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Study on the physiological significance and the molecular mechanism of Na+-pumping rhodopsin

Research Project

Project/Area Number 26440042
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Functional biochemistry
Research InstitutionHokkaido University

Principal Investigator

Kikukawa Takashi  北海道大学, 先端生命科学研究院, 講師 (20281842)

Co-Investigator(Kenkyū-buntansha) 宮内 正二  東邦大学, 薬学部, 教授 (30202352)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsロドプシン / ナトリウムポンプ / フォトサイクル / レチナール / 膜蛋白質 / イオンポンプ / 微生物ロドプシン
Outline of Final Research Achievements

Microbial rhodopsins are photoactive membrane proteins containing the chromophore retinal. Upon light absorption, they undergo the cyclic photoreactions and exert respective functions such as various ion transports and the light signal transductions. Here, we performed functional analyses of the outward Na+ pumping rhodopin (NaR). The results are summarized as follows: 1) There exists a cation binding site on the NaR surface. The cation binding distorts the protein structure in the dark state, and then influences the early intermediates formed after photoexcitation. 2) Na+ uptake and release reactions were directly detected by the photo-induced changes of Na+ concentration. These reactions occurred almost simultaneously with the formation and decay of O intermediate, respectively.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (19 results)

All 2016 2015 2014

All Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 5 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (14 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results)

  • [Journal Article] Photochemical characterization of actinorhodopsin and its functional existence in the natural host2016

    • Author(s)
      Nakamura, S., Kikukawa, T., Tamogami, J., Kamiya, M., Aizawa, T., Hahn, M., Ihara, K., Kamo, N., Demura, M.
    • Journal Title

      BBA-BIOENERGETICS

      Volume: 1857 Issue: 12 Pages: 1900-1908

    • DOI

      10.1016/j.bbabio.2016.09.006

    • NAID

      120006366475

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Characterization of a Cyanobacterial Chloride-Pumping Rhodopsin and its Conversion into a Proton Pump2016

    • Author(s)
      Hasemi, T., Kikukawa, T., Kamo, N., Demura, M.
    • Journal Title

      J. Biol. Chem.

      Volume: 291 Issue: 1 Pages: 355-362

    • DOI

      10.1074/jbc.m115.688614

    • NAID

      120005725144

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Probing the Cl--pumping photocycle of pharaonis halorhodopsin: Examinations with bacterioruberin, an intrinsic dye, and membrane potential-induced modulation of the photocycle2015

    • Author(s)
      Kikukawa, T., Kusakabe, C., Kokubo, A., Tsukamoto, T., Kamiya, M., Aizawa, T., Ihara, K., Kamo, N., Demura, M.
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1847 Issue: 8 Pages: 748-758

    • DOI

      10.1016/j.bbabio.2015.05.002

    • NAID

      120005820700

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] The effects of chloride ion binding on the photochemical properties of sensory rhodopsin II from Natronomonas pharaonis2014

    • Author(s)
      Tamogami, J., Iwano, K., Matsuyama, A., Kikukawa, T., Demura, M., Nara, T., Kamo, N.
    • Journal Title

      J. Photochem. Photobiol. Sci.

      Volume: 141 Pages: 192-201

    • DOI

      10.1016/j.jphotobiol.2014.10.010

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide2014

    • Author(s)
      Takahiro Kushibiki, Masakatsu Kamiya, Tomoyasu Aizawa, Yasuhiro Kumaki, Takashi Kikukawa, Mineyuki Mizuguchi, Makoto Demura, Shun-ichiro Kawabata, Keiichi Kawano
    • Journal Title

      Biochimica et Biophysica Acta - Proteins and Proteomics

      Volume: 1,844 Issue: 3 Pages: 527-534

    • DOI

      10.1016/j.bbapap.2013.12.017

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] Solid-state NMR analysis of sodium ion pump rhodopsin and its Na+-binding2016

    • Author(s)
      Tamaki, H., Saito, Y., Egawa, A., Kikukawa, T., Fujiwara, T., Demura, M.
    • Organizer
      17th International Conference on Retinal Proteins
    • Place of Presentation
      ポツダム(ドイツ)
    • Year and Date
      2016-10-03
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Replacements of “donor” residues in the light- driven H+-pump rhodopsins2016

    • Author(s)
      Nishiya, K., Sasaki, S., Tamogami, J., Kikukawa, T., Aizawa, T., Kamo, N., Demura, M.
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県・筑波)
    • Related Report
      2016 Annual Research Report
  • [Presentation] Photocycle of Mastigocladopsis repens halorhodopsin and the role of its TSD motif2016

    • Author(s)
      Hasemi, T., Kikukawa, T., Aizawa, T., Kamo, N., Demura, M.
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県・筑波)
    • Related Report
      2016 Annual Research Report
  • [Presentation] Light-induced conformational change of inward Cl- pump halorhodopsin2016

    • Author(s)
      Kikukawa, T., Kamo, N., Demura, M.
    • Organizer
      13th International Conference on Flow Dynamics
    • Place of Presentation
      仙台国際センター(宮城県・仙台)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Inversion of sequence and direction of the proton transfer in proteorhodopsin at high pH2015

    • Author(s)
      Tamogami, J., Kikukawa, T., Nara, T., Demura, M., Muneyuki, E., Kamo, N.
    • Organizer
      The 2015 International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu (USA)
    • Year and Date
      2015-12-19
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Conversion of a novel chloride pumping rhodopsin to a proton pump with a single amino acid replacement2015

    • Author(s)
      Hasemi, T., Kikukawa, T., Kamiya, M., Aizawa, T., Kamo, N., Demura, M.
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県・金沢)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
  • [Presentation] Functionally important residues in the cytoplasmic half channel of light-driven Cl- pump Natronomonas pharaonis halorhodopsin2015

    • Author(s)
      Shimosaka, A., Kikukawa, T., Kamiya, M., Aizawa, T., Kamo, N., Demura, M.
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県・金沢)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
  • [Presentation] Photochemistry of the H+-pumping rhodopsin from freshwater Actinobacteria2014

    • Author(s)
      Nakamura, S., Kikukawa, T., Kamiya, M., Aizawa, T., Hahn, M.W., Kamo, N., Demura, M.
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Research-status Report
  • [Presentation] The importance of Thr218 for Cl--pumping photocycle of Natronomonas pharaonis halorhodopsin2014

    • Author(s)
      Shibasaki, K., Shigemura, H., Kikukawa, T., Kamiya, M., Aizawa, T., Kamo, N., Demura, M.
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Research-status Report
  • [Presentation] Proton Transfer Reactions of Anabaena Sensory Rhodopsin2014

    • Author(s)
      Hasemi, T., Kikukawa, T., Kamiya, M., Aizawa, T., Jung, K.H., Kamo, N., Demura, M.
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Research-status Report
  • [Presentation] Acetabularia rhodopsin II (ARII)のAsp81変異体による一過性光誘起電流2014

    • Author(s)
      宮内正二, 下野和実, 菊川峰志, 出村誠, Jung, K.H., 加茂直樹
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-26
    • Related Report
      2014 Research-status Report
  • [Presentation] 固体NMR法によるタンパク質立体構造解析への常磁性緩和促進の応用2014

    • Author(s)
      田巻初, 江川文子, 木戸浩貴, 亀田倫史, 神谷昌克, 菊川峰志, 相沢智康, 藤原敏道, 出村誠
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-26
    • Related Report
      2014 Research-status Report
  • [Presentation] Truepera radiovictrix由来Na+ポンプ型ロドプシンの機能解析2014

    • Author(s)
      後藤歌月, 菊川峰志, 長谷見崇俊, 斉藤優太, 神谷昌克, 相沢智康, 加茂直樹, 出村誠
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-25
    • Related Report
      2014 Research-status Report
  • [Presentation] アクチノロドプシンのHis-62残基の光化学反応における役割2014

    • Author(s)
      中村槙太郎, 菊川峰志, 神谷昌克, 相沢智康, Hahn Martin W, 加茂直樹, 出村誠
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-25
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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