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Physicochemical analysis of metallo-beta-lactamase with improved catalytic efficiency for cephem antibiotics

Research Project

Project/Area Number 26460037
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical pharmacy
Research InstitutionKumamoto University

Principal Investigator

Yamaguchi Yoshihiro  熊本大学, 環境安全センター, 准教授 (10363524)

Co-Investigator(Renkei-kenkyūsha) WACHINO Jun-ichi  名古屋大学, 大学院医学系研究科, 講師 (00535651)
Research Collaborator KIRIKAE Teruo  
FUJITA Mikako  
SHIMIZU Nobutaka  
YAMAGATA Yuriko  
KUROSAKI Hiromasa  
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywords加水分解酵素 / 薬剤耐性菌 / メタロ-β-ラクタマーゼ / Zn(II)イオン / 結晶構造 / 溶液構造 / 速度論的解析 / メタロ-β-ラクタマーゼ / 高触媒活性 / β-ラクタム剤 / 加水分解機構 / 亜鉛酵素 / 基質認識 / 触媒機構 / Zn酵素 / X線小角散乱
Outline of Final Research Achievements

The enzyme KHM-1 is a metallo-β-lactamase (MBL) that hydrolyzes almost all β-lactam antibiotics; compared with other MBLs, KHM-1 has a higher catalytic efficiency for hydrolyzing cephem antibiotics. The objective of this study was to elucidate the mechanism underlying the high catalytic efficiency of KHM-1. Analysis of the crystal structure of KHM-1 showed that one of the two Zn(II) ions in the active site easily dissociates. Small-angle X-ray scattering analysis revealed that the particle size of KHM-1 in solution is small than that of other MBLs (e.g., IMP-1, with a structure similar to that of KHM-1). Kinetic analysis of KHM-1 revealed that His170 of KHM-1, which is located near the active site, plays an important role in the enzyme’s hydrolytic activity

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (6 results)

All 2016 2015 2014 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (2 results) Remarks (3 results)

  • [Journal Article] Crystal Structure of IMP-2 Metallo-β-lactamase from <i>Acinetobacter</i> spp.2015

    • Author(s)
      Yamaguchi Y., Matsueda S., Matsunaga K., Takashio N., Toma-Fukai S., Yamagata Y., Shibata N., Wachino J., Shibayama K., Arakawa Y. & Kurosaki H.
    • Journal Title

      Biological and Pharmaceutical Bulletin

      Volume: 38 Issue: 1 Pages: 96-101

    • DOI

      10.1248/bpb.b14-00594

    • NAID

      130004872220

    • ISSN
      0918-6158, 1347-5215
    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] 基質特異性向上の解明を目指したメタロ-β-ラクタマーゼKHM-1の結晶構造解析と速度論的解析2016

    • Author(s)
      伊東理生、安田健二、西並 隆、古賀涼子、藤田美歌子、切替照雄、山縣ゆり子、黒崎博雅、山口佳宏
    • Organizer
      第33回日本薬学会九州支部大会
    • Place of Presentation
      鹿児島大学(郡元キャンパス)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 金属酵素メタロ-β-ラクタマーゼに結合した未知化合物の分離法の探索2014

    • Author(s)
      山口佳宏、甲斐紀子、稲津 誠、荒川宜親、黒崎博雅
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Research-status Report
  • [Remarks] 酵素機能化学 山口研究室

    • URL

      http://yamaguchi-labo.jp/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 酵素機能化学 山口研究室

    • URL

      http://yamaguchi-labo.jp

    • Related Report
      2015 Research-status Report
  • [Remarks] 酵素機能化学 山口研究室

    • URL

      http://www.yamaguchi-labo.jp/

    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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