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Expression dynamics of arsenic-metabolizing genes in a dissimilatory arsenate-reducing bacterium Geobacter sp. OR-1

Research Project

Project/Area Number 26450086
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied microbiology
Research InstitutionChiba University

Principal Investigator

AMACHI SEIGO  千葉大学, 大学院園芸学研究科, 教授 (80323393)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsヒ素 / 汚染 / 溶出 / Geobacter / ヒ酸還元 / arrA / arsC / ヒ素溶出 / 鉄還元 / プロテオーム / 遺伝子発現 / シトクロム / 細胞外電子伝達
Outline of Final Research Achievements

Arsenic (As) is released from anaerobic sediments into groundwater as arsenite, and dissimilatory arsenate-reducing bacteria (DARB) may play important roles in As release. Geobacter sp. OR-1, one of DARB, has a variety of As-metabolizing genes such as dissimilatory arsenate reductase genes (arrAB) and genes for As resistance (arsACDR) in its genome. The aim of this study was to understand expression dynamics of these genes or proteins in strain OR-1. Transcriptional analysis revealed that most of As-metabolizing genes were induced by As, and that the expression of arrA and arsC was 52 and 260 times higher in the presence of As, respectively. Comprehensive proteomic analysis showed that proteins involved in oxidative stress response, protein folding, molecular chaperones, and sulfur metabolism were also expressed cooperatively in the presence of As. Our results shed light on how microbes cope with this toxic metalloid, and play an important role in the transfer of As in nature.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (18 results)

All 2017 2016 2015 2014

All Journal Article (5 results) (of which Peer Reviewed: 4 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (11 results) (of which Invited: 1 results) Book (2 results)

  • [Journal Article] 水稲におけるヒ素とカドミウムをめぐる諸問題2017

    • Author(s)
      小林秀誉、牧野知之、加藤英孝、石川 覚、馬 建峰、橋本洋平、山口紀子、天知誠吾、川崎 晃、馬場浩司、荒尾知人
    • Journal Title

      日本土壌肥料学会誌

      Volume: 88 Pages: 73-78

    • NAID

      130006279233

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Impact of Arsenite on the Bacterial Community Structure and Diversity in Soil2016

    • Author(s)
      D. T. Dong, S. Yamamura and S. Amachi
    • Journal Title

      Microbes and Environments

      Volume: 31 Issue: 1 Pages: 41-48

    • DOI

      10.1264/jsme2.ME15093

    • NAID

      130005138792

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2016 Annual Research Report 2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Draft genome sequence of Geobacter sp. OR-1, an arsenate-respiring bacterium isolated from paddy soil2015

    • Author(s)
      A. Ehara, H. Suzuki and S. Amachi
    • Journal Title

      Genome Announcements

      Volume: 3 Issue: 1

    • DOI

      10.1128/genomea.01478-14

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Draft genome sequence of Anaeromyxobacter sp. PSR-1, an arsenate-respiring bacterium isolated from arsenic-contaminated soil2015

    • Author(s)
      M. Tonomura, A. Ehara, H. Suzuki and S. Amachi
    • Journal Title

      Genome Announcements

      Volume: 3 Issue: 3

    • DOI

      10.1128/genomea.00472-15

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Microbiology of inorganic arsenic : From metabolism to bioremediation2014

    • Author(s)
      S. Yamamura and S. Amachi
    • Journal Title

      J. Biosci. Bioeng

      Volume: (in press) Issue: 1 Pages: 1-9

    • DOI

      10.1016/j.jbiosc.2013.12.011

    • NAID

      110009838761

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] 異化的ヒ酸還元細菌によるヒ素ストレス応答機構の発現解析2016

    • Author(s)
      土屋達哉、笠原康裕、濱村奈津子、天知 誠吾
    • Organizer
      日本微生物生態学会第31回大会
    • Place of Presentation
      横須賀市文化会館(神奈川県横須賀市)
    • Year and Date
      2016-10-23
    • Related Report
      2016 Annual Research Report
  • [Presentation] ヒ酸呼吸細菌Anaeromyxobacter sp. PSR-1株のヒ酸還元酵素について2016

    • Author(s)
      殿村美森、山田樹奈、天知誠吾
    • Organizer
      日本微生物生態学会第31回大会
    • Place of Presentation
      横須賀市文化会館(神奈川県横須賀市)
    • Year and Date
      2016-10-23
    • Related Report
      2016 Annual Research Report
  • [Presentation] 土壌中のヒ素存在形態の変化と微生物の役割2016

    • Author(s)
      天知誠吾
    • Organizer
      日本土壌肥料学会2016年度大会
    • Place of Presentation
      佐賀大学(佐賀県佐賀市)
    • Year and Date
      2016-09-20
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 異化的ヒ酸還元細菌のヒ素ストレス応答の網羅的解析2016

    • Author(s)
      土屋達哉、笠原康裕、天知誠吾
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道、札幌市)
    • Year and Date
      2016-03-28
    • Related Report
      2015 Research-status Report
  • [Presentation] 異化的ヒ酸還元菌を用いた土壌中ヒ素の可溶化条件の検討2015

    • Author(s)
      倉澤響、天知誠吾、山村茂樹
    • Organizer
      第30回日本微生物生態学会大会
    • Place of Presentation
      土浦亀城プラザ(茨城県、土浦市)
    • Year and Date
      2015-10-18
    • Related Report
      2015 Research-status Report
  • [Presentation] ヒ酸呼吸細菌を利用した土壌ヒ素汚染浄化2014

    • Author(s)
      天知誠吾、山村茂樹
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      アクトシティ浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Research-status Report
  • [Presentation] ヒ酸呼吸細菌Geobacter sp. OR-1のプロテオーム解析2014

    • Author(s)
      江原彩香、Timothy Sanchez、Srinivas Iyer、Chris Yeager、濱村奈津子、鈴木治夫、天知誠吾
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      アクトシティ浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Research-status Report
  • [Presentation] ヒ酸還元細菌とメディエーターを用いたヒ素汚染土壌のバイオレメディエーション手法の検討2014

    • Author(s)
      須藤崇行、山村茂樹、天知誠吾
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      アクトシティ浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Research-status Report
  • [Presentation] 異化的ヒ酸還元細菌Anaeromyxobacter sp. PSR-1株のドラフトゲノム解析2014

    • Author(s)
      殿村美森、江原彩香、鈴木治夫、天知誠吾
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      アクトシティ浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Research-status Report
  • [Presentation] 微生物によるヒ素の可溶化-汚染土壌のバイオレメディエーションを目指して-2014

    • Author(s)
      天知誠吾
    • Organizer
      第66回日本生物工学会大会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] 異化的ヒ酸還元細菌と酸化還元メディエーターを併用した汚染土壌浄化技術の開発2014

    • Author(s)
      山村茂樹、天知誠吾、池道彦
    • Organizer
      第66回日本生物工学会大会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Research-status Report
  • [Book] 微生物の細胞外電子伝達と汚染浄化、難培養微生物研究の最新技術III(大熊盛也、野田悟子 編)2015

    • Author(s)
      天知誠吾、山村茂樹
    • Publisher
      シーエムシー出版
    • Related Report
      2015 Research-status Report
  • [Book] 地球を救うメタルバイオテクノロジー2014

    • Author(s)
      山村茂樹、天知誠吾
    • Total Pages
      242
    • Publisher
      成山堂書店
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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