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Genome research elucidating environmental adaptation of Dark-fly

Research Project

Project/Area Number 26430189
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Genome biology
Research InstitutionTohoku University (2016)
Kyoto University (2015)
The Institute of Physical and Chemical Research (2014)

Principal Investigator

Fuse Naoyuki  東北大学, 薬学研究科, 助教 (80321983)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords環境適応 / ショウジョウバエ / ゲノム / トランスクリプトーム / ゲノム編集 / ロドプシン / 光
Outline of Final Research Achievements

Organisms are remarkably adapted to diverse environments, but molecular mechanism underlying environmental adaptation still remains elusive. To address this issue, we utilize a unique Drosophila line, "Dark-fly", which has been maintained for 62 years in a constant dark condition.
We determined whole genome sequence of Dark-fly using next-generation sequencer and identified approximately 220,000 single nucleotide polymorphisms (SNPs) in the Dark-fly genome. To identify SNPs associated with dark-adaptation, we reared mixed populations of Dark-fly and the wild type fly in light and dark conditions. Our analyses of population genome detected environment-dependent selections of the Dark-fly genome. We consequently listed 84 candidate genes potentially involved in the adaptation of Dark-fly. We currently aim to clarify the roles of Dark-fly's SNPs in environmental adaptation using genome editing technology.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (3 results)

All 2017 2016 2015

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (1 results) (of which Invited: 1 results)

  • [Journal Article] Genome research elucidating environmental adaptation: Dark-fly project as a case study2017

    • Author(s)
      Naoyuki Fuse
    • Journal Title

      Current Opinion in Genetics & Development

      Volume: 45 Pages: 97-102

    • DOI

      10.1016/j.gde.2017.03.004

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Dynamics of Dark-Fly Genome Under Environmental Selections2016

    • Author(s)
      Minako Izutsu, Atsushi Toyoda, Asao Fujiyama, Kiyokazu Agata, Naoyuki Fuse
    • Journal Title

      G3: Genes, Genomes, Genetics

      Volume: 6 Issue: 2 Pages: 365-376

    • DOI

      10.1534/g3.115.023549

    • NAID

      120005716321

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] ゲノムの視点から迫るショウジョウバエの暗闇適応のメカニズム2015

    • Author(s)
      布施直之
    • Organizer
      第8回 Evo-devo青年の会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2015-06-27
    • Related Report
      2015 Research-status Report
    • Invited

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Published: 2014-04-04   Modified: 2018-03-22  

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