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Quantification of post-translational modified amino acids by 2D-HPLC and ultra-sensitive amino acid analysis

Research Project

Project/Area Number 26410190
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionNational Institute of Maritime, Port and Aviation Technology

Principal Investigator

Masuda Akiko  国立研究開発法人海上・港湾・航空技術研究所, その他部局等, 研究員 (10322679)

Co-Investigator(Kenkyū-buntansha) 堂前 直  国立研究開発法人理化学研究所, 環境資源科学研究センター, ユニットリーダー (00321787)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsアミノ酸分析 / 翻訳後修飾 / タンパク質 / 2次元クロマトグラフィー / 翻訳後修飾アミノ酸 / 固体酸触媒 / 加水分解 / アミノ酸
Outline of Final Research Achievements

Proteins are chemically modified after translation based on genetic information of DNA, the modifications which are related to the expression of various functions of proteins. The modifications are referred to as post-translational modifications (PTMs). It is important to elucidate the relationship between PTMs and protein functions. In order to analysis of PTMs, modified amino acids themselves must be quantified since there is no description in DNA of what kind of modifications are executed. Until now, however, it has been difficult to quantify the modified amino acids because only small amounts of them are contained. In this study, quantitative hydrolysis method of proteins to amino acids and 2-dimensional HPLC to improve the resolution of analysis were developed. Combining these techniques with ultra-sensitive amino acid analysis, the analysis method was established for absolute quantification of modified amino acids.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (7 results)

All 2016 2014 Other

All Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (3 results) Remarks (1 results)

  • [Journal Article] アミノ酸分析の膜タンパク質構造解析への応用2016

    • Author(s)
      堂前直
    • Journal Title

      アミノ酸研究

      Volume: 10 Pages: 67-69

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Structural basis for amino-acid export by DMT superfamily transporter YddG2016

    • Author(s)
      H. Tsuchiya, S. Doki, M. Takemoto, T. Ikuta, T. Higuchi, K. Fukui, Y. Usuda, E. Tabuchi, S. Nagatoishi, K. Tsumoto, T. Nishizawa, K. Ito, N. Dohmae, R. Ishitani and O. Nureki
    • Journal Title

      Nature

      Volume: 534 Issue: 7607 Pages: 417-420

    • DOI

      10.1038/nature17991

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Neisseria meningitidis Translation Elongation Factor P and Its Active-Site Arginine Residue Are Essential for Cell Viability2016

    • Author(s)
      Yanagisawa T, Takahashi H, Suzuki T, Masuda A, Dohmae N, Yokoyama S.
    • Journal Title

      PLoS ONE

      Volume: 11(2) Issue: 2 Pages: e0147907-e0147907

    • DOI

      10.1371/journal.pone.0147907

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] ヒストンリジン残基の水酸化修飾の発見とDNA メチル化に関与する新しい因子の発見2016

    • Author(s)
      鵜木 元香、益田 晶子、堂前 直、 中村 祐輔、佐々木 裕之
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡
    • Related Report
      2016 Annual Research Report
  • [Presentation] 自動・迅速アミノ酸分析を可能にする固体酸触媒をもちいた加水分解方法の検討2014

    • Author(s)
      益田晶子、堂前直
    • Organizer
      日本分析化学会第63年会
    • Place of Presentation
      広島
    • Year and Date
      2014-09-19
    • Related Report
      2014 Research-status Report
  • [Presentation] 固体酸触媒を利用したタンパク質加水分解2014

    • Author(s)
      堂前直、益田晶子
    • Organizer
      第4回日本アミノ酸学会・産官学連携シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2014-06-16
    • Related Report
      2014 Research-status Report
  • [Remarks] 生命分子解析ユニット 論文リスト

    • URL

      http://www.riken.jp/BiomolChar/publications.html

    • Related Report
      2015 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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