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Building Comparative Genome Database for Invertebrate Species

Research Project

Project/Area Number 26440193
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Evolutionary biology
Research InstitutionHokkaido University

Principal Investigator

Endo Toshinori  北海道大学, 情報科学研究科, 教授 (00323692)

Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords比較ゲノム解析 / ゲノムスペクトル / 比較プロテオーム / 生物系統進化 / コア遺伝子群 / 比較プロテオームデータベース / 生物系統 / バイオインフォマティクス / ホヤ / ゲノム解読
Outline of Final Research Achievements

Gene spectra for 314 animals species across ten phyla was investigated and organized based on the levels of taxonomic classifications; phylum, class, order, family, and genus. The number of genes in common across all investigated phyla was 1,908, most of which were covering fundamental core genes necessary to maintain life activities. A total of 1,299 lineage specific genes were also determined, where the majority were mitochondrial genes, suggesting animal specific mechanism requiring those genes. Interestingly, there were genes absent only in vertebrates. Those findings would provide key information to understand the process of evolution.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (7 results)

All 2015 Other

All Presentation (1 results) Remarks (6 results)

  • [Presentation] 生物種間比較プロテオミクスデータベース構築と遺伝子スペクトル比較解析2015

    • Author(s)
      遠藤俊徳
    • Organizer
      日本遺伝学会
    • Place of Presentation
      東北大学(仙台)
    • Year and Date
      2015-09-24
    • Related Report
      2015 Research-status Report
  • [Remarks] Inter-Phyla Genome Profiler プロテオームスペクトル比較データベース

    • URL

      http://phylomix.ibio.jp/web/

    • Related Report
      2017 Annual Research Report
  • [Remarks] Phylomix Genome Master: ゲノム決定済生物名称・学名・系統・遺伝子統計情報DB

    • URL

      http://phylomix.ibio.jp/web/genome_master/tab/2

    • Related Report
      2017 Annual Research Report
  • [Remarks] Phylomix Identical Seqs: 同一アミノ配列を持つタンパク質のデータベース

    • URL

      http://phylomix.ibio.jp/web/spectra/level/identical_seq

    • Related Report
      2017 Annual Research Report
  • [Remarks] ホヤプロテイン統合データベースCIPRO

    • URL

      http://cipro.ibio.jp

    • Related Report
      2015 Research-status Report
  • [Remarks] 生物種間比較プロテオームデータベースPhylomix (暫定版)

    • URL

      http://phylomix.ibio.jp/web/spectra/level/phylum1

    • Related Report
      2015 Research-status Report
  • [Remarks] 生物種間同一遺伝子配列データベースIdentical Seq

    • URL

      http://phylomix.ibio.jp/web/spectra/level/identical_seq

    • Related Report
      2015 Research-status Report

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Published: 2014-04-04   Modified: 2019-12-27  

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