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Mechanisms regulating transcriptional activation and repression by gravitropic response in root and cotyledon

Research Project

Project/Area Number 26506016
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field 宇宙生命学
Research InstitutionYokohama City University

Principal Investigator

Kakei Yusuke  横浜市立大学, 木原生物学研究所, 特任助教 (50636727)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2015: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2014: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Keywords重力屈性 / オーキシン / シロイヌナズナ / ブラシノステロイド / トランスクリプトーム / 重力
Outline of Final Research Achievements

Plant gravitropism is regulated by polar transport of auxin to the same direction as gravity. The subsequent molecular mechanism of the differential growth still remains to be elucidated. An auxin biomarker protein containing modified TIR1, DII region of Aux/IAA and FRET regions was developed to compare auxin concentration in shoot and root gravitropism. However, overexpression of the biomarker did not work well because of cell death. Next, we analyzed transcriptional changes caused by wide range of auxin concentrations. Inhibitors of auxin biosynthesis BBo and PPBo that target auxin synthase YUCCA were developed to decrease auxin concentration effectively. Arabidopsis and Mung bean were treated by gravity stimuli, several kinds of auxin and inhibitors. Interestingly, transcriptional auxin-responses after gravity stimuli were observed at non-bending tissue in addition to bending tissues. This result showed that auxin concentration is not the only regulator of differential growth.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (15 results)

All 2017 2016 2015 2014 Other

All Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results,  Acknowledgement Compliant: 1 results,  Open Access: 1 results) Presentation (10 results) (of which Int'l Joint Research: 3 results) Remarks (2 results)

  • [Journal Article] Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.2017

    • Author(s)
      Kakei Y, Nakamura A, Yamamoto M, Ishida Y, Yamazaki C, Sato A, Narukawa-Nara M, Soeno K, Shimada Y.
    • Journal Title

      Plant Cell Physiol.

      Volume: 印刷中 Pages: 598-606

    • DOI

      10.1093/pcp/pcx007

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Small-molecule auxin inhibitors that target YUCCA are powerful tools for studying auxin function.2015

    • Author(s)
      Kakei Y, Yamazaki C, Suzuki M, Nakamura A, Sato A, Ishida Y, Kikuchi R, Higashi S, Kokudo Y, Ishii T, Soeno K, Shimada Y
    • Journal Title

      Plant J

      Volume: 84 Issue: 4 Pages: 827-37

    • DOI

      10.1111/tpj.13032

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] AtCAST3.0 Update: A Web-Based Tool for Analysis of Transcriptome Data by Searching Similarities in Gene Expression Profiles.2015

    • Author(s)
      Kakei, Y. & Shimada, Y
    • Journal Title

      Plant Cell Physiol

      Volume: 56 Issue: 1 Pages: e7-e7

    • DOI

      10.1093/pcp/pcu174

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 過重力処理下シロイヌナズナ花茎の抗重力反応におけるオーキシン・ブラシノステロイドの機能解析2017

    • Author(s)
      石山和、筧雄介、山崎千秋、鈴木優志、木村あかり、曽我康一、保尊隆享、嶋田幸久
    • Organizer
      第58回日本植物生理学会年会
    • Place of Presentation
      鹿児島県鹿児島市鹿児島大学
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] オーキシン合成酵素OsTAR1の阻害剤Pyruvamineを用いたイネオーキシン生合成経路の解析2016

    • Author(s)
      筧 雄介、中村郁子、山本光洋、石田遥介、山崎千秋、佐藤明子、成川(奈良)恵、添野和雄、嶋田幸久
    • Organizer
      植物化学調節学会第51回大会
    • Place of Presentation
      高知県南国市高知大学物部キャンパス
    • Year and Date
      2016-10-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] Transcriptional changes in response to auxin inhibitors2016

    • Author(s)
      Yusuke Kakei, Yosuke Ishida, Yukihisa Shimada
    • Organizer
      2016 IPGSA Meeting
    • Place of Presentation
      Toronto, Canada
    • Year and Date
      2016-06-21
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] AtCAST3.1: Update of web-based tool to analyze transcriptome data with a new feature to search experimental conditions by a group of genes and their expressions.2016

    • Author(s)
      Yusuke Kakei and Yukihisa Shimada
    • Organizer
      第57回日本植物生理学会年会
    • Place of Presentation
      盛岡
    • Year and Date
      2016-03-18
    • Related Report
      2015 Research-status Report
  • [Presentation] Phenylboronic acid analogs are effective auxin biosynthesis inhibitors targeting YUCCA2016

    • Author(s)
      Yusuke Kakei, Chiaki Yamazaki, Masashi Suzuki, Ayako Nakamura, Akiko Sato, Yosuke Ishida, Rie Kikuchi, Shouichi Higashi, Yumiko Yamasaki-Kokudo, Takahiro Ishii, Kazuo Soeno, Yukihisa Shimada
    • Organizer
      第57回日本植物生理学会年会
    • Place of Presentation
      盛岡
    • Year and Date
      2016-03-18
    • Related Report
      2015 Research-status Report
  • [Presentation] Auxin biosynthesis inhibitor effectively targets YUCCA2015

    • Author(s)
      Yusuke Kakei, Chiaki Yamazaki, Masashi Suzuki, Ayako Nakamura, Akiko Sato, Yosuke Ishida, Rie Kikuchi, Shouichi Higashi, Yumiko Yamasaki-Kokudo, Takahiro Ishii, Kazuo Soeno, Yukihisa Shimada
    • Organizer
      Pacificjem 2015
    • Place of Presentation
      Honolulu
    • Year and Date
      2015-12-15
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Novel chemical tools for auxin biology ~auxin-biosynthesis inhibitors2015

    • Author(s)
      Yukihisa Shimada, Yusuke Kakei, Ayako Nakamura, Rie Kikuchi, Kazuo Soeno
    • Organizer
      Pacificjem 2015
    • Place of Presentation
      Honolulu
    • Year and Date
      2015-12-15
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] ブラシノステロイドによる細胞壁強度の制御はシロイヌナズナ花茎の伸長・重力応答領域を調節する2015

    • Author(s)
      筧 雄介, 山崎 千秋, 鈴木 優志, 曽我康一, 保尊隆享, 嶋田 幸久
    • Organizer
      植物化学調節学会第50回大会
    • Place of Presentation
      東京
    • Year and Date
      2015-10-23
    • Related Report
      2015 Research-status Report
  • [Presentation] ブラシノステロイドによるシロイヌナズナ花茎の伸長・重力応答領域の決定分子機構の探索2015

    • Author(s)
      筧 雄介, 山崎 千秋, 鈴木 優志, 嶋田 幸久
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Research-status Report
  • [Presentation] 抗重力形態形成に着目したシロイヌナズナ花茎先端-基部軸の遺伝子発現二次元分布の網羅的解析2014

    • Author(s)
      筧 雄介, 木村あかり, 山崎 千秋, 鈴木 優志, 嶋田 幸久
    • Organizer
      日本宇宙生物科学会第28回大会
    • Place of Presentation
      大阪
    • Year and Date
      2014-09-22 – 2014-09-23
    • Related Report
      2014 Research-status Report
  • [Remarks] AtGenExpress JPN

    • URL

      http://atpbsmd.yokohama-cu.ac.jp/

    • Related Report
      2015 Research-status Report
  • [Remarks] AtGenExpressJPN

    • URL

      http://atpbsmd.yokohama-cu.ac.jp/

    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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