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X-ray and neutron crystallographic structure of copper amine oxidase

Research Project

Project/Area Number 26440037
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka Medical College

Principal Investigator

Murakawa Takeshi  大阪医科大学, 医学部, 助教 (90445990)

Co-Investigator(Kenkyū-buntansha) 林 秀行  大阪医科大学, 医学部, 教授 (00183913)
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords中性子結晶構造解析 / X線結晶構造解析 / トパキノン / 酵素 / 中性子結晶構造回析 / X線結晶構造回析 / 中性子 / 補酵素 / X線
Outline of Final Research Achievements

Copper amine oxidases (CAOs) catalyze the oxidation of various aliphatic amines to the corresponding aldehydes, ammonia and hydrogen peroxide. We focused on the structural insights into the catalytic mechanism of a CAO from Arthrobacter globiformis (AGAO) using an ultra-high resolution X-ray and neutron crystallography. We determined the structure of oxidized-form (substrate-free form) of AGAO at 1.72/1.14 angstrom by neutron/X-ray crystallography. Based on the precise three-dimensional structure information obtained, we got new knowledge on reaction mechanism accompanied by structural change and fluctuation of AGAO. Further, we also obtained the neutron and X-ray diffraction data of semiquinone intermediate. We are currently refining the structure.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (8 results)

All 2017 2016 2015 2014

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (7 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results)

  • [Journal Article] Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.2015

    • Author(s)
      Murakawa, T., Hamaguchi, A., Nakanishi, S., Kataoka, M., Nakai, T., Kawano, Y., Yamaguchi, H., Hayashi, H., Tanizawa, K., and Okajima, T.
    • Journal Title

      J. Biol. Chem.

      Volume: 290 Issue: 38 Pages: 23094-23109

    • DOI

      10.1074/jbc.m115.662726

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Presentation] 銅含有アミン酸化酵素における触媒反応中のプロトン化状態についての理論的解明2017

    • Author(s)
      庄司光男,村川武志,重田育照,岡島俊英
    • Organizer
      第17回日本蛋白質科学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] X-ray crystallographic structure of semiquinone radical intermediate formed in bacterial copper amine oxidase.2016

    • Author(s)
      Toshihide Okajima, Tadashi Nakai1 , Katsuyuki Tanizawa , Takeshi Murakawa , and Hideyuki Hayashi.
    • Organizer
      ICC05-AEM2016
    • Place of Presentation
      Unazuki, Japan.
    • Year and Date
      2016-09-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 2.Analysis of the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter Globiformis.2016

    • Author(s)
      Hiroshi Yamaguchi, Takeshi Murakawa, Misumi Kataoka, Yoshiaki Kawano, Hideyuki Hayashi, Katsuyuki Tanizawa, and Toshihide Okajima.
    • Organizer
      ISDSB2016
    • Place of Presentation
      Tennessee, USA.
    • Year and Date
      2016-08-07
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 銅含有アミン酸化酵素の大型結晶調製と予備的中性子回折実験2015

    • Author(s)
      村川武志
    • Organizer
      茨城県平成27年度 第3回(第11 回) iBIX 研究会
    • Place of Presentation
      茨城県東海村
    • Year and Date
      2015-10-28
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 銅アミン酸化酵素のTPQ補酵素とその前駆体Tyr残基のコンフォメーション制御の分子機構2014

    • Author(s)
      村川武志,中西将太,元山暁仁,林秀行,谷澤克行,岡島俊英
    • Organizer
      日本生化学会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Conformational flexibility of the topa quinone cofactor in copper amine oxidase revealed by site-specific mutagenesis of the neighboring conserved asparagine residue2014

    • Author(s)
      Takeshi Murakawa, Hideyuki Hayashi, Katsuyuki Tanizawa, Toshihide Okajima
    • Organizer
      ICC-04
    • Place of Presentation
      イタリア,パルマ
    • Year and Date
      2014-08-24 – 2014-08-30
    • Related Report
      2014 Research-status Report
  • [Presentation] 銅アミン酸化酵素のTPQ生成反応と触媒反応における保存性Asn残基の役割2014

    • Author(s)
      村川武志,中西将太,元山暁仁,林秀行,谷澤克行,岡島俊英
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2019-03-29  

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