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Structural studies of a common domain between a regulatory complex involved in DNA methylation and SMC complexes for chromosome maintenance

Research Project

Project/Area Number 26440039
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

KAMADA Katsuhiko  国立研究開発法人理化学研究所, 平野染色体ダイナミクス研究室, 専任研究員 (70360526)

Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords蛋白質複合体 / 染色体凝縮 / X線結晶構造解析 / エピジェネティック / 構造生物学 / 染色体 / 蛋白質間相互作用 / DNAメチル化 / 結晶構造解析
Outline of Final Research Achievements

In recent years, many protein complexes involved in epigenetic gene control were genetically identified. Interestingly, a plant-specific protein complex participating in the regulation contains a hinge-like domain commonly found in proteins, which are involved in eukaryotic chromosome condensation. I investigated the structural relationship of the domain found over these two systems. The crystal structure of the hinge domain of the bacterial SMC protein reveals an asymmetric dimer with a half-opened interface, clarifying involvement of the domain for conformational changes of the overall structure within the SMC complex. I also identified minimal components of the plant-specific complex essential for the stable association to aim further structural analysis.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (14 results)

All 2017 2016 2015 Other

All Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Remarks (3 results)

  • [Journal Article] Combing Chromosomal DNA Mediated by the SMC Complex: Structure and Mechanisms2017

    • Author(s)
      Kamada Katsuhiko、Barilla Daniela
    • Journal Title

      BioEssays

      Volume: 40 Issue: 2 Pages: 1700166-1700166

    • DOI

      10.1002/bies.201700166

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Overall shapes of the SMC-ScpAB complex are determined by balance between constraint and relaxation of its structural parts2017

    • Author(s)
      Kamada K, Suetsugu M, Takada H, Miyata M, Hirano T
    • Journal Title

      Structure

      Volume: 25 Issue: 4 Pages: 603-16

    • DOI

      10.1016/j.str.2017.02.008

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Transition of Overall Structure of the Bacterial SMC Complex2017

    • Author(s)
      Katsuhiko Kamada
    • Organizer
      Gordon Research Conference
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Transition of Overall Structure of the Bacterial SMC Complex2017

    • Author(s)
      Katsuhiko Kamada
    • Organizer
      The second international meeting on SMC proteins Chromosomal organaizers from bacteria to human
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] バクテリアSMC複合体のリング開閉機構2017

    • Author(s)
      鎌田勝彦
    • Organizer
      第11回日本ゲノム微生物学会年会
    • Place of Presentation
      慶応大学(藤沢市)
    • Related Report
      2016 Research-status Report
  • [Presentation] バクテリアSMC複合体の分子機構とダイナミクス2016

    • Author(s)
      鎌田勝彦
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2016-06-07
    • Related Report
      2015 Research-status Report
  • [Presentation] バクテリアSMC複合体のダイナミクス2016

    • Author(s)
      鎌田勝彦
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Related Report
      2016 Research-status Report
  • [Presentation] バクテリアの核様体の維持蛋白質 SMC複合体2016

    • Author(s)
      鎌田勝彦
    • Organizer
      九州大学農学部
    • Place of Presentation
      九州大学農学部(福岡市)
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] バクテリアSMC複合体のリング開閉機構2016

    • Author(s)
      鎌田勝彦
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      仙台国際センター・東北大学(仙台市)
    • Related Report
      2016 Research-status Report
  • [Presentation] バクテリアSMC複合体のリング開閉機構2016

    • Author(s)
      鎌田勝彦
    • Organizer
      2016年度グラム陽性菌ゲノム機能会議
    • Place of Presentation
      KKRホテル熱海(熱海市)
    • Related Report
      2016 Research-status Report
  • [Presentation] SMC蛋白質複合体の変異体解析2015

    • Author(s)
      鎌田勝彦
    • Organizer
      2015 年度グラム陽性菌ゲノム機能会議
    • Place of Presentation
      滋賀県大津市  雄山荘
    • Year and Date
      2015-08-27
    • Related Report
      2015 Research-status Report
  • [Remarks] 平野染色体ダイナミクス研究室 HP 鎌田勝彦

    • URL

      http://www.riken.jp/chromdyna/jp/members/kamadak.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 平野染色体ダイナミクス研究室 鎌田勝彦のHP

    • URL

      http://www.riken.jp/chromdyna/jp/members/kamadak.html

    • Related Report
      2015 Research-status Report
  • [Remarks] 平野染色体ダイナミクス研究室の鎌田勝彦HP

    • URL

      http://www.riken.jp/chromdyna/jp/members/kamadak.html

    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2019-03-29  

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