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Genome wide association study by visual field defect pattern in primary open angle glaucoma

Research Project

Project/Area Number 26462666
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Ophthalmology
Research InstitutionKyoto Prefectural University of Medicine

Principal Investigator

Ikeda Yoko  京都府立医科大学, 医学(系)研究科(研究院), 客員講師 (00433243)

Co-Investigator(Kenkyū-buntansha) 田代 啓  京都府立医科大学, 医学(系)研究科(研究院), 教授 (10263097)
木下 茂  京都府立医科大学, 医学(系)研究科(研究院), 教授 (30116024)
森 和彦  京都府立医科大学, 医学(系)研究科(研究院), 講師 (40252001)
上野 盛夫  京都府立医科大学, 医学(系)研究科(研究院), 助教 (40426531)
中野 正和  京都府立医科大学, 医学(系)研究科(研究院), 准教授 (70381944)
Research Collaborator YOSHIKAWA Haruna  京都府立医科大学, 医学研究科, 研修員 (80516013)
YOSHII Kengo  京都府立医科大学, 医学研究科, 講師 (90388471)
SATO Ryuichi  京都府立医科大学, 医学研究科, 助教 (30717533)
OMI Natsue  京都府立医科大学, 医学研究科, 助教 (10438210)
SATO Fumiko  京都府立医科大学, 医学研究科, 研修員
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords緑内障 / 視野障害 / 全ゲノム解析 / 遺伝子
Outline of Final Research Achievements

We divided the visual field (VF) pattern (i.e., superior, inferior, and central) of 1,100 primary open-angle glaucoma (POAG) subjects, including normal-tension glaucoma (NTG) subjects, in which we had 1000K gene chip variant data. We performed a genome-wide association study (GWAS) of the VF pattern of 635 subjects (331 superior and 304 inferior cases), excluding subjects with an undetectable and central pattern as follows: 1) if the subject had a different VF in both eyes, it was analyzed as inferior (n=635), and 2) if the VF pattern was the same in both eyes (n=515). We could not detect a significant variant associated with VF pattern. In order to detect the correct variants that are associated with the VF pattern, we must collect subjects prospectively with their VF at the early stage, and keep the collect DNA from more than 1000 POAG patients.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (17 results)

All 2016 2015 2014

All Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 5 results,  Open Access: 3 results) Presentation (9 results) (of which Int'l Joint Research: 4 results) Book (1 results)

  • [Journal Article] 原発開放隅角緑内障の全身的危険因子の検討.2016

    • Author(s)
      三戸千賀子、池田陽子、森和彦、山田裕美、津崎さつき、長谷川志乃、上野盛 夫、中野正和、吉井健悟、木下茂.
    • Journal Title

      あたらしい眼科

      Volume: 32(11) Pages: 1609-1613

    • NAID

      40020657625

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stronger association of CDKN2B-AS1 variants in female normal-tension glaucoma patients in a Japanese population.2016

    • Author(s)
      Mori K, Nakano M, Tokuda Y, Ikeda Y, Ueno M, Sotozono C, Kinoshita S, Tashiro K.
    • Journal Title

      Invest. Ophthalmol. Vis. Sci.

      Volume: 57 Issue: 14 Pages: 6416-6417

    • DOI

      10.1167/iovs.16-20417

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 緑内障セミナー:落屑症候群/落屑緑内障に関連する新規遺伝子2015

    • Author(s)
      中野正和、池田陽子
    • Journal Title

      あたらしい眼科

      Volume: 32 Pages: 1147-1148

    • Related Report
      2015 Research-status Report
  • [Journal Article] Trinucleotide Repeat Expansion in TCF4 Gene of Fuchs’ Endothelial Corneal Dystrophy in Japanese.2015

    • Author(s)
      Nakano, M., Okumura, N., Nakagawa, H., Koizumi, N., Ikeda, Y., Ueno, M., Yoshii, K., Adachi, H., Aleff, R., Butz, M., Highsmith, E. W., Tashiro, K., Baratz, K. H., Kinoshita, S., Wieben, E. D.
    • Journal Title

      Invest. Ophthalmol. Vis. Sci.

      Volume: 56 Issue: 8 Pages: 4865-4869

    • DOI

      10.1167/iovs.15-17082

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A common variant mapping to CACNA1A is associated with susceptibility to exfoliation syndrome.2015

    • Author(s)
      Aung T
    • Journal Title

      Nature Genetics

      Volume: 47 Issue: 4 Pages: 387-392

    • DOI

      10.1038/ng.3226

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel common variants and susceptible haplotype for exfoliation glaucoma specific to Asian population2014

    • Author(s)
      Nakano M, Ikeda Y, Tokuda Y, Fuwa M, Ueno M, Imai K, Sato R, Omi N, Adachi H, Kageyama M, Mori K, Kinoshita S,Tashiro K
    • Journal Title

      Sci Rep

      Volume: 4 Issue: 1 Pages: 5340-5340

    • DOI

      10.1038/srep05340

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 落屑緑内障におけるアジア人固有の新規バリアント/ハプロタイプの同定2014

    • Author(s)
      中野正和、池田陽子、徳田雄市、不破正博、森 和彦、上野盛夫、今井浩二郎、佐藤隆一、大見奈津江、足立博子、景山正明、森和彦、田代 啓、木下 茂
    • Journal Title

      日本眼科学会雑誌

      Volume: 118 Pages: 867-867

    • Related Report
      2014 Research-status Report
  • [Presentation] Evaluation of the Safety and Efficacy of ROCK inhibitor Ripasudil Hydrochloride Hydrate for the Reduction of Intraocular Pressure2016

    • Author(s)
      Ikeda Y, Mori K,Yoshikawa H, Yoshii K,Ueno M, K, Imai K, Maruyama Y, Kinoshita S, Sotozono C.
    • Organizer
      American Academy of Ophthalmology
    • Place of Presentation
      Chicago
    • Year and Date
      2016-10-15
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Clinical phenotype association analysis for the risk allele of CDKN2B-AS1 variant in primary open-angle glaucoma patients and normal control subjects.2016

    • Author(s)
      Y.Ikeda,K.Mori,M.Ueno,Y.Yamamoto,Y.Maruyama,K.Yoshii,K.Imai,R.Sato,F.Sato, M.Nakano,H.Yoshikawa,C.Sotozono,K.Tashiro,S.Kinoshita.
    • Organizer
      12th European Glaucoma Society Congress
    • Place of Presentation
      Prague
    • Year and Date
      2016-07-12
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 国際コンソーシアム共同研究で得られた広義原発開放隅角緑内障に関連するバリアント2015

    • Author(s)
      池田陽子
    • Organizer
      第69回日本臨床眼科学会
    • Place of Presentation
      名古屋
    • Year and Date
      2015-10-22
    • Related Report
      2015 Research-status Report
  • [Presentation] NOVEL VARIANTS ASSOCIATED WITH EXFOLIATION SYNDROME/EXFOLIATION GLAUCOMA IN JAPANESE2015

    • Author(s)
      Yoko Ikeda, Masakazu Nakano, Kazuhiko Mori, Morio Ueno, Kojiro Imai, Yuichi Tokuda, Hiroko Adachi,Ryuichi Sato, Natsue Omi, Kei Tashiro, Shigeru Kinoshita.
    • Organizer
      6th World Glaucoma Congress
    • Place of Presentation
      Hong Kong
    • Year and Date
      2015-06-09
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] New susceptible genetic variants of exfoliation syndrome/exfoliation glaucoma in a Japanese population.2015

    • Author(s)
      Yoko Ikeda, Masakazu Nakano, Kazuhiko Mori, Morio Ueno, Kojiro Imai, Natue Omi, Yuichi Tokuda, Hiroko Adachi, Kei Tashiro, Shigeru Kinoshita.
    • Organizer
      The Association Research in Vision and Ophthalmology
    • Place of Presentation
      Denver
    • Year and Date
      2015-05-05
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Genome-wide association study of exfoliation syndrome/exfoliation glaucoma in a Japanese population.2014

    • Author(s)
      Nakano M, Ikeda Y, Tokuda Y, Adachi H, Ueno M, Imai K, Sato R, Omi N, Mori K, Kinoshita S, Tashiro K
    • Organizer
      64th Annual Meeting of the American Society of Human Genetics
    • Place of Presentation
      San Diego
    • Year and Date
      2014-10-18 – 2014-10-22
    • Related Report
      2014 Research-status Report
  • [Presentation] CDKN2B-AS1ジェノタイプと原発開放隅角緑内障の量的形質との関連解析.2014

    • Author(s)
      上野盛夫、池田陽子、森和彦、中野正和、大見奈津江、佐藤隆一、佐藤史子、吉井健悟、田代啓
    • Organizer
      第25回日本緑内障学会
    • Place of Presentation
      大阪
    • Year and Date
      2014-09-19 – 2014-09-21
    • Related Report
      2014 Research-status Report
  • [Presentation] Association Analysis between CDKN2B-AS1 Genotype and Quantitative Traits of Primary Open-Angle Glaucoma.2014

    • Author(s)
      Ikeda Y, Mori K, Ueno M, NakanoM, Tokuda Y, Omi N, Sato R,Yoshii K,Tashiro K, Kinoshita S
    • Organizer
      11thEuropean Glaucoma Congress
    • Place of Presentation
      Nice
    • Year and Date
      2014-06-07 – 2014-06-11
    • Related Report
      2014 Research-status Report
  • [Presentation] Association Analysis between CDKN2B-AS1 Genotype and Quantitative Traits of Primary Open-Angle Glaucoma.2014

    • Author(s)
      Ikeda Y, Mori K, Ueno M, NakanoM, Tokuda Y, Omi N, Sato R,Yoshii K,Tashiro K, Kinoshita S. ARVO, . 2014.5.6
    • Organizer
      The Association for Research in Vision and Ophthalmology
    • Place of Presentation
      Orland
    • Year and Date
      2014-05-04 – 2014-05-08
    • Related Report
      2014 Research-status Report
  • [Book] 緑内障診療クローズアップ. 緑内障診療の基本. 緑内障に関連する遺伝子.2014

    • Author(s)
      池田陽子、中野正和
    • Total Pages
      6
    • Publisher
      メジカルビュー
    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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