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Genome Editing to Improve Abiotic Stress Responses in Plants

Research Project

Project/Area Number 26430190
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Genome biology
Research InstitutionThe University of Tokushima (2015-2016)
The Institute of Physical and Chemical Research (2014)

Principal Investigator

Osakabe Yuriko  徳島大学, 大学院生物資源産業学研究部(連携), 特任准教授 (50444071)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsゲノム編集 / 環境ストレス / イオン輸送体 / ストレス応答 / CRISPR/CAS9
Outline of Final Research Achievements

Genome editing is now widely utilized to modify various plant genomes. Using a truncated gRNA (tru-gRNA)/Cas9, we generated new alleles for OST2, a proton pump in Arabidopsis, with no off-target effects. Newly generated mutations in CRIPSR/Cas9 transgenic plants were detected with the average mutation rates of 32.8% using a constitutive promoter for Cas9 expression. The reducing nuclear localization signals (NLS) in Cas9 decreased the mutation rates. The tru-gRNA/Cas9 driven by the meristematic- and reproductive tissue-specific promoters increased the heritable mutation rate in Arabidopsis, showing that high expression in the germ line can produce bi-allelic mutations with high mutation efficiency. Finally, we generated the new mutant alleles for OST2, and the mutants exhibited altered stomatal closing in response to stress conditions. The results suggest further applications in molecular breeding to improve plant function using optimized CRISPR/Cas9.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (40 results)

All 2017 2016 2015 2014 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Open Access: 6 results,  Acknowledgement Compliant: 4 results) Presentation (23 results) (of which Int'l Joint Research: 3 results,  Invited: 7 results) Book (5 results) Remarks (2 results)

  • [Journal Article] Efficient and heritable targeted mutagenesis in mosses using the CRISPR/Cas9 system2016

    • Author(s)
      T. Nomura, T. Sakurai, Yuriko Osakabe, Keishi Osakabe and H. Sakakibara
    • Journal Title

      Plant & Cell Physiology

      Volume: 57 Issue: 12 Pages: 2600-2610

    • DOI

      10.1093/pcp/pcw173

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Efficient Genome Editing in Apple Using a CRISPR/Cas9 system2016

    • Author(s)
      Chikako Nishitani, Narumi Hirai, Sadao Komori, Masato Wada, Kazuma Okada, Keishi Osakabe, Toshiya Yamamoto and Yuriko Osakabe
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 31481-31481

    • DOI

      10.1038/srep31481

    • NAID

      120006240044

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Optimization of CRISPR/Cas9 genome editing to modify abiotic stress responses in plants.2016

    • Author(s)
      Yuriko Osakabe, Y Watanabe, SS Sugano, R Ueta, R Ishihara, K Shinozaki and Keishi Osakabe
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 26685-26685

    • DOI

      10.1038/srep26685

    • NAID

      120006240041

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genome engineering of woody plants: past, present and future2016

    • Author(s)
      Yuriko Osakabe, Shigeo S Sugano and Keishi Osakabe
    • Journal Title

      Journal of Wood Science

      Volume: 62 Issue: 3 Pages: 1-9

    • DOI

      10.1007/s10086-016-1548-5

    • NAID

      120006961148

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genome editing with engineered nucleases in plants.2015

    • Author(s)
      Yuriko Osakabe and Keishi Osakabe
    • Journal Title

      Plant & Cell Physiology

      Volume: 56 Issue: 3 Pages: 389-400

    • DOI

      10.1093/pcp/pcu170

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] ABA control of plant macroelement membrane transport systems in response to water deficit and high salinity.2014

    • Author(s)
      Osakabe, Y., Yamaguchi-Shinozaki, K., Shinozaki, K., and Tran, L-S
    • Journal Title

      New Phytology

      Volume: 202, Issue: 1 Pages: 35-49

    • DOI

      10.1111/nph.12613

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] A mutated cytosine deaminase gene, codA (D314A), as an efficient negative selection marker for gene targeting in rice.2014

    • Author(s)
      Keishi Osakabe, Ayako Nishizawa-Yokoi, Namie Ohtsuki, Yuriko Osakabe, Seiichi Toki
    • Journal Title

      Plant Cell Physiology

      Volume: 55 Issue: 3 Pages: 658-665

    • DOI

      10.1093/pcp/pct183

    • NAID

      40020302254

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Positive regulatory role of strigolactone in plant responses to drought and salt stress.2014

    • Author(s)
      Ha CV, Leyva-Gonzalez MA, Osakabe Y, Tran UT, Nishiyama R, Watanabe Y, Tanaka M, Seki M, Yamaguchi S, Dong NV, Yamaguchi-Shinozaki K, Shinozaki K, Herrera-Estrella L, Tran LS.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 111(2) Issue: 2 Pages: 851-856

    • DOI

      10.1073/pnas.1322135111

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Water stress responses and growth adjustment in plants.2014

    • Author(s)
      Osakabe, Y., Osakabe, K., Shinozaki, K., and Tran, L-S.
    • Journal Title

      Frontiers in Plant Physiology

      Volume: 5 Pages: 86-86

    • DOI

      10.3389/fpls.2014.00086

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Arabidopsis DPB3-1, a DREB2A Interactor, Specifically Enhances Heat Stress-Induced Gene Expression by Forming a Heat Stress-Specific Transcriptional Complex with NF-Y Subunits2014

    • Author(s)
      Hikaru Sato, Junya Mizoi, Hidenori Tanaka, Kyonosin Maruyama, Feng Qin, Yuriko Osakabe, Kyoko Morimoto, Teppei Ohori, Kazuya Kusakabe, Maika Nagata, Kazuo Shinozaki, Kazuko Yamaguchi-Shinozaki
    • Journal Title

      Plant Cell

      Volume: 26 Issue: 12 Pages: 4954-4973

    • DOI

      10.1105/tpc.114.132928

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] CRISPR/Cas9 による植物ゲノム編集技術の開発2017

    • Author(s)
      刑部祐里子
    • Organizer
      第58回日本植物生理学会年会シンポジウム
    • Place of Presentation
      鹿児島大学(鹿児島県鹿児島市)
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 根毛形成に異常を示すシロイヌナズナ変異体の原因遺伝子の同定2017

    • Author(s)
      島田 佳南里, 井内 聖, 井内 敦子, 坂本 秀樹, 山田 晃嗣, 刑部 敬史, 刑部 祐里子
    • Organizer
      第58回日本植物生理学会年会
    • Place of Presentation
      鹿児島大学(鹿児島県鹿児島市)
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] 栽培品種トマトAilsa Craigの CRISPR/Cas9システムを用いた新育種技術開発2017

    • Author(s)
      阿部 千尋, 上田 梨紗, 橋本 諒典, 渡辺 崇人, 菅野 茂夫, 刑部 祐里子, 刑部 敬史
    • Organizer
      第58回日本植物生理学会年会
    • Place of Presentation
      鹿児島大学(鹿児島県鹿児島市)
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] CRISPR/Cas9による単為結実トマトの迅速な育種技術の確立2017

    • Author(s)
      上田 梨紗, 阿部 千尋, 石原 諒典 渡辺 崇人, 菅野 茂夫, 刑部 祐里子, 刑部 敬史
    • Organizer
      第58回日本植物生理学会年会
    • Place of Presentation
      鹿児島大学(鹿児島県鹿児島市)
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] Genome editing technology to improve plant environmental response2016

    • Author(s)
      Yuriko Osakabe
    • Organizer
      Latest Advances in Plant Development and Environmental Response 2016, CSH - Asia Meetings
    • Place of Presentation
      ウェスティンホテル淡路(兵庫県淡路市)
    • Year and Date
      2016-11-29
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Site-directed mutagenesis of the tomato IAA9 gene by using the CRISPR/Cas9 system2016

    • Author(s)
      Risa Ueta, Chihiro Abe, Ryosuke Ishihara, Takahito Watanabe, Sigeo Sugano, Yuriko Osakabe and Keishi Osakabe
    • Organizer
      Latest Advances in Plant Development and Environmental Response 2016, CSH - Asia Meetings
    • Place of Presentation
      ウェスティンホテル淡路(兵庫県淡路市)
    • Year and Date
      2016-11-29
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] リンゴゲノムの多様性とゲノム編集による改変2016

    • Author(s)
      西谷 千佳子, 平井 徳美, 小森 貞男, 和田 雅人, 岡田 和馬, 刑部 敬史, 山本 俊哉, 刑部 祐里子
    • Organizer
      日本植物学会第80回大会シンポジウム
    • Place of Presentation
      沖縄コンベンションセンター(沖縄県沖縄市)
    • Year and Date
      2016-09-16
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] CRISPR/Cas9によるトマトIAA9遺伝子を標的としたゲノム編集技術の確立2016

    • Author(s)
      上田 梨紗, 阿部 千尋, 石原 諒典, 渡辺 崇人, 菅野 茂夫, 刑部 祐里子, 刑部 敬史
    • Organizer
      日本植物学会第80回大会
    • Place of Presentation
      沖縄コンベンションセンター(沖縄県沖縄市)
    • Year and Date
      2016-09-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] ゲノム編集技術による植物環境応答能の改変2016

    • Author(s)
      刑部 祐里子, 渡辺 崇人, 菅野 茂夫, 上田 梨紗, 石原 諒典, 篠崎 一雄, 刑部 敬史
    • Organizer
      日本ゲノム編集学会第1回大会
    • Place of Presentation
      広島国際会議場(広島県広島市)
    • Year and Date
      2016-09-06
    • Related Report
      2016 Annual Research Report
  • [Presentation] 栽培品種トマトAilsa Craigの CRISPR/Cas9システムを用いた新育種技術開発2016

    • Author(s)
      阿部 千尋, 上田 梨紗, 石原 諒典, 渡辺 崇人, 菅野 茂夫, 刑部 祐里子, 刑部 敬史
    • Organizer
      日本ゲノム編集学会第1回大会
    • Place of Presentation
      広島国際会議場(広島県広島市)
    • Year and Date
      2016-09-06
    • Related Report
      2016 Annual Research Report
  • [Presentation] CRISPR/Cas9によるトマトIAA9遺伝子を標的としたゲノム編集技術の確立2016

    • Author(s)
      上田 梨紗, 阿部 千尋, 石原 諒典, 渡辺 崇人, 菅野 茂夫, 刑部 祐里子, 刑部 敬史
    • Organizer
      日本ゲノム編集学会第1回大会
    • Place of Presentation
      広島国際会議場(広島県広島市)
    • Year and Date
      2016-09-06
    • Related Report
      2016 Annual Research Report
  • [Presentation] CRISPR/Cas9によるシロイヌナズ ナ環境ストレス応答性遺伝子のゲ ノム編集2016

    • Author(s)
      刑部 祐里子, 菅野 茂夫, 渡辺 崇人, 上田 梨紗, 石原 諒典, 篠崎 一雄, 刑部 敬史
    • Organizer
      第57回日本植物生理学会大会
    • Place of Presentation
      岩手大学(岩手県・盛岡市)
    • Year and Date
      2016-03-20
    • Related Report
      2015 Research-status Report
  • [Presentation] 高効率 CRISPR/Cas9による SlIAA9 ノックアウトトマトの作出2016

    • Author(s)
      上田 梨紗, 阿部 千尋, 石原 諒典, 渡辺 崇人, 菅野 茂夫, 宮脇 克行, 野地 澄晴, 刑部 祐里子, 刑部 敬史
    • Organizer
      第57回日本植物生理学会大会
    • Place of Presentation
      岩手大学(岩手県・盛岡市)
    • Year and Date
      2016-03-20
    • Related Report
      2015 Research-status Report
  • [Presentation] 防御応答活性化時における植物の糖吸収制御2016

    • Author(s)
      山田 晃嗣, 刑部 敬史, 刑部 祐里子
    • Organizer
      第3回日本生物工学会西日本支部講演会
    • Place of Presentation
      徳島大学(徳島県徳島市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 栽培品種トマトAilsa Craigの CRISPR/Cas9システムを用いた新育種技術開発2016

    • Author(s)
      阿部 千尋, 上田 梨紗, 橋本 諒典, 渡辺 崇人, 菅野 茂夫, 刑部 祐里子, 刑部 敬史
    • Organizer
      第3回日本生物工学会西日本支部講演会
    • Place of Presentation
      徳島大学(徳島県徳島市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] CRISPR/Cas9によるトマトIAA9遺伝子を標的としたゲノム編集技術の確立2016

    • Author(s)
      上田 梨紗, 阿部 千尋, 橋本 諒典, 渡辺 崇人, 菅野 茂夫, 刑部 祐里子, 刑部 敬史
    • Organizer
      第3回日本生物工学会西日本支部講演会
    • Place of Presentation
      徳島大学(徳島県徳島市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] CRISPR/Cas9によるトマトIAA9 遺伝子を標的としたゲノム編集技術の確立2015

    • Author(s)
      上田 梨紗, 石原 諒典, 阿部 千尋, 渡辺 崇人, 菅野 茂夫, 宮脇 克行, 野地 澄晴, 刑部 祐里子, 刑部 敬史
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県・神戸市)
    • Year and Date
      2015-12-04
    • Related Report
      2015 Research-status Report
  • [Presentation] RISPRの植物研究への応用- CRISPR/Cas9による植物ゲノム編集技術開発2015

    • Author(s)
      刑部 祐里子
    • Organizer
      学術振興会植物バイオ第160委員会 第10回研究会「ゲノム編集研究の現状と産業応用の可能性」
    • Place of Presentation
      千里ライフセンター(大阪府・大阪市)
    • Year and Date
      2015-07-30
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Genetic Engineering of Abiotic Stress Response and Growth in Plants2015

    • Author(s)
      Yuriko Osakabe
    • Organizer
      26 th International Conference on Arabidopsis Research
    • Place of Presentation
      Paris (France)
    • Year and Date
      2015-07-09
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] CRISPR/Cas9による植物ゲノム編集技術開発と環境応答能の改変2015

    • Author(s)
      刑部 祐里子、菅野茂夫、篠崎一雄、野地澄晴、刑部敬史
    • Organizer
      第 56 回日本植物生理学会年会
    • Place of Presentation
      東京農大
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Research-status Report
  • [Presentation] 植物ゲノム編集による環境応答能の改変2015

    • Author(s)
      刑部祐里子
    • Organizer
      大阪大学第8回国際環境生物資源学会シンポジウム “Exploring the global sustainability -Advances in Plant Biotechnology for Agriculture in Semi-arid land”
    • Place of Presentation
      大阪大学
    • Year and Date
      2015-03-03 – 2015-03-04
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 植物ゲノム編集による植物環境応答能の改変2015

    • Author(s)
      刑部祐里子
    • Organizer
      徳島大学農工商連携セミナー
    • Place of Presentation
      徳島大学
    • Year and Date
      2015-01-09
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Genetic Engineering of Abiotic Stress Response and Plant Growth in Arabidopsis2014

    • Author(s)
      Osakabe Y,, Shinozaki, K.
    • Organizer
      International Conference on Arabidopsis Research (ICAR2014)
    • Place of Presentation
      University of British Columbia in Vancouver, Canada
    • Year and Date
      2014-07-28 – 2014-08-01
    • Related Report
      2014 Research-status Report
    • Invited
  • [Book] 実験医学増刊「All Aboutゲノム編集」2016

    • Author(s)
      刑部 祐里子, 刑部 敬史
    • Total Pages
      233
    • Publisher
      羊土社
    • Related Report
      2016 Annual Research Report
  • [Book] 「第11章 植物でのゲノム編集」論文だけではわからないゲノム編集成功の秘訣Q&A2015

    • Author(s)
      安本周平、關光、刑部祐里子、刑部敬史、村中俊哉
    • Total Pages
      17
    • Publisher
      羊土社
    • Related Report
      2015 Research-status Report
  • [Book] 「人工ヌクレアーゼを用いた植物の遺伝子変異導入技術への応用展開」進化するゲノム編集技術2015

    • Author(s)
      刑部祐里子、菅野茂夫、刑部敬史
    • Total Pages
      5
    • Publisher
      エヌ・ティー・エス
    • Related Report
      2015 Research-status Report
  • [Book] “Genome editing in higher plants” in “Targeted Genome Editing Using Engineered Nucleases: ZFNs, TALENs, and the CRISPR/Cas9 System”2015

    • Author(s)
      Osakabe, Y., Osakabe, K
    • Total Pages
      9
    • Publisher
      Springer -Verlag
    • Related Report
      2015 Research-status Report
  • [Book] “Genome editing in higher plants” in “Targeted Genome Editing Using Engineered Nucleases: ZFNs, TALENs, and the CRISPR/Cas9 System” Ymamoto T. (ed),2014

    • Author(s)
      Osakabe, Y., Osakabe, K
    • Total Pages
      205
    • Publisher
      Springer -Verlag, Germany.
    • Related Report
      2014 Research-status Report
  • [Remarks] 徳島大学生物資源産業学部生物育種生産学分野

    • URL

      http://www.plantbio.bb.tokushima-u.ac.jp

    • Related Report
      2016 Annual Research Report
  • [Remarks] 徳島大学 教育研究者綜覧 准教授:刑部祐里子

    • URL

      http://pub2.db.tokushima-u.ac.jp/ERD/person/289666/work-ja.html

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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