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Study on DNA adductomics related to DNA damage and repair involving environmental microorganisms

Research Project

Project/Area Number 26505010
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field オミクス計測科学
Research InstitutionYokohama City University

Principal Investigator

Kanaly Robert  横浜市立大学, 生命ナノシステム科学研究科(八景キャンパス), 教授 (00448656)

Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsDNAアダクトミクス / 多環芳香族炭化水素 / Biotransformation / DNA adductomics
Outline of Final Research Achievements

Bacteria that biodegrade genotoxicants such as polycyclic aromatic hydrocarbons (PAHs) play important roles in carbon cycling of environmental pollutants. During PAH biodegradation, metabolite production may cause DNA damage and mutations which have implications for bacterial evolution. Biodegradation and exposure experiments were conducted with Sphingobium barthaii KK22. PAH-catechol metabolites were produced during biotransformation and gene expression related to PAH-catechol production was confirmed by RT-PCR. DNA adducts, including a PAH-catechol adduct were identified through DNA damage assessment by LC/ESI-MS/MS DNA adductomics and provided first direct evidence that bacteria are subjected to bulky DNA damage during PAH exposure. Increased levels of reactive oxygen species and oxidative DNA adducts were confirmed. RNA transcriptome analyses revealed that more than 600 genes were differentially expressed from PAH-catechol exposure including genes involved in DNA damage repair.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (21 results)

All 2018 2017 2016 2015

All Journal Article (8 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 8 results,  Open Access: 5 results,  Acknowledgement Compliant: 7 results) Presentation (11 results) (of which Int'l Joint Research: 7 results) Book (2 results)

  • [Journal Article] Internalization of a novel, huge lectin from Ibacus novemdentatus (slipper lobster) induces apoptosis of mammalian cancer cells.2017

    • Author(s)
      Fujii Y, Fujiwara T, Koide Y, Hasan I, Sugawara S, Rajia S, Kawsar SM, Yamamoto D, Araki D, Kanaly RA, Ogawa Y, Fujita H, Ozeki Y.
    • Journal Title

      Glycoconj J

      Volume: 34 Issue: 1 Pages: 85-94

    • DOI

      10.1007/s10719-016-9731-x

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] RAMA casein zymography: time-saving and highly sensitive casein zymography for MMP7 and trypsin2016

    • Author(s)
      Yasumitsu, H., Y. Ozeki, and R. A. Kanaly
    • Journal Title

      Electrophoresis

      Volume: 37 Issue: 22 Pages: 2959-2962

    • DOI

      10.1002/elps.201600346

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Analysis of the fine-tuning of cyanobacterial circadian phase by monochromatic light and long day conditions.2016

    • Author(s)
      Kobayashi T, Obana Y, Kuboi N, Kitayama Y, Hayashi S, Oka M, Wada N, Arita K, Shimizu T, Sato M, Kanaly RA, Kutsuna S.
    • Journal Title

      Plant Cell Physiol.

      Volume: 57 Issue: 1 Pages: 105-114

    • DOI

      10.1093/pcp/pcv177

    • Related Report
      2016 Research-status Report 2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Application of DNA adductomics to soil bacterium Sphingobium sp. strain KK222015

    • Author(s)
      Kanaly, R. A., R. Micheletto, T. Matsuda, Y. Utsuno, Y. Ozeki and N. Hamamura
    • Journal Title

      MicrobiologyOpen

      Volume: 4 Issue: 5 Pages: 841-856

    • DOI

      10.1002/mbo3.283

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Sphingobium barthaii sp. nov., a high molecular weight polycyclic aromatic hydrocarbon-degrading bacterium isolated from cattle pasture soil2015

    • Author(s)
      Maeda, A.H., M. Kunihiro, Y. Ozeki, Y. Nogi and R.A. Kanaly
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 65 Issue: Pt_9 Pages: 2919-2924

    • DOI

      10.1099/ijs.0.000356

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Aerobic biotransformation of 3-methylindole to ring cleavage products by2015

    • Author(s)
      Fukuoka K, Ozeki Y, Kanaly RA
    • Journal Title

      Biodegradation

      Volume: 26 Issue: 5 Pages: 359-373

    • DOI

      10.1007/s10532-015-9739-0

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] MytiLec, a mussel R-type lectin, interacts with surface glycan Gb3 on Burkitt’s lymphoma cells to trigger apoptosis through multiple pathways2015

    • Author(s)
      Imtiaj Hasan, Shigeki Sugawara, Yuki Fujii, Yasuhiro Koide, Daiki Terada, Naoya Iimura, Toshiyuki Fujiwara, Keisuke G. Takahashi, Nobuhiko Kojima, Sultana Rajia, Sarkar M. A. Kawsar, Robert A. Kanaly, Hideho Uchiyama, Masahiro Hosono, Yukiko Ogawa, Hideaki Fujita, Jiharu Hamako, Taei Matsui, Yasuhiro Ozeki
    • Journal Title

      Marine Drugs

      Volume: 13 Issue: 12 Pages: 7377-7389

    • DOI

      10.3390/md13127071

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Expression of various types of glycans in the lugworm (Perinereis nuntia var. vallata)2015

    • Author(s)
      Koide Y, Hasan I, Asanuma A, Fujii Y, Ogawa Y, Kobayashi H, Rajia S, Kawsar SMA, Kanaly RA, Ozeki Y.
    • Journal Title

      Annals of Marine Biology and Research

      Volume: 2 Pages: 1005-1005

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] Investigation of intracellular RNA damage to improve chemical safety assessment methods2018

    • Author(s)
      Takeshita, T., and R.A. Kanaly
    • Organizer
      The Seventh Intercollegiate Conference on Science in Japan, Japan Ministry of Education, Culture, Sports, Science and Technology Mar 2018
    • Related Report
      2017 Annual Research Report
  • [Presentation] Comprehensive analysis of DNA adducts in human liver cells after exposure to safrole2017

    • Author(s)
      Takeshita, T., F. Tao, N. Kojima and R.A. Kanaly
    • Organizer
      The 23st General Meeting of the Japanese Society of Food Chemistry
    • Related Report
      2017 Annual Research Report
  • [Presentation] Investigation of reactive metabolites in human liver cell line by use of the DNA adductome method2017

    • Author(s)
      Takeshita, T., F. Tao, N. Kojima and R.A. Kanaly
    • Organizer
      Consortium of Biological Sciences 2017 (ConBio2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] Biodegradation of high concentrations of model fuel hydrocarbon NAPLs by a bacterium isolated from soil2016

    • Author(s)
      Takeshita, T., and R. A. Kanaly
    • Organizer
      The 31st Annual Meeting of the Japanese Society of Microbial Ecology
    • Place of Presentation
      Yokosuka, Kanagawa, Japan
    • Year and Date
      2016-10-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Bacterial biodegradation of sulfur-containing aromatic pollutants and the production of disulfides measured by LC-ESI-MS22016

    • Author(s)
      Ozawa, K., Nemoto, Y., Kikuchi, M., and R. A. Kanaly
    • Organizer
      The 31st Annual Meeting of the Japanese Society of Microbial Ecology
    • Place of Presentation
      Yokosuka, Kanagawa, Japan
    • Year and Date
      2016-10-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Biodegradation of benzo[a]pyrene by Sphingobium barthaii KK22 and effects on co-occurring PAH biodegradation2016

    • Author(s)
      Izawa, M., and R.A. Kanaly
    • Organizer
      The 31st Annual Meeting of the Japanese Society of Microbial Ecology
    • Place of Presentation
      Yokosuka, Kanagawa, Japan
    • Year and Date
      2016-10-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Chemical and genetic analyses of polycyclic aromatic hydrocarbon biodegradation by Sphingobium barthaii KK222016

    • Author(s)
      Maeda, A.H., S. Nishi, Y. Hatada, Y. Ohta, Y. Ozeki, M. Kunihiro and R.A. Kanaly
    • Organizer
      The 31st Annual Meeting of the Japanese Society of Microbial Ecology
    • Place of Presentation
      Yokosuka, Kanagawa, Japan
    • Year and Date
      2016-10-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Biotransformation of PAHs by Sphingobium barthaii and investigation of DNA damage by LC/ESI-MS/MS2016

    • Author(s)
      Fukuoka, K., and R.A. Kanaly
    • Organizer
      ASM Microbe 2016
    • Place of Presentation
      Boston, MA, USA
    • Year and Date
      2016-06-16
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Investigation of DNA adducts in PAH-degrading bacterial cells after exposure to hydrogen peroxide by DNA adductomics2015

    • Author(s)
      Fukuoka, K., and R.A. Kanaly
    • Organizer
      The 44th Annual Meeting of the Japanese Environmental Mutagen Society
    • Place of Presentation
      Fukuoka, Japan
    • Year and Date
      2015-11-27
    • Related Report
      2015 Research-status Report
  • [Presentation] MytiLec, an R-type lectin from Mediterranean mussel regulates cancer cell growth through glycan-dependent signaling.2015

    • Author(s)
      Hasan I, Fujii Y, Ogawa Y, Sugawara S, Hosono M, Koide Y, Rajia S, Kawsar S M A, Kanaly R A, Fujiwara T, Fujita H, Ozeki Y
    • Organizer
      23rd International Glycoconjugates Symposium (GLYCO23)
    • Place of Presentation
      Split, Croatia
    • Year and Date
      2015-09-15
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Analysis of DNA damage in bacterial cells by DNA adductomics2015

    • Author(s)
      Kanaly, R A., K. Fukuoka, and R. Micheletto
    • Organizer
      International Congress of the Asian Society of Toxicology (ASIATOX 2015)
    • Place of Presentation
      Jeju, South Korea
    • Year and Date
      2015-06-23
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Book] Chapter 33, "Structural glycobiology for lectin to promote advanced biomedical research" Marine Glycobiology, Principles and Applications. (Edited by Se-Kwon Kim, ISBN: 9781498709613)2016

    • Author(s)
      1. Hasan I, Fujii Y, Rajia S, Kawsar S M A, Sugawara S, Ogawa Y, Hosono M, Koide Y, Kanaly R A, Ozeki Y.
    • Publisher
      Taylor & Francis Group, CRC press
    • Related Report
      2015 Research-status Report
  • [Book] Chapter 21: SUEL/RBL-Lectins and their biomedical applications" Marine Omics, Principles and Applications (Se-Kwon Kim ed, ISBN 9781482258202)2016

    • Author(s)
      5. Koide Y, Hasan I, Fujii Y, Kawsar SMA, Rajia S, Sugawara S, Ogawa Y, Hosono M, Kanaly RA, Ozeki Y.
    • Publisher
      Taylor & Francis Group, CRC press
    • Related Report
      2015 Research-status Report

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Published: 2014-04-04   Modified: 2023-01-30  

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