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Transmission of structural changes from catalytic site to transport sites in sarcoplasmic reticulum Ca2+-ATPase

Research Project

Project/Area Number 26440017
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionAsahikawa Medical College

Principal Investigator

DAIHO TAKASHI  旭川医科大学, 医学部, 准教授 (90207267)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsカルシウムポンプ / 筋小胞体 / ATPアーゼ / リン酸化中間体 / 能動輸送 / グリシン / 異性化 / gating / エネルギー共役 / 部位特異的変異 / ドメイン / カチオン輸送 / 変異体 / 構造変化 / Ca / nanodisc / エネルギー / 酵素 / P型 / ATPase
Outline of Final Research Achievements

Ca2+ pump transports Ca2+ at transport sites of membrane domain coupled to ATP hydrolysis at catalytic site of cytoplasmic domain. The structural roles of M2 helix connecting these domains were investigated by use of site-directed mutagenesis. The results indicated that cytoplasmic region (M2c) and membrane region (M2m) of M2 and junctional loop to cytoplasmic domain have specific functions at specific reaction steps, which enable transmission of structural changes between these domains. The functional roles of Gly105 at connecting region of M2c-M2m were investigated by site-directed substitutions. The results indicated that in the phosphorylated-intermediate isomerization Gly105 with its flexibility absorbs distortion of M2 caused by large structural changes at cytoplasmic domain, and that this enables proper Ca2+-gating and coupled transport.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (24 results)

All 2017 2016 2015 2014 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 4 results) Presentation (19 results) (of which Invited: 2 results) Remarks (1 results)

  • [Journal Article] Membrane Perturbation of ADP-insensitive Phosphoenzyme of Ca2+-ATPase Modifies Gathering of Transmembrane Helix M2 with Cytoplasmic Domains and Luminal Gating2017

    • Author(s)
      Stefania Danko, Kazuo Yamasaki1, Takashi Daiho1, and Hiroshi Suzuki
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 1-12

    • DOI

      10.1038/srep41172

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Glycine 105 as Pivot for a Critical Knee-like Joint between Cytoplasmic and Transmembrane Segments of Second Transmembrane Helix in Ca2+-ATPase2016

    • Author(s)
      Takashi Daiho1, Kazuo Yamasaki, Stefania Danko, and Hiroshi Suzuki
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 291 Issue: 47 Pages: 24688-24701

    • DOI

      10.1074/jbc.m116.759704

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Assembly of a Tyr122 Hydrophobic Cluster in Sarcoplasmic Reticulum Ca2+-ATPase Synchronizes Ca2+ Affinity Reduction and Release with Phosphoenzyme Isomerization2015

    • Author(s)
      Yamasaki K., Daiho T., Danko S., and Suzuki H.
    • Journal Title

      Journal of Biological Chemistry

      Volume: 290 Issue: 46 Pages: 27868-27879

    • DOI

      10.1074/jbc.m115.693770

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Second Transmembrane Helix (M2) and Long-range Coupling in Ca2+-ATPase2014

    • Author(s)
      Takashi Daiho, Kazuo Yamasaki, Stefania Danko, Hiroshi Suzuki
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 289 Issue: 45 Pages: 31241-31252

    • DOI

      10.1074/jbc.m114.584086

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Caポンプのエネルギー共役;M2-helix膜貫通部分(M2m)と細胞質部分(M2c)をつなぐGly105の柔軟性の機能2016

    • Author(s)
      大保 貴嗣、山崎和生、Stefania Danko、鈴木 裕
    • Organizer
      日本生体エネルギー研究会第42回討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2016-12-19
    • Related Report
      2016 Annual Research Report
  • [Presentation] 脂質ヘッドグループが筋小胞体カルシウムポンプ活性に及ぼす影響―ナノディスク組み込み標品を用いて―2016

    • Author(s)
      山崎和生、大保貴嗣、Danko Stefania、鈴木裕
    • Organizer
      日本生体エネルギー研究会第42回討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2016-12-19
    • Related Report
      2016 Annual Research Report
  • [Presentation] Membrane Perturbation of ADP-insensitive Phosphoenzyme of Ca2+-ATPase Modifies Gathering of Transmembrane Helix M2 with Cytoplasmic Domains and Luminal Gating2016

    • Author(s)
      Stefania Danko, Kazuo Yamasaki, Takashi Daiho, and Hiroshi Suzuki
    • Organizer
      日本生体エネルギー研究会第42回討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2016-12-19
    • Related Report
      2016 Annual Research Report
  • [Presentation] 筋小胞体Ca2+ポンプM2ヘリックスの膜貫通部分と細胞質部分の連結領域:エネルギー共役における役割2016

    • Author(s)
      大保貴嗣, 山崎和生, ダンコ ステファニア, 鈴木裕
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] ナノディスクに組み込んだ標品を用いた筋小胞体Ca2+-ATPaseのEP転換ステップに及ぼす脂質組成及びA23187の影響の解析2016

    • Author(s)
      山崎和生, 大保貴嗣, Danko Stefania, 鈴木裕
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Caポンプの素過程構造-機能連関:部位特異的変異、速度論、および中間体・遷移状態捕捉による解析2016

    • Author(s)
      鈴木裕, 大保貴嗣, 山崎和生, Danko Stefania
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 筋小胞体Ca2+ポンプのエネルギー共役におけるM2 ヘリックス膜貫通部分(M2m)と細胞質部分(M2cyt)の連結領域の役割2015

    • Author(s)
      大保 貴嗣
    • Organizer
      日本生体エネルギー研究会 第41回討論会
    • Place of Presentation
      東京
    • Year and Date
      2015-12-22
    • Related Report
      2015 Research-status Report
  • [Presentation] ナノディスクへ組み込んだ筋小胞体カルシウムポンプを用いたタンパク質―脂質相互作用の解析2015

    • Author(s)
      山崎 和生
    • Organizer
      日本生体エネルギー研究会 第41回討論会
    • Place of Presentation
      東京
    • Year and Date
      2015-12-22
    • Related Report
      2015 Research-status Report
  • [Presentation] 筋小胞体Ca2+ポンプのエネルギー共役におけるM2ヘリックス膜貫通部分(M2m)と細胞質部分(M2cyt)の連結領域の役割2015

    • Author(s)
      大保 貴嗣
    • Organizer
      第88回日本生化学会第38回日本分子生物学会合同年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] 筋小胞体Ca2+-ATPaseのEP転換ステップにおけるTyr122-Hydorophobic clusterの集合過程とエネルギー共役2015

    • Author(s)
      山崎 和生
    • Organizer
      第88回日本生化学会第38回日本分子生物学会合同年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-02
    • Related Report
      2015 Research-status Report
  • [Presentation] Ca2+-ATPaseの触媒部位と輸送部位間のM2ヘリックスを介したロングレンジ共役2015

    • Author(s)
      大保 貴嗣
    • Organizer
      日本生物物理学会 第53回年会
    • Place of Presentation
      金沢
    • Year and Date
      2015-09-15
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 筋小胞体Ca2+-ATPaseの第2膜貫通ヘリックス(M2)とロングレンジの共役2014

    • Author(s)
      大保 貴嗣
    • Organizer
      日本生体エネルギー研究会 第40回討論会
    • Place of Presentation
      松山
    • Year and Date
      2014-12-11 – 2014-12-13
    • Related Report
      2014 Research-status Report
  • [Presentation] 筋小胞体カルシウムポンプのEP転換とカルシウム放出の共役機構におけるTyr122-hydrophobic clusterの役割2014

    • Author(s)
      山崎 和生
    • Organizer
      日本生体エネルギー研究会 第40回討論会
    • Place of Presentation
      松山
    • Year and Date
      2014-12-11 – 2014-12-13
    • Related Report
      2014 Research-status Report
  • [Presentation] 1分子蛍光観察によるCa2+-ATPaseの数と立体構造変化検出の試み2014

    • Author(s)
      小島 知樹
    • Organizer
      日本生体エネルギー研究会 第40回討論会
    • Place of Presentation
      松山
    • Year and Date
      2014-12-11 – 2014-12-13
    • Related Report
      2014 Research-status Report
  • [Presentation] Ca2+-ATPaseの第2膜貫通ヘリックス(M2)とロングレンジの共役2014

    • Author(s)
      大保 貴嗣
    • Organizer
      日本生化学会 第87回大会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Research-status Report
  • [Presentation] ナノディスクに組み込んだ筋小胞体Ca2+-ATPaseの活性に対する脂質ヘッドグループの影響の解析2014

    • Author(s)
      山崎 和生
    • Organizer
      日本生化学会 第87回大会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Second Transmembrane Helix (M2) and Long-range Coupling in Ca2+-ATPase2014

    • Author(s)
      Takashi Daiho
    • Organizer
      日本生物物理学会 第52回年会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] Long-range Coupling between Catalytic and Transport Sites via Second Transmembrane Helix (M2) in E2P Hydrolysis and E2-E1 Transition of Ca2+-ATPase2014

    • Author(s)
      Takashi Daiho
    • Organizer
      Na,K-ATPase and Related Transport ATPases: Structure, Mechanism, Cell Biology, Health and Disease
    • Place of Presentation
      Lunteren, The Netherlands
    • Year and Date
      2014-08-30 – 2014-09-05
    • Related Report
      2014 Research-status Report
  • [Presentation] A New Method for Ca2+-binding Measurement Applicable to a Small Quantity of Ca2+-ATPase: Transient E2P with Bound Ca2+ and Role of Leu119 on M2 in Ca2+-affinity Reduction and Ca2+ Release2014

    • Author(s)
      Kazuo Yamasaki
    • Organizer
      Na,K-ATPase and Related Transport ATPases: Structure, Mechanism, Cell Biology, Health and Disease
    • Place of Presentation
      Lunteren, The Netherlands
    • Year and Date
      2014-08-30 – 2014-09-05
    • Related Report
      2014 Research-status Report
  • [Remarks] 旭川医科大学 生化学講座機能分子科学分野 ホームページ

    • URL

      http://www.asahikawa-med.ac.jp/dept/mc/biochem2/

    • Related Report
      2016 Annual Research Report 2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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