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Rational design of DyP type peroxidase based on the topology

Research Project

Project/Area Number 26450132
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied biochemistry
Research InstitutionJapan Women's University

Principal Investigator

SUGANO Yasushi  日本女子大学, 理学部, 教授 (90282855)

Co-Investigator(Renkei-kenkyūsha) TSUGE Hideaki  京都産業大学, 総合生命科学部, 教授 (40299342)
Research Collaborator YOSHIDA Toru  京都産業大学, 総合生命科学部, 研究助教 (30724546)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
KeywordsDyP / DyP型ペルオキシダーゼ / 分子進化 / 収束進化 / タンパク質工学 / 立体構造のトポロジー / タンパク質機能 / DyP型ペルオキシダーゼ
Outline of Final Research Achievements

DyP-type peroxidase is a novel peroxidase family, which was defined in 2007. Therefore, we had little known its physiological function and structure. In this study, we tried to solve the relationship between its structure and function. Interestingly, DyP-type peroxidase family has been found to be devided to 3 classes, that is classes P, I and V based on strucutral based homology alignment. Moreover, each class must be evolved independently from different origin. It suggests that some of proteins as well as DyP-type peroxidase family also do convergent evolution as some organisms.

Report

(3 results)
  • 2017 Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (10 results)

All 2016 2015 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Remarks (4 results)

  • [Journal Article] Anabaena sp. DyP-type peroxidase is a tetramer consisting of two asymmetirc dimers2016

    • Author(s)
      T. Yoshida, H.J.O. Ogola, Y. Amano, T. Hisabori, H. Ashida, Y. Sawa, H. Tsuge, Y. Sugano
    • Journal Title

      Proteins

      Volume: 84 Issue: 1 Pages: 31-42

    • DOI

      10.1002/prot.24952

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A structural and functional perspective of DyP-type peroxidase family2015

    • Author(s)
      Toru Yoshida, Yasushi Sugano
    • Journal Title

      Archives of Biochemistry and Biophysics

      Volume: 574 Pages: 49-55

    • DOI

      10.1016/j.abb.2015.01.022

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] Streptomyces avermitilis由来DyP型ペルオキシダーゼの異種発現と特性解析2016

    • Author(s)
      菅原佳奈子、成岡知美、加藤史帆、森田美文、菅野靖史
    • Organizer
      日本農芸化学会
    • Place of Presentation
      札幌コンベンションセンター(北海道札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] 担子菌Bjerkandera adusta Dec 1株が分泌する酵素DyPの生理的機能2016

    • Author(s)
      大出恵津乃、天野芳美、長谷川美穂、佐藤麻衣、菅原佳奈子、菅野靖史
    • Organizer
      日本農芸化学会
    • Place of Presentation
      札幌コンベンションセンター(北海道札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] Unique characteristics and function of DyP-type peroxidase2015

    • Author(s)
      菅野靖史
    • Organizer
      日本生化学会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] An improved classification of DyP-type peroxidase family accelerates the research of the family2015

    • Author(s)
      Y. Sugano, T. Yoshida
    • Organizer
      FEMS 2015
    • Place of Presentation
      マーストリヒト オランダ
    • Year and Date
      2015-06-07
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Remarks] ニュース

    • URL

      http://mcm-www.jwu.ac.jp/~ysugano/diary7.html

    • Related Report
      2015 Research-status Report
  • [Remarks] 研究の紹介

    • URL

      http://mcm-www.jwu.ac.jp/~ysugano/research2.html

    • Related Report
      2015 Research-status Report
  • [Remarks] Research

    • URL

      http://mcm-www.jwu.ac.jp/~ysugano/research%20English.html

    • Related Report
      2015 Research-status Report
  • [Remarks] 日本女子大学理学部物質生物科学科菅野研究室

    • URL

      http://mcm-www.jwu.ac.jp/~ysugano/index.html

    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2019-03-29  

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