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Investigation of the swelling and dissolution mechanism of cellulose with differect crystal structures using molecular dynamics simulation

Research Project

Project/Area Number 26450226
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Wood science
Research InstitutionYokohama National University

Principal Investigator

ueda kazuyoshi  横浜国立大学, 大学院工学研究院, 教授 (40223458)

Co-Investigator(Renkei-kenkyūsha) SAKA Shiro  京都大学, エネルギー科学研究科, 教授 (50205697)
Research Collaborator Brady John  コーネル大学, 食品学科, 教授
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords分子動力学シミュレーション / 量子化学計算 / セルロース結晶 / 分子間相互作用 / セルロース / 溶解 / コンピュータシミュレーション
Outline of Final Research Achievements

Cellulose is a renewable resource that has a potential to be used as an energy source. However, the availability is limited because of the high stability of the cellulose crystal structures. In this study, we performed molecular dynamics simulation with four typical crystal polymorphs of cellulose ( Iβ, II, IIII and IVI ) and obtained the fundamental information for the control of the cellulose swelling and hydrolysis. The order of the stability of the four crystals under high temperature and pressure conditions was different and the dissociation mechanisms of them were analyzed based on the interactions between chains in the crystal.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (32 results)

All 2017 2016 2015 2014

All Journal Article (18 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 17 results,  Acknowledgement Compliant: 6 results,  Open Access: 2 results) Presentation (14 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Journal Article] Achiral molecular recognition of aromatic position isomers by polysaccharide-based CSPs in relation to chiral recognition2017

    • Author(s)
      Tohru Shibata, Satoshi Shinkura, Atsushi. Ohnishi, Kazuyoshi Ueda
    • Journal Title

      Molecules

      Volume: 22 Issue: 1 Pages: 38-38

    • DOI

      10.3390/molecules22010038

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discrimination between naphthacene and triphenylene using cellulose tris(4-methylbenzoate) and cellulose tribenzoate : A computational study2017

    • Author(s)
      Yusuke Murakami, Tohru Shibata, and Kazuyoshi Ueda
    • Journal Title

      Carbohydr. Res.

      Volume: 439 Pages: 35-43

    • DOI

      10.1016/j.carres.2017.01.003

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of cellulose/direct dye complex regenerated from supercritical water2016

    • Author(s)
      Hitomi Miyamoto, Yoshiaki Yuguchi, Dmitry M. Rein, Yachin Cohen, Kazuyoshi, Chihiro Yamane
    • Journal Title

      Cellulose

      Volume: 23 Issue: 3 Pages: 2099-2115

    • DOI

      10.1007/s10570-016-0900-7

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Molecular Dynamics and First-principles Studies of Structural Change in 1,3,5-Triamino-2,4,6-trinitrobenzene (TATB) in Crystalline State under High Pressure: Comparison of Hydrogen Bond Systems of TATB versus 1,3-Diamino-2,4,6-trinitrobenzene (DATB)2016

    • Author(s)
      Yuji Kohno, Kazuki Mori, Reiko Hiyoshi, Osamu Takahashi, Kazuyoshi Ueda
    • Journal Title

      Chem. Phys

      Volume: 472 Pages: 163-172

    • DOI

      10.1016/j.chemphys.2016.04.002

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Formation of Hybrid Ring Structure of Cyanurate/Isocyanurate in the Reaction Between 2,4,6-Tris(4-phenyl-phenoxy)-1,3,5-triazine and Phenyl Glycidyl Ether2016

    • Author(s)
      Ohno, Daisuke; Zenyoji, Kazuya; Kurihara, Youji; Ueda, Kazuyoshi; Habuka, Hitoshi
    • Journal Title

      International Journal of Organic Chemistry

      Volume: 6 Issue: 02 Pages: 117-125

    • DOI

      10.4236/ijoc.2016.62013

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dissolving mechanism of cellulose into an aqueous sodium hydroxide solution suggested by molecular dynamics simulation2015

    • Author(s)
      Hitomi Miyamoto, Udo Schnupf, Kazuyoshi Ueda and Chihiro Yamane
    • Journal Title

      Nordic Pulp and Paper Research Journal

      Volume: 30 Pages: 67-77

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Detailed investigation of dependencies of photovoltaic performances of P3HT:PC61BM based solar cells on anodic work function modified by surface treatment of indium-tin-oxide electrode with benzenesulfonyl chloride derivatives.2015

    • Author(s)
      Byambasuren Delgertsetseg, Namsrai Javkhlantugs, Erdenebileg Enkhtur, Yuya Yokokura, Takayuki Ooba, Kazuyoshi Ueda, Chimed Ganzorig, Masaru Sakomura
    • Journal Title

      Org. Elec.

      Volume: 23 Pages: 164-170

    • DOI

      10.1016/j.orgel.2015.04.007

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structure and the interactions in the crystal structure of cellulose IIII calculated by using ab initio molecular dynamics simulations2015

    • Author(s)
      Kazuyoshi Ueda, Tetsuya Ishikawa, Hitomi Miyamoto and Daichi Hayakawa
    • Journal Title

      TechConnect Briefs

      Volume: 1 Pages: 95-98

    • Related Report
      2015 Research-status Report
    • Acknowledgement Compliant
  • [Journal Article] Structure and orientation of antibiotic peptide alamethicin in phospholipid bilayers as revealed by chemical shift oscillation analysis of solid state nuclear magnetic resonance and molecular dynamics simulationfion2015

    • Author(s)
      Takashi Nagao, Daisuke Mishima, Namsrai Javlhalantugs, Jun Wang, Daisuke Ishioka, Kiyonori Yokota, Kazushi, Norisada, Izuru Kawamua, Kazuyoshi, Ueda, Akira Naito
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1848 Issue: 11 Pages: 2789-2798

    • DOI

      10.1016/j.bbamem.2015.07.019

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Ab initio studies of the structure and the interaction of cellulose IIII crystal2015

    • Author(s)
      Tetsuya Ishikawa, Daichi Hayakawa, Hitomi Miyamoto, Motoyasu Ozawa,
    • Journal Title

      Carbohydr. Res.

      Volume: 417 Pages: 72-77

    • DOI

      10.1016/j.carres.2015.09.006

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Molecular dynamics simulation of dehydration in cellulose/water crystals2015

    • Author(s)
      Hitomi Miyamoto, Chihiro Yamane, Kazuyoshi Ueda
    • Journal Title

      Cellulose

      Volume: 22 Issue: 5 Pages: 2899-2910

    • DOI

      10.1007/s10570-015-0716-x

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Density functional study of benzoic acid derivatives modified SnO2 (110) surface2014

    • Author(s)
      Khishigjargal, Tegshjargal, Kazuyoshi Ueda
    • Journal Title

      MRS Online Proceedings Library

      Volume: 1633 Pages: 69-74

    • DOI

      10.1557/opl.2014.46

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Investigation of the structure and the interaction of cellulose triacetate I crystal using ab-initio calculation2014

    • Author(s)
      Takanori Kobayashi, Daichi Hayakawa, Tegshjargal Khishigjargal, and Kazuyoshi Ueda
    • Journal Title

      Carbohydr. Res.

      Volume: 388 Pages: 61-66

    • DOI

      10.1016/j.carres.2014.02.015

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Hydrothermal decomposition of various crystalline celluloses as treated by semi-flow hot-compressed water2014

    • Author(s)
      Rosnah Abdullah, Kazuyoshi Ueda, Shiro Saka
    • Journal Title

      J. Wood Sci.

      Volume: 60(4) Issue: 4 Pages: 278-286

    • DOI

      10.1007/s10086-014-1401-7

    • NAID

      120005621942

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular Dynamic Simulation on Dissociation Behavior of Various Crystalline Celluloses Treated with Hot-Compressed Water2014

    • Author(s)
      Hitomi Miyamoto, Rosnah Abdullah, Hayato Tokimura, Daichi Hayakawa, Shiro Saka, Kazuyoshi Ueda
    • Journal Title

      Cellulose

      Volume: 21 Issue: 5 Pages: 3203-3215

    • DOI

      10.1007/s10570-014-0343-y

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Interaction of extracellular loop II of kappa-opioid receptor (196-228) with opioid peptide dynorphin in membrane environments as revealed by solid state nuclear magnetic resonance, quartz crystal microbalance and molecular dynamics simulation.2014

    • Author(s)
      A. Kira, N. Javkhlantugs, T. Miyamori, Y. Sasaki, M. Eguchi, I. Kawamura, K. Ueda, A. Naito.
    • Journal Title

      J. Phys. Chem. B

      Volume: 118 Issue: 32 Pages: 9604-9612

    • DOI

      10.1021/jp505412j

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Development of Gromacs Support Program: GISP (2)2014

    • Author(s)
      玉城哲平、樺島智大、森一樹、源聡、上田一義
    • Journal Title

      Journal of Computer Chemistry, Japan

      Volume: 13 Issue: 3 Pages: 159-160

    • DOI

      10.2477/jccj.2014-0018

    • NAID

      130004694013

    • ISSN
      1347-1767, 1347-3824
    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Computational Study to evaluate the birefringence of uniaxially oriented film of cellulose Triacetate2014

    • Author(s)
      Daichi Hayakawa and Kazuyoshi Ueda
    • Journal Title

      Carbohydrate Research

      Volume: 402 Pages: 146-151

    • DOI

      10.1016/j.carres.2014.10.021

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 分子動力学法によるポリアミック酸の溶解シミュレーション2016

    • Author(s)
      加藤喜紀・上田一義、片桐寛
    • Organizer
      CSJ化学フェスタ
    • Place of Presentation
      タワーホール船堀
    • Year and Date
      2016-11-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] Evaluation of the solubility of cellulose in water : Free energy calculation using ER method2016

    • Author(s)
      Kazuyoshi Ueda, Madoka Matsushita, Kouhei Kataoka, Yutaka Matsubara
    • Organizer
      アメリカ化学会
    • Place of Presentation
      Philadelphia
    • Year and Date
      2016-08-21
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ER法を用いた自由エネルギー計算によるセルロースの溶解性の検討2016

    • Author(s)
      松原 寛,片岡 宏平,松下 まど加,上田 一義
    • Organizer
      セルロース学会
    • Place of Presentation
      つくばかぴお
    • Year and Date
      2016-07-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] セルロース誘導体の側鎖が分極率異方性に及ぼす影響の計算化学による評価2016

    • Author(s)
      早川大地、広野修一、上田一義
    • Organizer
      セルロース学会
    • Place of Presentation
      つくばかぴお
    • Year and Date
      2016-07-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] 分子シミュレーションで見るセルロースおよびその誘導体の構造と物性2015

    • Author(s)
      上田一義
    • Organizer
      第83回武蔵野地区高分子懇話会
    • Place of Presentation
      東京女子大学72年記念館
    • Year and Date
      2015-11-13
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] セルロース系分子の構造と物性に関する分子シミュレーション2015

    • Author(s)
      上田一義
    • Organizer
      計算科学研究センター ワークショップ FY2015
    • Place of Presentation
      自然科学研究機構、岡崎コンファレンスセンター
    • Year and Date
      2015-09-07
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Structure and the interactions in the crystal structure of cellulose IIII calculated by using ab initio molecular dynamics simulation2015

    • Author(s)
      Kazuyoshi Ueda, Tetsuya Ishikawa, Hitomi Miyamoto, Daichi Hayakawa
    • Organizer
      2015 Tech Connect
    • Place of Presentation
      Washington D. C., Gaylord National Hotel & Convention Center
    • Year and Date
      2015-07-14
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 一軸延伸セルローストリアセテートフィルムの複屈折の計算化学による評価2015

    • Author(s)
      早川大地、上田一義
    • Organizer
      セルロース学会第22回年次大会
    • Place of Presentation
      北海道大学
    • Year and Date
      2015-07-09
    • Related Report
      2015 Research-status Report
  • [Presentation] 計算化学による一軸延伸セルローストリアセテートフィルムの複屈折の検討2015

    • Author(s)
      早川大地、上田一義
    • Organizer
      第64回高分子学会
    • Place of Presentation
      北海道大学
    • Year and Date
      2015-05-27
    • Related Report
      2015 Research-status Report
  • [Presentation] Analysis of the SLP-76 ligand recognition mechanism of Mona/gadsby molecular dynamics simulation2014

    • Author(s)
      植村宜行、上田一義
    • Organizer
      CBI学会
    • Place of Presentation
      タワーホール船堀
    • Year and Date
      2014-10-28 – 2014-10-30
    • Related Report
      2014 Research-status Report
  • [Presentation] 第一原理計算によるセルロースIIII結晶構造の解析2014

    • Author(s)
      石川哲也 宮本ひとみ 早川大地 上田一義
    • Organizer
      高分子学会
    • Place of Presentation
      長崎大学
    • Year and Date
      2014-09-24 – 2014-09-26
    • Related Report
      2014 Research-status Report
  • [Presentation] セルロースの溶媒和:セロビオースのPMFマップ作成による計算化学的検討2014

    • Author(s)
      片岡宏平、上田一義
    • Organizer
      高分子学会
    • Place of Presentation
      長崎大学
    • Year and Date
      2014-09-24 – 2014-09-26
    • Related Report
      2014 Research-status Report
  • [Presentation] セルロースIおよびII型結晶中の水素結合様式の網羅的検討2014

    • Author(s)
      早川大地、上田一義、CERMAV 西山義春、Karim Mazeau
    • Organizer
      セルロース学会
    • Place of Presentation
      鹿児島大学
    • Year and Date
      2014-07-17 – 2014-07-18
    • Related Report
      2014 Research-status Report
  • [Presentation] 直接染料がセルロース結晶化抑制に与える影響2014

    • Author(s)
      宮本ひとみ、湯口宣明、平瀬龍三、上田一義、山根千弘
    • Organizer
      セルロース学会
    • Place of Presentation
      鹿児島大学
    • Year and Date
      2014-07-17 – 2014-07-18
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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