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A formal method for iterative numerical algorithms using declarative descriptions

Research Project

Project/Area Number 26540028
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Software
Research InstitutionKyushu University (2015-2016)
Kyoto University (2014)

Principal Investigator

Shimayoshi Takao  九州大学, 情報基盤研究開発センター, 准教授 (60373510)

Co-Investigator(Kenkyū-buntansha) 天野 晃  立命館大学, 生命科学部, 教授 (60252491)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywords形式手法 / 数値計算 / アルゴリズム / 形式言語 / ドメイン特化言語 / 自動プログラミング / ソースコード生成 / 数値解法 / 記述言語
Outline of Final Research Achievements

A framework to generate program source codes using formal languages for numerical algorithms which solve problems with iterative processing were introduced. In these formal language, an algorithm is not defined as a procedure but as a set of mathematical recurrence formulas, and declaratively described as mathematical equations independently of any programing languages. By analyzing relationships among mathematical equations in the description and mathematical variables referred in the equations, an abstract calculation procedure of the described algorithm can be obtained as a partial order relation. From the abstract procedure, program codes in concrete programming languages can be generated.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (20 results)

All 2017 2016 2015 2014

All Journal Article (7 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 7 results,  Acknowledgement Compliant: 1 results,  Open Access: 6 results) Presentation (12 results) (of which Int'l Joint Research: 6 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Influence of Meshing on Multiscale Simulation of Left Ventricular Wall Motion2016

    • Author(s)
      嶋吉 隆夫,小川 貴史,松田 哲也
    • Journal Title

      電子情報通信学会論文誌D 情報・システム

      Volume: J99-D Issue: 5 Pages: 571-578

    • DOI

      10.14923/transinfj.2015JDP7077

    • ISSN
      1880-4535, 1881-0225
    • Year and Date
      2016-05-01
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Modeling analysis of inositol 1,4,5-trisphosphate receptor-mediated Ca2+ mobilization under the control of glucagon-like peptide-1 in mouse pancreatic β-cells2016

    • Author(s)
      Takeda Y, Shimayoshi T, Holz GG, Noma A
    • Journal Title

      American journal of physiology. Cell physiology

      Volume: 310 Issue: 5 Pages: C337-C347

    • DOI

      10.1152/ajpcell.00234.2015

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Application of the Kalman Filter for Faster Strong Coupling of Cardiovascular Simulations2015

    • Author(s)
      Yuki Hasegawa, Takao Shimayoshi, Akira Amano, Tetsuya Matsuda
    • Journal Title

      IEEE Journal of Biomedical and Health Informatics

      Volume: 99 Issue: 4 Pages: 0-0

    • DOI

      10.1109/jbhi.2015.2436212

    • Related Report
      2016 Annual Research Report 2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quantitative Decomposition of Dynamics of Mathematical Cell Models: Method and Application to Ventricular Myocyte Models2015

    • Author(s)
      Takao Shimayoshi, Chae Young Cha, Akira Amano
    • Journal Title

      PLoS ONE

      Volume: 10(6) Issue: 6 Pages: e0124970-e0124970

    • DOI

      10.1371/journal.pone.0124970

    • NAID

      120005997770

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Simulation System for Multiscale Biological Function Models that Require Complex Calculation Scheme2015

    • Author(s)
      天野 晃,プンザラン フローレンシオ ラスティ,嶋吉 隆夫,國枝 義敏
    • Journal Title

      Transactions of Japanese Society for Medical and Biological Engineering

      Volume: 53 Issue: 3 Pages: 115-122

    • DOI

      10.11239/jsmbe.53.115

    • NAID

      130005106895

    • ISSN
      1347-443X, 1881-4379
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quantitative Decomposition of Dynamics of Mathematical Cell Models: Method and Application to Ventricular Myocyte Models2015

    • Author(s)
      Takao Shimayoshi, Chae Young Cha, Akira Amano
    • Journal Title

      PLOS oNE

      Volume: 印刷中

    • NAID

      120005997770

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Study on the Relationship between Electrical Transmural Heterogeneity and Ventricular Energetics2014

    • Author(s)
      長谷川雄基,三島充晴,嶋吉隆夫,天野晃,松田哲也
    • Journal Title

      Transactions of Japanese Society for Medical and Biological Engineering

      Volume: 52 Issue: 3 Pages: 129-135

    • DOI

      10.11239/jsmbe.52.129

    • NAID

      130004691213

    • ISSN
      1347-443X, 1881-4379
    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] A Computational Model of Myocardial Microcirculation including Interstitial Flow2017

    • Author(s)
      Takao Shimayoshi, Yuta Yamamoto, Tetsuya Matsuda
    • Organizer
      39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society
    • Place of Presentation
      Jeju Island, Korea
    • Year and Date
      2017-07-11
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 心筋細胞の数理モデルによる活動機序の解析2016

    • Author(s)
      嶋吉隆夫
    • Organizer
      心血管膜輸送研究会
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2016-10-24
    • Related Report
      2016 Annual Research Report
  • [Presentation] 細胞内カルシウム濃度がミトコンドリアエネルギー代謝に与える影響のシミュレーション解析2016

    • Author(s)
      西村 優汰, 嶋吉 隆夫, 竹内 綾子, 松田 哲也, 松岡 達
    • Organizer
      生体医工学シンポジウム2016
    • Place of Presentation
      北海道旭川市
    • Year and Date
      2016-09-18
    • Related Report
      2016 Annual Research Report
  • [Presentation] 心筋組織微小循環モデルへの間質液流れの導入2016

    • Author(s)
      山本 裕太, 嶋吉 隆夫, 松田 哲也
    • Organizer
      生体医工学シンポジウム2016
    • Place of Presentation
      北海道旭川市
    • Year and Date
      2016-09-18
    • Related Report
      2016 Annual Research Report
  • [Presentation] A Comparison of Recent Human Ventricular Myocyte Models using Mathematical Decomposition of Dynamics2016

    • Author(s)
      Takao Shimayoshi
    • Organizer
      Cardiac Physiome Workshop 2016
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2016-08-24
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Simulation of Cellular Responses to Myocardial Anoxia and Acidosis2016

    • Author(s)
      Yuta Nishimura, Takao Shimayoshi, Ayako Takeuchi, Tetsuya Matsuda, Satoshi Matsuoka
    • Organizer
      38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society
    • Place of Presentation
      Orland, FL, USA
    • Year and Date
      2016-08-19
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Simulation of Myocardial Microcirculation Considering Interstitial Fluid Flow2016

    • Author(s)
      Yuta Yamamoto, Takao Shimayoshi, Tetsuya Matsuda
    • Organizer
      38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society
    • Place of Presentation
      Orland, FL, USA
    • Year and Date
      2016-08-19
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 非線形方程式求根アルゴリズムの宣言的形式言語の設計2016

    • Author(s)
      嶋吉 隆夫,天野 晃
    • Organizer
      情報処理学会プログラミング研究会
    • Place of Presentation
      福岡市
    • Year and Date
      2016-01-13
    • Related Report
      2015 Research-status Report
  • [Presentation] Influence of Meshing on Simulation of Left Ventricular Wall Motion2015

    • Author(s)
      Takao Shimayoshi, Ogawa Takafumi, Tetsuya Matsuda
    • Organizer
      37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society
    • Place of Presentation
      イタリア ミラノ
    • Year and Date
      2015-08-29
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Influence of cellular level transmural heterogeneity on left ventricular energetic efficiency: A theoretical study2015

    • Author(s)
      Takao Shimayoshi, Yuki Hasegawa, and Tetsuya Matsuda
    • Organizer
      Cardiac Physiome Workshop
    • Place of Presentation
      ニュージーランド オークランド
    • Year and Date
      2015-04-08
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Nonlinear Multiscale Circulation Model Reproducable Linear End-Systolic Pressure-Volume Relationship2014

    • Author(s)
      Takao Shimayoshi, Mitsuharu Mishima, Akira Amano, Tetsuya Matsuda
    • Organizer
      36th Annual International Conference of IEEE Engineering in Medicine and Biology Society
    • Place of Presentation
      Chicago, USA
    • Year and Date
      2014-08-30
    • Related Report
      2014 Research-status Report
  • [Presentation] メッシュ分割が左心室拍動連成シミュレーションに与える影響の調査2014

    • Author(s)
      小川貴史, 嶋吉隆夫, 木田直樹, 安達泰治, 松田哲也
    • Organizer
      第53回日本生体医工学会大会
    • Place of Presentation
      仙台国際センター,宮城県仙台市
    • Year and Date
      2014-06-25
    • Related Report
      2014 Research-status Report
  • [Patent(Industrial Property Rights)] 計算コード生成装置、方法及びプログラム2015

    • Inventor(s)
      嶋吉 隆夫,天野 晃
    • Industrial Property Rights Holder
      京都大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-247693
    • Filing Date
      2015-12-18
    • Related Report
      2015 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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