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Rational investigation of fungal ribosomal peptide biosynthetic pathways

Research Project

Project/Area Number 26505015
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field オミクス計測科学
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

Umemura Maiko  国立研究開発法人産業技術総合研究所, 生物プロセス研究部門, 研究グループ付 (00552259)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywords糸状菌 / 二次代謝経路 / リボソームペプチド
Outline of Final Research Achievements

Recently, we reported the first ribosomal peptide synthetic pathway in filamentous fungi, which is the ustiloxin one in Aspergillus flavus. Here, we further surveyed 14 Aspergillus strains for the ustiloxin type ribosomal peptide synthetic (ust-RiPS) pathways and compounds, using genome sequence analyses and LC-MS metabolite analyses. Two novel cyclic peptides synthesised by novel ust-RiPS pathways were identified, which are both composed of the amino acids in the core peptide sequences and cyclised by the ether bonds directly to aromatic rings, in the same manner with ustiloxin. However, the amino acid components and the structures are completely different among the three compounds. The genome information survey indicates that the ust-RiPS pathways are widely conserved in fungi, and there is a wide variety of the core peptide sequences. The results in this study strongly imply that the ust-RiPS pathways are a diverse and abundant resource of biosynthetic genes for cyclic peptides.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (10 results)

All 2016 2015 2014

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Journal Article] Unveiling the Biosynthetic Pathway of the Ribosomally Synthesized and Post-translationally Modified Peptide Ustiloxin B in Filamentous Fungi.2016

    • Author(s)
      Y. Ye, A. Minami, Y. Igarashi, M. Izumikawa, M. Umemura, N. Nagano, M. Machida, T. Kawahara, K. Shin-ya, K. Gomi, H. Oikawa
    • Journal Title

      Angewandte Chemie-International Edition

      Volume: 55 Issue: 28 Pages: 8072-8075

    • DOI

      10.1002/anie.201602611

    • NAID

      120006318732

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genome sequence of Ustilaginoidea virens IPU010, a rice pathogenic fungus causing false smut2016

    • Author(s)
      T. Kumagai, T. Ishii, G. Terai, M. Umemura (CA), M. Machida, and K. Asai
    • Journal Title

      Genome Announcements

      Volume: 4 Issue: 3

    • DOI

      10.1128/genomea.00306-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Class of cyclic ribosomal peptide synthetic genes in filamentous fungi2016

    • Author(s)
      N. Nagano, M. Umemura (CA), M. Izumikawa, J. Kawano, T. Ishii, M. Kikuchi, K. Tomii, T. Kumagai, A. Yoshimi, M. Machida, K. Abe, K. Shin-ya, and K. Asai
    • Journal Title

      Fungal Genetics and Biology

      Volume: 86 Pages: 58-70

    • DOI

      10.1016/j.fgb.2015.12.010

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens2015

    • Author(s)
      T. Tsukui, N. Nagano, M. Umemura (co-CA), T. Kumagai, G. Terai, M. Machida, and K. Asai
    • Journal Title

      Bioinformatics

      Volume: 31 Issue: 7 Pages: 981-985

    • DOI

      10.1093/bioinformatics/btu753

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Engineering Aspergillus sesquiterpene synthases in Escherichia coli2016

    • Author(s)
      M. Umemura, A. Jervis, N. Rattray, K. Tomii, R. Breitling, E. Takano
    • Organizer
      Synthetic Biology UK 2016
    • Place of Presentation
      Dynamic Earth, Edinburgh, UK
    • Year and Date
      2016-11-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ribosomal peptide biosynthetic pathways widely conserved in filamentous fungi2016

    • Author(s)
      M. Umemura, N. Nagano, A. Yoshimi, Y. Ye, A. Minami, K. Abe, K. Shin-ya, H. Oikawa, M. Machida
    • Organizer
      2016 SIMB Annual Meeting and Exhibition
    • Place of Presentation
      Sheraton Hotel, New Orleans, US
    • Year and Date
      2016-07-24
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Discovery of fungal secondary metabolic pathways from large-scale genomic and transcriptomic information2015

    • Author(s)
      Myco Umemura, Nozomi Nagano, Hideaki Koike, Koichi Tamano, Keietsu Abe, Kazuo Shin-ya, Kiyoshi Asai, and Masayuki Machida
    • Organizer
      28th Fungal Genetics Conference
    • Place of Presentation
      Asilomar, USA
    • Year and Date
      2015-03-18
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] カビの新規リボソームペプチド生合成経路に対応した化合物MSピークの検出2014

    • Author(s)
      梅村舞子、長野希美
    • Organizer
      第41回BMSコ ンファレンス
    • Place of Presentation
      石川県能登町
    • Year and Date
      2014-07-08
    • Related Report
      2014 Research-status Report
  • [Patent(Industrial Property Rights)] 真菌由来の新規リボソームペプチド2015

    • Inventor(s)
      梅村舞子、長野希美、新家一男、泉川 美穂
    • Industrial Property Rights Holder
      梅村舞子、長野希美、新家一男、泉川 美穂
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-215256
    • Filing Date
      2015-10-30
    • Related Report
      2015 Research-status Report
  • [Patent(Industrial Property Rights)] 真菌由来のリボソームペプチドを製造する方法2015

    • Inventor(s)
      長野希美、梅村舞子、小池英明、熊谷俊高、町田雅之
    • Industrial Property Rights Holder
      長野希美、梅村舞子、小池英明、熊谷俊高、町田雅之
    • Industrial Property Rights Type
      特許
    • Filing Date
      2015-03-06
    • Related Report
      2014 Research-status Report
    • Overseas

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Published: 2014-04-04   Modified: 2018-03-22  

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