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Identification and characterization of susceptible genes to type 1 diabetes using in the clustered family

Research Project

Project/Area Number 26461348
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Metabolomics
Research InstitutionKindai University

Principal Investigator

KAWABATA Yumiko  近畿大学, 医学部, 准教授 (80423185)

Co-Investigator(Kenkyū-buntansha) 池上 博司  近畿大学, 医学部, 教授 (20221062)
能宗 伸輔  近畿大学, 医学部, 講師 (90460849)
馬場谷 成  近畿大学, 医学部, 講師 (10449837)
廣峰 義久  近畿大学, 医学部, 講師 (30460851)
Research Collaborator MAEGAWA Hiroshi  滋賀医科大学, 医学部, 教授 (00209363)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywords1型糖尿病 / 遺伝因子 / 1型糖尿病 / 遺伝子
Outline of Final Research Achievements

More than 50 genetic loci have been associated with type 1 diabetes in multiple studies among Caucasian populations, but they have been able to explain only 70-80% of the heritability for type 1 diabetes. Rare variants with high permeability are likely to explain a part of the remaining missing heritability.
In Japan, where the prevalence of type 1 diabetes is very low, it is extremely rare for type 1 diabetes to develop in three or more siblings within a family. We found a family, in which type 1 diabetes occurred in three siblings among four sisters and the fourth sister was positive for GAD antibody but had not developed diabetes. To search the rare causative genetic variants, we performed whole-exome sequencing, using parents and four sisters. We narrowed down all exome variants to 11 candidate variants. Moreover, we performed whole-genome linkage analysis. By combining whole-exome sequencing and linkage analysis, we extracted one locus as candidate regions to type 1 diabetes.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (20 results)

All 2017 2016 2015 2014 2013

All Journal Article (10 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 10 results,  Open Access: 8 results,  Acknowledgement Compliant: 2 results) Presentation (10 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Journal Article] A rare HLA genotype in two siblings with type 1 diabetes in a Japanese family clustered with type 1 diabetes2017

    • Author(s)
      Ina Y, Kawabata Y, Sakamoto R, Sekiguchi N and Ikegami H
    • Journal Title

      J Diabetes Investig

      Volume: 印刷中 Issue: 6 Pages: 762-765

    • DOI

      10.1111/jdi.12628

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Risk factors of sudden death and cardiac arrest at the onset of fulminant type 1 diabetes mellitus.2016

    • Author(s)
      Yamaguchi aden MY, Imagawa A, Iwahashi H, Shimomura I, Awata T, Ikegami H, Uchigata Y, Osawa H, Kajio H, Kawasaki E, Kawabata Y, Shimada A, Takahashi K, Tanaka S, Yasuda K, Yasuda H, Kobayashi T, Hanafusa T
    • Journal Title

      Diabetology Int

      Volume: なし Issue: 3 Pages: 281-288

    • DOI

      10.1007/s13340-015-0247-6

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Immune checkpoint therapy and type 1 diabetes2016

    • Author(s)
      Ikegami H, Kawabata Y, Noso S
    • Journal Title

      Diabetol Int

      Volume: 7 Issue: 3 Pages: 221-227

    • DOI

      10.1007/s13340-016-0276-9

    • NAID

      40020934033

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clinical and Genetic Characteristics of Non-Insulin-Requiring Glutamic Acid Decarboxylase (GAD) Autoantibody-Positive Diabetes: A Nationwide Survey in Japan2016

    • Author(s)
      Yasui J, Kawasaki E, Tanaka S, Awata T, Ikegami H, Imagawa A, Uchigata Y, Osawa H, Kajio H, Kawabata Y, Shimada A, Takahashi K, Yasuda K, Yasuda H, Hanafusa T, Kobayashi T, Japan Diabetes Society Committee on Type 1 Diabetes Mellitus Research
    • Journal Title

      PLoS ONE

      Volume: 11 Issue: 5 Pages: 1-12

    • DOI

      10.1371/journal.pone.0155643

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Organ specificity in autoimmune diseases: thyroid and islet autoimmunity in alopecia areata.2015

    • Author(s)
      Noso S, Park C, Babaya N, Hiromine Y, Harada T, Ito H, Taketomo Y, Oiso N, Kawada A, Suzuki T, Kawabata Y, Ikegami H
    • Journal Title

      J Clin Endocrinol Metab

      Volume: 100 Issue: 5 Pages: 1976-1983

    • DOI

      10.1210/jc.2014-3985

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Low PD-1 expression in peripheral CD4+ T-cells in Japanese patients with autoimmune type 1 diabetes.2015

    • Author(s)
      Fujisawa R, Haseda F, Tsutsumi C, Hiromine Y, Noso S, Kawabata Y, Mitsui S, Terasaki J, Ikegami H, Imagawa A, Hanafusa T.
    • Journal Title

      Clin Exp Immunol

      Volume: Feb 12 Issue: 3 Pages: 452-457

    • DOI

      10.1111/cei.12603

    • Related Report
      2015 Research-status Report 2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Organ-specificity in autoimmune diseases: thyroid and islet autoimmunity in alopecia areata.2015

    • Author(s)
      Noso S, Park C, Babaya N, Hiromine Y, Harada T, Ito H, Taketomo Y, Kanto K, Oiso N, Kawada A, Suzuki T, Kawabata Y, Ikegami H
    • Journal Title

      J Clin Endocrinol Metab

      Volume: Mar3

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Genetic dissection of susceptibility genes for diabetes and related phenotypes on mouse chromosome 14 by means of congenic strains.2014

    • Author(s)
      Babaya N, Ueda H, Noso S, Hiromine Y, Itoi-Babaya M, Kobayashi M, Fujisawa T, Ikegami H
    • Journal Title

      BMC Genet

      Volume: 15 Issue: 1 Pages: 1-10

    • DOI

      10.1186/s12863-014-0093-8

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Diagnostic criteria for acute-onset type 1 diabetes mellitus (2012): Report of the Committee of Japan Diabetes Society on the Research of Fulminant and Acute-onset Type 1 Diabetes Mellitus.2014

    • Author(s)
      Kawasaki E, Maruyama T, Imagawa A, Awata T, Ikegami H, Uchigata Y, Osawa H, Kawabata Y, Kobayashi T, Shimada A, Shimizu I, Takahashi K, Nagata M, Makino H, Hanafusa T
    • Journal Title

      J Diabetes Investig

      Volume: 5 Issue: 1 Pages: 115-118

    • DOI

      10.1111/jdi.12119

    • NAID

      120006986708

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel effect of ezetimibe to inhibit the development of non-alcoholic fatty liver disease in Fatty Liver Shionogi mouse2013

    • Author(s)
      Wang X
    • Journal Title

      Hepatol Res

      Volume: 印刷中 Issue: 1 Pages: 102-13

    • DOI

      10.1111/hepr.12092

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Identification of Genetic Variants co-segregated with Islet Autoimmunity in Multiplex Families of Type 1 Diabetes by Genome-wide Exome Analysis2017

    • Author(s)
      Noso S, Hosomichi K, Babaya N, Hiromine Y,Ito H, Taketomo Y, Kawabata Y, Ikegami H
    • Organizer
      Immunology of Diabetes Society, 15th International Congress
    • Place of Presentation
      San Francisco
    • Year and Date
      2017-01-19
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 1型糖尿病が濃厚集積した1家系:HLAとの関連の検討2016

    • Author(s)
      伊奈雄二郎、平田由紀、田中和子、市野功、関口直孝、真弓武仁、川畑由美子、池上博司、井口登與志
    • Organizer
      第59回日本糖尿病学会年次学術集会
    • Place of Presentation
      国立京都国際会館(京都)
    • Year and Date
      2016-05-19
    • Related Report
      2016 Annual Research Report
  • [Presentation] 1型糖尿病の遺伝因子:濃厚集積家系の解析2016

    • Author(s)
      池上博司、能宗伸輔、川畑由美子
    • Organizer
      第59回日本糖尿病学会年次学術集会
    • Place of Presentation
      国立京都国際会館(京都)
    • Year and Date
      2016-05-19
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 全エクソーム解析を用いた1型糖尿病濃厚発症家系における原因遺伝子変異の探索2016

    • Author(s)
      川畑由美子、能宗伸輔、馬場谷成、廣峰義久、細道一善、前川聡、池上博司
    • Organizer
      第89回日本内分泌学会学術総会
    • Place of Presentation
      京都市(国立京都国際会館)
    • Year and Date
      2016-04-22
    • Related Report
      2015 Research-status Report
  • [Presentation] 全エクソーム解析を用いた1型糖尿病濃厚発症家系における原因遺伝子変異の探索2016

    • Author(s)
      川畑由美子、能宗伸輔、馬場谷成、廣峰義久、細道一善、前川聡、池上博司
    • Organizer
      第89回日本内分泌学会学術総会
    • Place of Presentation
      国立京都国際会館(京都)
    • Year and Date
      2016-04-21
    • Related Report
      2016 Annual Research Report
  • [Presentation] 1型糖尿病の遺伝:common variantからrare variantまで2015

    • Author(s)
      川畑由美子、能宗伸輔、池上博司
    • Organizer
      第58回日本糖尿病学会年次学術集会
    • Place of Presentation
      下関市(ぱしふぃっくびぃなす)
    • Year and Date
      2015-05-23
    • Related Report
      2015 Research-status Report
  • [Presentation] 1型糖尿病の遺伝:common variantからrare variantまで2015

    • Author(s)
      川畑由美子、能宗伸輔、池上博司
    • Organizer
      第58回日本糖尿病学会年次学術集会
    • Place of Presentation
      下関市(ぱしふぃっくびいなす)
    • Year and Date
      2015-05-23
    • Related Report
      2014 Research-status Report
  • [Presentation] Identification of genetic loci linked to type 1 diabetes susceptibility by linkage analysis with whole exome sequencing in clustered family2015

    • Author(s)
      Noso S, Kawabata Y, Babaya N, Hiromine Y, Hosomichi K, Ikegami H
    • Organizer
      Immunology of Diabetes Society, 14th International Congress
    • Place of Presentation
      Munich, Germany(Hilton Munich Park)
    • Year and Date
      2015-04-13
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 1型糖尿病の成因:遺伝子からのアプローチ2015

    • Author(s)
      池上博司
    • Organizer
      第49回糖尿病学の進歩
    • Place of Presentation
      岡山市(岡山全日空ホテル)
    • Year and Date
      2015-02-20
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] NODマウスにおける膵島特異的リンパ球浸潤と1型糖尿病発症に及ぼすMafa遺伝子の役割2015

    • Author(s)
      能宗伸輔、馬場谷成、廣峰義久、川畑由美子、池上博司
    • Organizer
      第29回日本糖尿病・肥満動物学会年次学術集会
    • Place of Presentation
      京都市(京都大学医学部芝蘭会館)
    • Year and Date
      2015-02-14
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2020-01-20  

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