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Genome wide analysis for breeding of tolerant rice cultivars to unfertilized paddy field.

Research Project

Project/Area Number 26450009
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Science in genetics and breeding
Research InstitutionThe University of Shiga Prefecture

Principal Investigator

shimizu akifumi  滋賀県立大学, 環境科学部, 准教授 (40409082)

Co-Investigator(Kenkyū-buntansha) 山崎 将紀  神戸大学, 農学研究科, 准教授 (00432550)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords栄養ストレス耐性 / 遺伝解析 / 栄養ストレス / GWAS / 収量関連形質 / 環境ストレス / 遺伝育種学 / 全ゲノム関連解析
Outline of Final Research Achievements

To breed tolerant cultivars adapted to low-input sustainable agriculture, we conducted genome wide association study (GWAS) using 112 Japanese rice cultivars which have been genotyped using more than three thousands of genome wide DNA markers. Rice cultivars were cultivated at 18~ years-unfertilized paddy filed once a year from 2014 to 2016 and biomass-related and yield-related traits were investigated. Results of GWAS showed consistently significant genome regions at several traits. Since panicle number showed very significant varietal differences, QTL analyses were conducted using recombinant inbred lines (from 2015 to 2016). A major QTL on chromosome 7 having LOD scores >4 and ~20 percent of phenotypic variance was detected at both of 2015 and 2016.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (3 results)

All 2017 2016 2015

All Presentation (3 results)

  • [Presentation] 無肥料水田で栽培したイネ穂数の遺伝解析2017

    • Author(s)
      藤田楓加, 橋本康史, 山崎将紀, 清水顕史
    • Organizer
      日本育種学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2017-03-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] 連続無施肥水田を利用した、イネ収量形質の全ゲノム関連解析2016

    • Author(s)
      清水顕史
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      佐賀大学
    • Related Report
      2016 Annual Research Report
  • [Presentation] 日本イネ集団を用いた、低リン耐性関連形質のゲノムワイド関連解析1. 根分泌物質による不可給態リンの可溶化2015

    • Author(s)
      田端 友樹, 藤田楓加, 山崎将紀, 清水顕史
    • Organizer
      日本育種学会
    • Place of Presentation
      玉川大学
    • Year and Date
      2015-03-21 – 2015-03-22
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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