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Genetic evaluation of patients with intellectual disability using chromosomal microarray and next-generation sequencing

Research Project

Project/Area Number 26461522
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Pediatrics
Research InstitutionShinshu University

Principal Investigator

TAKANO Kyoko  信州大学, 学術研究院医学系, 助教 (70392420)

Co-Investigator(Kenkyū-buntansha) 古庄 知己  信州大学, 学術研究院医学系(医学部附属病院), 准教授 (90276311)
稲葉 雄二  信州大学, 学術研究院医学系, 准教授 (30334890)
涌井 敬子  信州大学, 学術研究院医学系, 講師 (50324249)
福嶋 義光  信州大学, 学術研究院医学系, 教授 (70273084)
Co-Investigator(Renkei-kenkyūsha) MATSUMOTO Naomichi  横浜市立大学, 医学研究科, 教授 (80325638)
KANAME Tadashi  国立研究開発法人国立成育医療研究センター, ゲノム医療研究部, 部長 (40264288)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords知的障害 / 次世代シークエンサー / マイクロアレイ染色体検査 / 疾患パネル解析 / エクソーム解析 / 遺伝カウンセリング / 臨床エクソーム解析 / 知的障害原因 / パネル解析
Outline of Final Research Achievements

Intellectual disability (ID) is commonly defined by an intelligence quotient below 70 and starts before the age of 18. ID is one of the most frequent developmental disorders in children, and its prevalence is 1-3% in the general population. However, more than half of ID was of unknown etiology due to its clinical and genetic heterogeneities. The “ID clinic” was established at the Center for Medical Genetics, Shinshu University Hospital in April 2014. We provide clinical diagnosis, genetic evaluation, and genetic counseling to patients with ID. Genetic evaluation includes chromosomal microarray analysis, targeted NGS using the panel of ID-related genes, and exome sequencing. To date, 109 patients have visited the “ID clinic” and genetic causes were identified in 27 patients (24.8%). Genetic evaluation in the “ID clinic” is thought to be useful in providing definitive diagnosis, expected clinical course, and recurrence risk to patients and their family.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (18 results)

All 2017 2016 2015 2014

All Journal Article (4 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 4 results,  Acknowledgement Compliant: 3 results,  Open Access: 2 results) Presentation (14 results) (of which Int'l Joint Research: 3 results)

  • [Journal Article] High prevalence of genetic alterations in early-onset epileptic encephalopathies associated with infantile movement disorders.2016

    • Author(s)
      Kobayashi Y, Tohyama J, Kato M, Akasaka N, Magara S, Kawashima H, Ohashi T, Shiraishi H, Nakashima M, Saitsu H, Matsumoto N.
    • Journal Title

      Brain Dev.

      Volume: 38 Issue: 7 Pages: 285-92

    • DOI

      10.1038/jhg.2016.27

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Elevation of neuron specific enolase and brain iron deposition on susceptibility-weighted imaging as diagnostic clues for beta-propeller protein-associated neurodegeneration in early childhood: Additional case report and review of the literature.2016

    • Author(s)
      Takano K, Shiba N, Wakui K, Yamaguchi T, Aida N, Inaba Y, Fukushima Y, Kosho T.
    • Journal Title

      Am J Med Genet A.

      Volume: 170 Issue: 2 Pages: 322-328

    • DOI

      10.1002/ajmg.a.37432

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Japanese familial case of myoclonus-dystonia syndrome with a splicing mutation in SGCE.2015

    • Author(s)
      Wada T, Takano K, Tsurusaki Y, Miyake N, Nakashima M, Saitsu H, Matsumoto N, Osaka H.
    • Journal Title

      Pediatr Int.

      Volume: 57 Issue: 2 Pages: 324-326

    • DOI

      10.1111/ped.12613

    • NAID

      120005666180

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Japanese girl with an early-infantile onset vanishing white matter disease resembling Cree leukoencephalopathy.2014

    • Author(s)
      Takano K, Tsuyusaki Y, Sato M, Takagi M, Anzai R, Okuda M, Iai M, Yamashita S,
    • Journal Title

      Brain Dev.

      Volume: 37(6) Issue: 6 Pages: 638-42

    • DOI

      10.1016/j.braindev.2014.10.002

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 信州大学医学部附属病院遺伝子医療研究センター知的障害(ID)外来の取り組み2017

    • Author(s)
      高野亨子、本林光雄、稲葉雄二、福山哲広、平林伸一、西恵理子、笛木昇、山口智美、涌井敬子、柳久美子、要匡、秦健一郎、古庄知己、福嶋義光
    • Organizer
      第59回日本小児神経学会学術集会
    • Place of Presentation
      大阪国際会議場(大阪市)
    • Year and Date
      2017-06-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] 肝脾腫を呈したCoffin-Siris症候群の1男児例2016

    • Author(s)
      高野亨子、本林光雄、山口智美、涌井敬子、稲葉雄二、古庄知己、福嶋義光
    • Organizer
      第39回日本小児遺伝学会学術集会
    • Place of Presentation
      慶應義塾大学(東京都)
    • Year and Date
      2016-12-09
    • Related Report
      2016 Annual Research Report
  • [Presentation] Hepatosplenomegaly as the initial manifestation of Coffin-Siris syndrome caused by an ARID1B mutation.2016

    • Author(s)
      Kyoko Takano, Mitsuo Motobayashi, Tomomi Yamaguchi, Keiko Wakui, Yuji Inaba, Yoshimitsu Fukushima, Tomoki Kosho
    • Organizer
      第66回米国人類遺伝学会
    • Place of Presentation
      バンクーバーコンベンションセンター(カナダ)
    • Year and Date
      2016-10-18
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] SHANK3遺伝子変異を認めた1女児例2016

    • Author(s)
      高野亨子、古庄知己、涌井敬子、福嶋義光
    • Organizer
      第58回日本小児神経学会学術集会
    • Place of Presentation
      京王プラザホテル新宿(東京都)
    • Year and Date
      2016-06-03
    • Related Report
      2016 Annual Research Report
  • [Presentation] 信州大学医学部附属病院遺伝子診療部知的障害(ID)外来の取り組み~第2報~2016

    • Author(s)
      高野亨子、神谷素子、稲葉雄二、福山哲広、平林伸一、笛木昇、西恵理子、古庄知己、福嶋義光
    • Organizer
      第119回日本小児科学会学術集会
    • Place of Presentation
      ロイトン札幌(札幌市)
    • Year and Date
      2016-05-13
    • Related Report
      2015 Research-status Report
  • [Presentation] Genetic evaluation of patients with intellectual disability (ID) using chromosomal microarray and targeted next-generation sequencing at the “ID clinic”2016

    • Author(s)
      Kyoko Takano, Tomoki Kosho, Keiko Wakui, Motoko Kamiya, Mitsuo Motobayashi, Naoko Shiba, Tetsuhiro Fukuyama, Noboru Fueki, Shinichi Hirabayashi, Eriko Nishi, Masumi Ishikawa, Emiko Kise, Tomomi Yamaguchi, Rie Kawamura, Yuji Inaba, Yoshimitsu Fukushima
    • Organizer
      ICHG 2016
    • Place of Presentation
      京都国際会館(京都市)
    • Year and Date
      2016-04-04
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 知的障害(Intellectual Disability: ID)外来~2年間の成果~2016

    • Author(s)
      髙野亨子、古庄知己、福嶋義光
    • Organizer
      第8回日本小児科学会長野地方会
    • Place of Presentation
      上田市文化会館ホール/中央公民館(上田市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 信州大学医学部附属病院遺伝子診療部知的障害(ID)外来受診患者の遺伝学的背景・臨床症状の検討2015

    • Author(s)
      高野亨子、古庄知己、涌井敬子、神谷素子、石川真澄、黄瀬恵美子、山口智美、河村理恵、西恵理子、柴直子、本林光雄、稲葉雄二、福山哲広、平林伸一、笛木昇、福嶋義光
    • Organizer
      日本人類遺伝学会第60回大会
    • Place of Presentation
      京王プラザホテル(東京都)
    • Year and Date
      2015-10-14
    • Related Report
      2015 Research-status Report
  • [Presentation] Two patients diagnosed with BPAN in infancy.2015

    • Author(s)
      Kyoko Takano, Naoko Shiba, Kazuya Goto, Tomomi Yamaguchi, Keiko Wakui, Tomoki Kosho, Yuji Inaba, Yoshimitsu Fukushima
    • Organizer
      ASHG 2015
    • Place of Presentation
      Baltimore(米国)
    • Year and Date
      2015-10-06
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 信州大学医学部附属病院遺伝子診療部知的障害(ID)外来開設1年間の成果 -遺伝学的背景・臨床症状の検討-2015

    • Author(s)
      高野亨子、柴直子、本林光雄、稲葉雄二、福山哲広、平林伸一、笛木昇、西恵理子、石川真澄、黄瀬恵美子、山口智美、河村理恵、涌井敬子、古庄知己、福嶋義光
    • Organizer
      第38回日本小児遺伝学会学術集会
    • Place of Presentation
      パシフィコ横浜会議センター(横浜市)
    • Year and Date
      2015-07-25
    • Related Report
      2015 Research-status Report
  • [Presentation] β-propeller protein-associated neurodegeneration (BPAN)の1女児例2015

    • Author(s)
      高野亨子、柴直子、本林光雄、稲葉 雄二、福嶋 義光
    • Organizer
      第57回日本小児神経学会学術集会
    • Place of Presentation
      帝国ホテル大阪(大阪市)
    • Year and Date
      2015-05-28
    • Related Report
      2015 Research-status Report
  • [Presentation] 信州大学医学部附属病院遺伝子診療部知的障害(ID)外来開設の試み2015

    • Author(s)
      高野亨子、本林光雄、稲葉雄二、福山哲広、平林伸一、笛木昇、西恵理子、古庄知己、福嶋義光
    • Organizer
      日本小児科学会学術集会
    • Place of Presentation
      大阪国際会議場(大阪府)
    • Year and Date
      2015-04-17 – 2015-04-19
    • Related Report
      2014 Research-status Report
  • [Presentation] CDKL5遺伝子重複を認めた低身長と小頭症を伴う発達遅滞の男児例2014

    • Author(s)
      高野 亨子、西村 貴文、涌井 敬子、山口 智美、高橋 悟、稲葉 雄二、古庄 知己、福嶋 義光
    • Organizer
      日本人類遺伝学会59回大会
    • Place of Presentation
      タワーホール船堀(東京都)
    • Year and Date
      2014-11-20 – 2014-11-22
    • Related Report
      2014 Research-status Report
  • [Presentation] A duplication of the CDKL5 gene identified in a boy with developmental delay with autistic behavior, short stature and microcephaly2014

    • Author(s)
      Kyoko Takano, Takafumi Nishimura, Keiko Wakui, Satoru Takahashi, Yuji Inaba, Tomoki Kosho, Yoshimitsu Fukushima
    • Organizer
      米国人類遺伝学会
    • Place of Presentation
      San Diego Convention Center(米国)
    • Year and Date
      2014-10-18 – 2014-10-22
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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