIN SOCIETIES 2015
    • Place of Presentation
      Hawaii Convention Center
    • Year and Date
      2015-12-15
    • Related Report
      2015 Research-status Report
  • [Presentation] HEXIM1たんぱく質に対して特異的結合能を有する新規転写抑制剤の開発2015

    • Author(s)
      吉本航大,岸本恭介,小堀哲生, 村上章, 山吉麻子
    • Organizer
      第一回日本核酸医薬学会
    • Place of Presentation
      京都テルサ
    • Year and Date
      2015-11-30
    • Related Report
      2015 Research-status Report
  • [Presentation] RISC活性の制御を目指した機能性核酸の開発(II)アンチセンス核酸(ASO)の化学構造がRISCからのmicroRNAの解離に与える影響2015

    • Author(s)
      有吉 純平, 小西 諒, 栄森 奈緒, 小堀 哲生, 村上 章, 山吉 麻子
    • Organizer
      第一回日本核酸医薬学会
    • Place of Presentation
      京都テルサ
    • Year and Date
      2015-11-30
    • Related Report
      2015 Research-status Report
  • [Presentation] イミダゾロン誘導体が導入されたフォトクロミック核酸の合成と機能評価2015

    • Author(s)
      杉田 貴之・中村 一喜・山吉 麻子・村上 章・小堀 哲生
    • Organizer
      4大学連携研究フォーラム
    • Place of Presentation
      京都工芸繊維大学 60週年記念館 記念ホール
    • Year and Date
      2015-11-25
    • Related Report
      2015 Research-status Report
  • [Presentation] 病原性リボヌクレオプロテインの活性制御を目指した機能性核酸分子の開発2015

    • Author(s)
      有吉 純平, 栄森 奈緒, 小堀 哲生, 村上 章, 山吉 麻子
    • Organizer
      第5回4大学連携研究フォーラム
    • Place of Presentation
      京都工芸繊維大学60周年記念館記念ホール
    • Year and Date
      2015-11-25
    • Related Report
      2015 Research-status Report
  • [Presentation] イミダゾロン誘導体が導入されたフォトクロミック核酸塩基の合成と機能評価2015

    • Author(s)
      杉田 貴之・新井 太一朗1・坂田 優也・中村 一喜・山吉 麻子・村上 章・小堀 哲生
    • Organizer
      第45回 複素環化学討論会
    • Place of Presentation
      早稲田大学国際会議場
    • Year and Date
      2015-11-19
    • Related Report
      2015 Research-status Report
  • [Presentation] Development of novel RISC inhibitors for promoting release of microRNA from RISC (II) The effects of chemical modifications of oligonucleotides on releasing of microRNA from RISC2015

    • Author(s)
      有吉 純平,栄森 奈緒, 小西 諒, 小堀 哲生, 村上 章, 山吉 麻子
    • Organizer
      The 42nd International Synposium on Nucleic Acids Chemistry 2015 (ISNAC2015)
    • Place of Presentation
      イーグレひめじ
    • Year and Date
      2015-09-23
    • Related Report
      2015 Research-status Report
  • [Presentation] 人工核酸によるnon-codingRNAの機能制御(Ⅴ) microRNAを標的とした機能性核酸の設計指針2015

    • Author(s)
      有吉 純平,栄森 奈緒, 小西 諒, 小堀 哲生, 村上 章, 山吉 麻子
    • Organizer
      第25回 バイオ・高分子シンポジウム
    • Place of Presentation
      東京工業大学大岡山キャンパス
    • Year and Date
      2015-07-23
    • Related Report
      2015 Research-status Report
  • [Presentation] ピレン修飾核酸を用いた変異型mRNAの診断システム2015

    • Author(s)
      小堀 哲生・西村 茜・中嶋 康介・山吉 麻子・村上 章
    • Organizer
      第61回高分子研究発表会
    • Place of Presentation
      兵庫県民会館
    • Year and Date
      2015-07-17
    • Related Report
      2015 Research-status Report
  • [Presentation] 核酸ドラッグのRISCに対する結合親和性評価法の開発2015

    • Author(s)
      小西 諒、松山 洋平、有吉 純平、小堀 哲生、村上 章、山吉 麻子
    • Organizer
      第62回 日本生化学会近畿支部例会
    • Place of Presentation
      立命館大学 びわこ・くさつキャンパス
    • Year and Date
      2015-05-16
    • Related Report
      2015 Research-status Report
  • [Book] Curr. Protoc. Nucleic acid Chem.2014

    • Author(s)
      A. Kobori; A. Yamayoshi; Akira Murakami.
    • Total Pages
      15
    • Publisher
      Wiley and Sons. Inc.
    • Related Report
      2014 Research-status Report
  • [Remarks] 生体高分子情報研究室 ホームページ

    • URL

      http://www.cis.kit.ac.jp/~antisen/seijo.html

    • Related Report
      2016 Annual Research Report

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Published: 2014-04-04   Modified: 2018-03-22  

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