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The gout medicine which has strong effects on mammalian XOR but not on bacterial XOR: dynamics of the interaction between enzyme XOR and its inhibitor BOF

Research Project

Project/Area Number 26440081
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionNippon Medical School

Principal Investigator

Kikuchi Hiroto  日本医科大学, 医学部, 准教授 (00224907)

Co-Investigator(Kenkyū-buntansha) 古田 忠臣  東京工業大学, 生命理工学院, 助教 (10431834)
岡本 研  日本医科大学, 医学部, 准教授 (60267143)
Co-Investigator(Renkei-kenkyūsha) FUJISAKI Hiroshi  日本医科大学, 医学部, 准教授 (60573243)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2015: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2014: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Keywords酸化還元酵素 / 構造・機能予測 / 分子動力学 / キサンチン / 痛風治療薬 / 阻害剤 / フェブキソスタット / BOF / 創薬
Outline of Final Research Achievements

Xanthine oxidoreductase (XOR) physiologically catalyzes the hydroxylation of hypoxanthine to xanthine, followed by the catalysis of the hydroxylation of xanthine to uric acid. As excess production of uric acid leads to gout, human XOR has been a target of anti-gout drugs. XOR is found in a wide range of organisms from bacteria to human, and the substrate-binding pockets of mammalian and bacterial XOR are well-conserved as regards catalytically important residues and three-dimensional structure. In this research, we found in terms of enzymatic experiments that inhibitor BOF-4272 (BOF) inhibits mammalian XOR but not bacterial XOR. This means that it is difficult to understand the inhibitory mechanism of BOF from the view point of only the static three-dimensional structure of XOR. However, we succeeded in reproducing the experiment results using MD calculations from the view point of dynamics.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (12 results)

All 2017 2016 2015 2014

All Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (8 results) (of which Invited: 1 results) Book (1 results)

  • [Journal Article] Kirkwood-Buff integrals for aqueous urea solutions based upon the quantum chemical electrostatic potential and interaction energies2016

    • Author(s)
      S Chiba, T Furuta, S Shimizu
    • Journal Title

      J. of Phys. Chem. B

      Volume: 120 Issue: 31 Pages: 7714-7723

    • DOI

      10.1021/acs.jpcb.6b05611

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Effects of Xanthine Oxidoreductase Inhibitors on Oxidative Stress Markers following Global Brain Ischemia Reperfusion Injury in C57BL/6 Mice2015

    • Author(s)
      M. Yamaguchi,K. Okamoto, T. Kusano, Y. Matsuda, G. Suzuki, A. Fuse, H. Yokota.
    • Journal Title

      PLoS One

      Volume: 10 Issue: 7 Pages: e0133980-e0133980

    • DOI

      10.1371/journal.pone.0133980

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Mechanistic insights into xanthine oxidoreductase from development studies of candidate drugs to treat hyperuricemia and gout.2015

    • Author(s)
      Nishino T, Okamoto K.
    • Journal Title

      J Biol Inorg Chem.

      Volume: 20 Issue: 2 Pages: 195-207

    • DOI

      10.1007/s00775-014-1210-x

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] ヒトには効くがバクテリアには効かない痛風薬 ー 酵素と阻害剤BOFとの相互作用ダイナミクス ー2016

    • Author(s)
      菊地 浩人、藤崎 弘士、古田 忠臣、岡本 研、西野 武士
    • Organizer
      日本物理学会2016年秋季大会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] キサンチン酸化還元酵素基質結合ポケットの動的解析2016

    • Author(s)
      岡本研、菊地浩人、藤崎弘士、古田忠臣、西野武士
    • Organizer
      第49回日本痛風・核酸代謝学会総会
    • Place of Presentation
      大阪
    • Year and Date
      2016-02-18
    • Related Report
      2015 Research-status Report
  • [Presentation] キサンチン酸化還元酵素の基質ガイド機構の解析2015

    • Author(s)
      岡本 研、菊地 浩人、藤崎 弘士、古田 忠臣、西野 武士
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] キサンチン脱水素酵素(XDH)のNAD+ の結合による反応調節2015

    • Author(s)
      川口 裕子、西野 朋子、岡本 研、西野 武士
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] On the motion of a loop located in the entrance to the ligand-binding pocket of bacterial XOR with the inhibitor BOF2015

    • Author(s)
      H. Kikuchi, H. Fujisaki, T. Furuta, K. Okamoto, T. Nishino.
    • Organizer
      53rd Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Kanazawa
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
  • [Presentation] The loop opening motion of the bacterial XOR with the inhibitor BOF: molecular dynamics study2014

    • Author(s)
      H. Kikuchi, H. Fujisaki, T. Furuta, K. Okamoto, T. Nishino
    • Organizer
      10th Congress of the World Association of Theoretical and Computational Chemists
    • Place of Presentation
      Santiago, Chile
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Research-status Report
  • [Presentation] The gate opening motion of xanthine binding pocket of XOR2014

    • Author(s)
      K. Okamoto, H. Kikuchi, H. Fujisaki, T. Furuta, S. Leimkühler, T. Nishino
    • Organizer
      International simposium of Flavins and Flavoproteins
    • Place of Presentation
      Phechaburi, Thailand
    • Year and Date
      2014-07-27 – 2014-08-01
    • Related Report
      2014 Research-status Report
  • [Presentation] 痛風治療薬と標的酵素の相互作用解析-構造情報は臨床にどう生かされているのか-2014

    • Author(s)
      岡本研
    • Organizer
      生化学会関東部会
    • Place of Presentation
      茨城大学、水戸
    • Year and Date
      2014-06-14
    • Related Report
      2014 Research-status Report
    • Invited
  • [Book] RSC Metallobiology Series No. 5, Molybdenum and Tungsten Enzymes:Biochemistry Edited by Russ Hille, Carola Schulzke, and Martin L.Kirk2017

    • Author(s)
      Takeshi Nishino, Ken Okamoto, and Silke Leimkuhler
    • Publisher
      the Royal Society of Chemistry
    • Related Report
      2016 Annual Research Report

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Published: 2014-04-04   Modified: 2018-03-22  

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