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Analysis of molecular association and dissociation mechanism in replication restart

Research Project

Project/Area Number 26440031
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionKyushu University

Principal Investigator

Abe Yoshito  九州大学, 薬学研究院, 准教授 (60315091)

Co-Investigator(Kenkyū-buntansha) 片山 勉  九州大学, 薬学研究院, 教授 (70264059)
Research Collaborator UEDA Tadashi  九州大学, 大学院薬学研究院, 教授
SHIROISHI Mitsunori  九州大学, 大学院薬学研究院, 助教
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywords複製再開始プライモソーム / タンパク質-DNA複合体 / タンパク質構造 / PriC / PriB / DnaT / DnaB / 蛋白質構造 / 蛋白質-DNA複合体
Outline of Final Research Achievements

In DNA replication restart, systematic association and dissociation of several proteins are occurred on DNA. In this application, we performed the structure and function analysis of the proteins (PriA、PriB、DnaT、PriC、DnaB ) involved in replication restart in Escherichia coli. In DnaT, we examined the oligomeric state of the N-terminal domain and the ssDNA (singles-stranded DNA) dissociation activity from PriB-ssDNA (singles-stranded DNA) complex by the linker region between the N-terminal and C-terminal domains, which is involved in the binding to PriB. Moreover, we examined the interaction between PriC and DnaB. Together with these results, we contributed elucidating the mechanism in replication restart.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (21 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (4 results) (of which Peer Reviewed: 3 results,  Acknowledgement Compliant: 3 results,  Open Access: 1 results) Presentation (16 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results)

  • [Int'l Joint Research] シンガポール国際大学(シンガポール)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Functional analysis of CedA based on its structure: residues important in binding of DNA and RNA polymerase and in the cell division regulation2016

    • Author(s)
      Abe Y, Fujisaki N, Miyoshi T, Watanabe N, Katayama T, Ueda T
    • Journal Title

      Journal of Biochemistry

      Volume: 159 Issue: 2 Pages: 217-223

    • DOI

      10.1093/jb/mvv096

    • NAID

      40020763252

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Basic and aromatic residues in the C-terminal domain of PriC are involved in ssDNA and SSB binding2015

    • Author(s)
      Aramaki, T, Abe, Y, Furutani, K, Katayama T, Ueda T
    • Journal Title

      Journal of Biochemistry

      Volume: in press

    • NAID

      40020489279

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Helicase and its interacting factors: regulation mechanism, characterization, structure, and application for drug design2015

    • Author(s)
      Huang CY, Abe Y, Ding H, Chung IF.
    • Journal Title

      Biomed Res Int

      Volume: 2015 Pages: 909047-909047

    • DOI

      10.1155/2015/909047

    • Related Report
      2014 Research-status Report
    • Open Access
  • [Journal Article] Structure and mechanism of the primosome protein DnaT: functional structures for homotrimerization, dissociation of ssDNA from PriB-ssDNA complex and formation of DnaT-ssDNA complex2014

    • Author(s)
      Fujiyama S, Abe Y, Tani J, Urabe M, Kenji S, Aramaki T, Katayama T, Ueda T
    • Journal Title

      FEBS journal

      Volume: 281 Issue: 23 Pages: 5356-5370

    • DOI

      10.1111/febs.13080

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Analysis of DnaT oligomeric structure in Escherichia coli replication restart primosome2017

    • Author(s)
      池田陽平, 藤山紗希, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      KAIST-Kyushu University Joint Seminar
    • Place of Presentation
      福岡
    • Year and Date
      2017-01-20
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 大腸菌DNA複製再開始タンパク質PriB・DnaTの構造を基盤とした相互作用解析2016

    • Author(s)
      藤山 紗希, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      第89回日本生化学会年会
    • Place of Presentation
      仙台
    • Year and Date
      2016-09-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] NMR Analysis of an Interaction between PriB and DnaT on Bacterial Replication Restart Primosome2016

    • Author(s)
      藤山 紗希, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      The XXVIIth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      京都
    • Year and Date
      2016-07-25
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 大腸菌 DNA 複製再開始因子 DnaT の多量体構造解析2016

    • Author(s)
      池田 陽平, 藤山紗希, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2016-06-08
    • Related Report
      2016 Annual Research Report
  • [Presentation] 大腸菌 DNA 複製再開始因子 DnaT の構造と機能2016

    • Author(s)
      阿部 義人, 藤山 紗希, 池田 陽平, 片山 勉, 植田 正
    • Organizer
      第13回21世紀大腸菌研究会
    • Place of Presentation
      熊本
    • Year and Date
      2016-06-02
    • Related Report
      2016 Annual Research Report
  • [Presentation] 大腸菌 DNA 複製再開始タンパク質 PriB・DnaTの相互作用機序の解析2016

    • Author(s)
      藤山紗希, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      日本生化学会九州支部会
    • Place of Presentation
      鹿児島
    • Year and Date
      2016-05-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] utational analysis of an interaction site between PriB and DnaT on bacterial replication restart2016

    • Author(s)
      藤山紗希, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      KAIST-Kyushu University Joint Seminar
    • Place of Presentation
      熊本
    • Year and Date
      2016-03-18
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Structure basis of replication restart primosome in E. coli2016

    • Author(s)
      阿部 義人
    • Organizer
      第3回生命分子科学研究会
    • Place of Presentation
      北海道
    • Year and Date
      2016-03-15
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 物理化学的手法を用いた大腸菌DNA複製再開始因子PriB・DnaTの相互作用解析2015

    • Author(s)
      藤山紗希, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      日本生化学会
    • Place of Presentation
      兵庫
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] 構造を基盤とした大腸菌DNA複製再開始の分子機構2015

    • Author(s)
      阿部 義人
    • Organizer
      第169委員会 第48回研究会
    • Place of Presentation
      大阪
    • Year and Date
      2015-11-18
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 構造を基盤とした大腸菌DNA複製再開始の分子機構2015

    • Author(s)
      阿部 義人, 藤山紗希, 荒牧峻彦, 片山 勉, 植田 正
    • Organizer
      第39回タンパク質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      大分
    • Year and Date
      2015-09-12
    • Related Report
      2015 Research-status Report
  • [Presentation] NMRを用いた大腸菌DNA複製再開始タンパク質PriB-DnaT間の相互作用解析2015

    • Author(s)
      藤山紗希, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      第13回次世代を担う若手のためのフィジカル・ファーマフォーラム (PPF2015)
    • Place of Presentation
      長崎
    • Year and Date
      2015-08-20
    • Related Report
      2015 Research-status Report
  • [Presentation] 大腸菌DNA複製再開始因子DnaTの構造と機能2015

    • Author(s)
      阿部 義人, 藤山紗希, 片山 勉, 植田 正
    • Organizer
      第42回生体分子科学討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2015-06-12
    • Related Report
      2015 Research-status Report
  • [Presentation] Analysis of interaction between PriB and DnaT at replication restart by mutational and biophysical approaches2014

    • Author(s)
      Saki Fujiyama, Yoshito Abe, Tsutome Katayama, Tadashi Ueda
    • Organizer
      the 9th 3R Symposium
    • Place of Presentation
      静岡
    • Year and Date
      2014-11-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Structure and mechanism of the replication restart primosome proteins2014

    • Author(s)
      Yoshito Abe, Saki Fujiyama, Takahiko Aramaki, Tsutome Katayama, Tadashi Ueda
    • Organizer
      日本生化学会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-17
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 大腸菌DNA複製再開始因子PriBーDnaT間の相互作用部位の同定2014

    • Author(s)
      藤山紗希, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      日本生化学会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-17
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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