• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Structure determination of oligomeric membrane protein involved in forming membrane vesicles and elucidation of the regulation mechanism

Research Project

Project/Area Number 26440034
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionTokyo University of Science (2016)
University of Shizuoka (2014-2015)

Principal Investigator

YOKOYAMA HIDESHI  東京理科大学, 薬学部生命創薬科学科, 准教授 (70433208)

Co-Investigator(Kenkyū-buntansha) 橋本 博  静岡県立大学, 薬学部, 教授 (40336590)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Keywords膜結合プロテアーゼ / ストマチン / OBドメイン / X線結晶構造 / X線結晶構造解析 / X線結晶構造
Outline of Final Research Achievements

In humans, an absence of stomatin is associated with a form of hemolytic anemia known as hereditary stomatocytosis. In this study, I tried to elucidate how the partner protein STOPP (STomatin Operon Partner Protein) regulates the oligomeric protein stomatin. By X-ray crystallography, I elucidated that the protease domain of STOPP could form a different dimeric structure, and that the OB (Oligonucleotide Binding) domain of STOPP could assemble into 12-24 mer multimers based on a dimer as a basic unit. This result indicates that the OB domain functions as a scaffold protein to form the multimeric assembly of STOPP and stomatin. In the future, I want to elucidate the mechanism how hereditary stomatocytosis is developed.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (16 results)

All 2017 2016 2015 2014 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Open Access: 5 results,  Acknowledgement Compliant: 4 results) Presentation (7 results) (of which Invited: 1 results) Remarks (2 results)

  • [Journal Article] Role of the mobility of antigen binding site in high affinity antibody elucidated by surface plasmon resonance.2017

    • Author(s)
      Fukuda N, Suwa Y, Uchida M, Kobashigawa Y, Yokoyama H, Morioka H.
    • Journal Title

      J. Biochem.

      Volume: 161 Issue: 1 Pages: 37-43

    • DOI

      10.1093/jb/mvw050

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of a novel DNA-binding domain of helicase-like transcription factor (HLTF) and its functional implication in DNA damage tolerance.2015

    • Author(s)
      Hishiki, A., Hara, K., Ikegaya, Y., Yokoyama, H., Shimizu, T., Sato, M., Hashimoto, H.
    • Journal Title

      J. Biol. Chem.

      Volume: 290 Issue: 21 Pages: 13215-13223

    • DOI

      10.1074/jbc.m115.643643

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystallographic study of a novel DNA-binding domain of human HLTF involved in the template-switching pathway to avoid the replication arrest caused by DNA damage2015

    • Author(s)
      Yuzu Ikegaya, Kodai Hara, Asami Hishiki, Hideshi Yokoyama, & Hiroshi Hashimoto
    • Journal Title

      Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.

      Volume: 印刷中 Issue: 6 Pages: 668-670

    • DOI

      10.1107/s2053230x15005907

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structural Basis of New Allosteric Inhibition in Kinesin Spindle Protein Eg52015

    • Author(s)
      Yokoyama H, Sawada J, Katoh S, Matsuno K, Ogo N, Ishikawa Y, Hashimoto H, Fujii S, Asai A.
    • Journal Title

      ACS Chem. Biol.

      Volume: 10 Issue: 4 Pages: 1128-1136

    • DOI

      10.1021/cb500939x

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Crystal structure of the stomatin operon partner protein from Pyrococcus horikoshii indicates the formation of a multimeric assembly2014

    • Author(s)
      Yokoyama H. Matsui I.
    • Journal Title

      FEBS Open Bio

      Volume: 4 Issue: 1 Pages: 804-812

    • DOI

      10.1016/j.fob.2014.09.002

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structures and metal-binding properties of Helicobacter pylori neutrophil-activating protein with a di-nuclear ferroxidase center2014

    • Author(s)
      Yokoyama, H. Fujii, S.
    • Journal Title

      Biomolecules

      Volume: 4 Issue: 3 Pages: 600-615

    • DOI

      10.3390/biom4030600

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structural biology of DNA (6-4) photoproducts formed by ultraviolet radiation and interactions with their binding proteins2014

    • Author(s)
      Yokoyama, H. Mizutani, R.
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 15 Issue: 11 Pages: 20321-20338

    • DOI

      10.3390/ijms151120321

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] オリゴペプチド結合タンパク質の精製と結晶化2016

    • Author(s)
      亀井七海、横山英志、小西佳史郎、原幸大、石川吉伸、松井郁夫、Patrick Forterre、橋本博
    • Organizer
      日本薬学会第136年会
    • Place of Presentation
      横浜
    • Year and Date
      2016-03-28
    • Related Report
      2015 Research-status Report
  • [Presentation] X線結晶構造解析による脂質ラフトタンパク質ストマチンと特異的プロテアーゼの機能解明2016

    • Author(s)
      横山英志
    • Organizer
      第60回 日本薬学会関東支部大会
    • Place of Presentation
      東京大学 山上会館(東京都文京区)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 多量体形成脂質ラフトタンパク質ストマチンの結晶学的研究2015

    • Author(s)
      横山英志
    • Organizer
      静岡県立大学 2015 USフォーラム
    • Place of Presentation
      静岡
    • Year and Date
      2015-09-29
    • Related Report
      2015 Research-status Report
  • [Presentation] ストマチンパートナータンパク質の結晶構造と多量体形成2015

    • Author(s)
      横山英志、松井郁夫
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢
    • Year and Date
      2015-09-15
    • Related Report
      2015 Research-status Report
  • [Presentation] 膜タンパク質ストマチン特異的切断プロテアーゼの構造生物学的研究2014

    • Author(s)
      鈴木佳奈、横山英志、原幸大、松井郁夫、橋本博
    • Organizer
      平成26年度日本結晶学会年会
    • Place of Presentation
      東京
    • Year and Date
      2014-11-01 – 2014-11-03
    • Related Report
      2014 Research-status Report
  • [Presentation] 膜タンパク質ストマチンのパートナータンパク質の多量体形成2014

    • Author(s)
      横山英志、松井えり子、平本加奈、松井郁夫
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-16
    • Related Report
      2014 Research-status Report
  • [Presentation] 耐熱性ストマチン特異的切断プロテアーゼの構造と機能解析2014

    • Author(s)
      横山英志、小林大介、瀧澤直人、藤井敏、松井郁夫
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-25
    • Related Report
      2014 Research-status Report
  • [Remarks] 研究紹介

    • URL

      http://www.rs.tus.ac.jp/yokoyama/index.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 研究紹介

    • URL

      http://w3pharm.u-shizuoka-ken.ac.jp/bukka/yokoyama/index.html

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi