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Multiple analysis of FMN-binding reaction and consideration on molecular evolution based on structural information

Research Project

Project/Area Number 26450131
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied biochemistry
Research InstitutionOsaka City University

Principal Investigator

KITAMURA Masaya  大阪市立大学, 大学院工学研究科, 教授 (20244634)

Co-Investigator(Kenkyū-buntansha) 中西 猛  大阪市立大学, 大学院工学研究科, 講師 (20422074)
Research Collaborator TSUMOTO Kouhei  
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsフラボタンパク質 / タンパク質工学 / 構造機能相関 / 補因子 / 国際情報交換
Outline of Final Research Achievements

Binding reaction analysis with cofactor in FMN-binding protein (FMN-bp) was performed. Binding strength with cofactor was thermodynamically analyzed by the surface plasmon resonance spectroscopy and isotherm titration calorimetry in addition to the fluorescence spectroscopy. The dissociation constant with cofactor was not affected by the phosphate ion concentration. By changing the preparation method of apoprotein, I could obtain a large amount of apoFMN-bp having binding activity, and determined the three-dimensional structure. These results were compared with other flavoproteins and new proposals were suggested on the binding mechanism of apoFMN-bp and FMN.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (13 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (3 results) Journal Article (3 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 3 results,  Acknowledgement Compliant: 2 results) Presentation (5 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] Mahasarakham University/Rajabhat University/Chulalongkorn University(Thailand)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Mahasarakham University/Rajabhat University/Chulalongkorn University(Thailand)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research]

    • Related Report
      2015 Research-status Report
  • [Journal Article] Photoinduced electron transfer from aromatic amino acids to the excited isoalloxazine in single mutated flavin mononucleotide binding proteins: Effect of the dimer formation on the rate and the electrostatic energy inside the proteins2017

    • Author(s)
      Nadtanet Nunthaboot,Kiattisak Lugsanangarm, Arthit Nueangaudom, Somsak Pianwanit ,Sirirat Kokpol, Fumio Tanaka, Seiji Taniguchi, Haik Chosrowjan, Takeshi Nakanishi, Masaya Kitamura
    • Journal Title

      Computational and Theoretical Chemistry

      Volume: 1108 Pages: 1-9

    • DOI

      10.1016/j.comptc.2017.03.005

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Conformational Difference between Two Subunits in Flavin Mononucleotide Binding Protein Dimers from Desulfovibrio vulgaris (MF): Molecular Dynamics Simulation2016

    • Author(s)
      Nadtanet Nunthaboot, Kiattisak Lugsanangarm, Somsak Pianwanit, Sirirat Kokpol, Fumio Tanaka, Takeshi Nakanishi, Masaya Kitamura
    • Journal Title

      Computational Biology and Chemistry

      Volume: 64 Pages: 113-125

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Photoinduced electron transfer from aromatic amino acids to the excited isoalloxazine in flavin mononucleotide binding protein. Is the rate in the inverted region of donor – acceptor distance not real?2016

    • Author(s)
      N. Nunthaboot, K. Lugsanangarm, A. Nueangaudom, S. Pianwanit, S. Kokpol, F. Tanaka, S. Taniguchi, H. Chosrowjan, T. Nakanishi, M. Kitamura
    • Journal Title

      Journal of Photochemistry and Photobiology A: Chemistry

      Volume: 326 Pages: 60-68

    • DOI

      10.1016/j.jphotochem.2016.04.005

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] FMN結合タンパク質の補因子結合反応におけるFMNリン酸基の寄与2016

    • Author(s)
      小田 真大、中西 猛、北村 昌也
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] Clostridium acetobutylicum ATCC 824 由来FMN 結合タンパク質の生産とその性質2016

    • Author(s)
      多良 将吾、張 霜玉、中西 猛、北村 昌也
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] 表面プラズモン共鳴法を用いたFMN 結合反応解析2016

    • Author(s)
      山口 亮、張 霜玉、高木 利佳子、中西 猛、北村 昌也
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] Pseudomonas aeruginosa由来フラボドキシンの変異体の性質と構造2015

    • Author(s)
      岡田 大規、荻野 公美子、中西 猛、北村 昌也
    • Organizer
      BMB2015(第38回日本分子生物学会年会・第88回日本生化学会大会 合同大会)
    • Place of Presentation
      神戸コンベンションセンター(兵庫県神戸市)
    • Year and Date
      2015-12-02
    • Related Report
      2015 Research-status Report
  • [Presentation] FMN-binding property and crystal structure of YviC from Lactococcus lactis2014

    • Author(s)
      Rikako Takagi, Takeshi Nakanishi, Takuma Maeda, Nobunari Satake, Kentaro Watanabe, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu, and Masaya Kitamura
    • Organizer
      IUBMB SYMPOSIUM, 18th International Symposium on Flavins and Flavoproteins
    • Place of Presentation
      Phetchaburi (Thailand)
    • Year and Date
      2014-07-27 – 2014-08-01
    • Related Report
      2014 Research-status Report
  • [Book] カラー生化学第4版2015

    • Author(s)
      石浦章一、板部洋之、高木正道、中谷一泰、水島昇、横溝岳彦(監訳)
    • Total Pages
      1193
    • Publisher
      西村書店
    • Related Report
      2014 Research-status Report
  • [Remarks] 研究内容/生物分子工学分野 北村研究室

    • URL

      http://www.bioa.eng.osaka-cu.ac.jp/bic/research.html

    • Related Report
      2015 Research-status Report 2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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